mRNA_H-paniculata_contig6594.14468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.080e-16 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLF 237
GVC CER K +K+ E E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L LK +
Sbjct: 17 GVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRY 95
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 79.7 bits (195), Expect = 2.840e-16 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
GVC+ CER K +K+ E E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKS++L LK + D+
Sbjct: 35 GVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDM 117
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.130e-16 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
GVC CER K +K+ E E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L LK + D+
Sbjct: 55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.020e-16 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
GVC CER K +K+ E E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L LK + D+
Sbjct: 55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.250e-16 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
GVC CER K +K+ E E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L LK + D+
Sbjct: 101 GVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 183
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.100e-15 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
G+C+ CER K +K+ E E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L LK + D+
Sbjct: 105 GICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 187
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: A0A1X7SX46_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SX46_AMPQE) HSP 1 Score: 79.3 bits (194), Expect = 2.830e-15 Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLHI 273
L C +C GK+ +QP K E H +L+LVH+D+ GP+ +S GG+R+ + F DD SR ++Y ++HKSEAL + FE + GL I
Sbjct: 343 LSFCESCIEGKMHRQPFKSSGEIHSTRKLQLVHSDVCGPMPTDSLGGKRYFVSFTDDFSRCSQIYLMKHKSEALNKFREFEAMVKNETGLSI 434
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE) HSP 1 Score: 75.1 bits (183), Expect = 2.230e-14 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 1 LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIG 264
L C AC GK+++QP K E +L+L+H+D+ GP+ ES GG ++ + F+DD SR KVY ++HKSE L K FE + G
Sbjct: 85 LPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECG 173
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC) HSP 1 Score: 74.7 bits (182), Expect = 2.280e-14 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIA 252
GV CER K +K+ E E LEL+HTD+ GP++ ES GG R+AI F DD++R R VY ++HKSE+L LK + DI+
Sbjct: 35 GVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDIS 118
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7THS2_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THS2_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 6.790e-14 Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLH 270
GVC ER K +K E + LELVHTD+ GPV+ ES GG R+AI F DD++R R +Y +RHKSE+L LK + D+ + H
Sbjct: 168 GVCGPYERAKQTKVSFGTKSRERAEKPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRMIYPMRHKSESLNCLKRYIADMKVLLRDH 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6594.14468.1 >prot_H-paniculata_contig6594.14468.1 ID=prot_H-paniculata_contig6594.14468.1|Name=mRNA_H-paniculata_contig6594.14468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVDESFGGRRFAback to top mRNA from alignment at H-paniculata_contig6594:11953..12228- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6594.14468.1 ID=mRNA_H-paniculata_contig6594.14468.1|Name=mRNA_H-paniculata_contig6594.14468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig6594:11953..12228- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6594:11953..12228- >mRNA_H-paniculata_contig6594.14468.1 ID=mRNA_H-paniculata_contig6594.14468.1|Name=mRNA_H-paniculata_contig6594.14468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig6594:11953..12228- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |