mRNA_H-paniculata_contig659.14460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig659.14460.1
Unique NamemRNA_H-paniculata_contig659.14460.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig659.14460.1 vs. uniprot
Match: D8LU69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU69_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 2.170e-71
Identity = 153/267 (57.30%), Postives = 171/267 (64.04%), Query Frame = 1 
Query:  313 RRPTPAEAAELLRRRSSVDEVIGLLAGPAAADGSYDSGSGRPQQYDPAQFDSWRNSLTKVLGHLGFDFEDENGMPVQGST---ESKRSPAKCI-----SSRGASQYLSWGGASAMSFEDNPEEFHDSLRQIPMKWRSSLSSIMNSMASNGVLEEAVGAEGGGGMD------------------------GVDVGPDGK----LTGERKRLEQQASLEMLQSVMRETLESMSQGTDNRD--TEDGEAXXXXXXXXXXXMDSIRRANAD 999
            RRPT AEAAELLRRRSSVDEVIGLL+ PAA DGS++      Q  DPAQFDSWRNSLTKVLGHLGFDFE+E G P +      + KRSP         +SRG+SQ+LSWGG SAMSFE+ PEEFH+SLRQIPM+WRSSLSSIM SMASNG  +E  GA   G                           G+DV  DG      TGERKRLEQQASLEMLQSVMRETLESMS G D  +  TEDGE            M S+ RA ++
Sbjct:   17 RRPTAAEAAELLRRRSSVDEVIGLLSAPAA-DGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGAPCEEEELGPDGKRSPTDTDKHSRHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGXXXXXXXXXXXXXXXXXXXXXXXNMGMDVSGDGGNVTGQTGERKRLEQQASLEMLQSVMRETLESMS-GADGHEASTEDGEQEAKAAATAALAMGSMCRAKSN 281
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BLAST of mRNA_H-paniculata_contig659.14460.1 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 2.770e-64
Identity = 148/259 (57.14%), Postives = 166/259 (64.09%), Query Frame = 1 
Query:  313 RRPTPAEAAELLRRRSSVDEVIGLLAGPAAADGSYDSGSGRPQQYDPAQFDSWRNSLTKVLGHLGFDFEDENGMPVQGSTESKRSPAKCISSRGASQYLSWGGASAMSFEDNPEEFHDSLRQIPMKWRSSLSSIMNSMASNGVLEEAVGAEGGGGMD-----------------------GVDVGPDGK----LTGERK-RLEQQASLEMLQSVMRETLESMSQGTDNRD--TEDGEAXXXXXXXXXXXMDSIRRANAD 999
            RRPT AEA ELLRRRSSVDEVIGLL+ PAA DGS++      Q  DPAQFDSWRNSLTKVLGHLGFDFE+E G P +             +SRG+SQ+LSWGG SAMSFE+ PEEFH+SLRQIPM+WRSSLSSIM SMASNG  +E  GA   G  +                       G+DV  DG      TGERK RLEQQASLEMLQSVMRETLESMS G D  +  TEDGE            M S+ RA ++
Sbjct:  861 RRPTTAEAVELLRRRSSVDEVIGLLSAPAA-DGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGTPCEEEELGPDGKPSRHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGNXXXXXXXXXXXXXXXXXXXXXNMGMDVTGDGGNVTGQTGERKQRLEQQASLEMLQSVMRETLESMS-GADGHEASTEDGEQEAKAAATAALAMGSMYRAKSN 1117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig659.14460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU69_ECTSI2.170e-7157.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLW3_9PHAE2.770e-6457.14HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig659contigH-paniculata_contig659:4781..8091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000450.1
Exons5
Model size1085
Cds size1056
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig659.14460.1prot_H-paniculata_contig659.14460.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig659 4781..8064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.1342347-CDS-H-paniculata_contig659:4780..50351622930776.1342347-CDS-H-paniculata_contig659:4780..5035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 4781..5035 -
1691481447.076384-CDS-H-paniculata_contig659:4780..50351691481447.076384-CDS-H-paniculata_contig659:4780..5035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 4781..5035 -
1622930776.1475806-CDS-H-paniculata_contig659:5438..56241622930776.1475806-CDS-H-paniculata_contig659:5438..5624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 5439..5624 -
1691481447.088545-CDS-H-paniculata_contig659:5438..56241691481447.088545-CDS-H-paniculata_contig659:5438..5624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 5439..5624 -
1622930776.1599245-CDS-H-paniculata_contig659:6116..62691622930776.1599245-CDS-H-paniculata_contig659:6116..6269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 6117..6269 -
1691481447.0969748-CDS-H-paniculata_contig659:6116..62691691481447.0969748-CDS-H-paniculata_contig659:6116..6269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 6117..6269 -
1622930776.1867275-CDS-H-paniculata_contig659:6936..70691622930776.1867275-CDS-H-paniculata_contig659:6936..7069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 6937..7069 -
1691481447.1054027-CDS-H-paniculata_contig659:6936..70691691481447.1054027-CDS-H-paniculata_contig659:6936..7069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 6937..7069 -
1622930776.2033515-CDS-H-paniculata_contig659:7735..80641622930776.2033515-CDS-H-paniculata_contig659:7735..8064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 7736..8064 -
1691481447.1135936-CDS-H-paniculata_contig659:7735..80641691481447.1135936-CDS-H-paniculata_contig659:7735..8064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig659 7736..8064 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.223753-UTR-H-paniculata_contig659:8064..80911622930776.223753-UTR-H-paniculata_contig659:8064..8091Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig659 8065..8091 -
1691481447.1239183-UTR-H-paniculata_contig659:8064..80911691481447.1239183-UTR-H-paniculata_contig659:8064..8091Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig659 8065..8091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig659.14460.1

>prot_H-paniculata_contig659.14460.1 ID=prot_H-paniculata_contig659.14460.1|Name=mRNA_H-paniculata_contig659.14460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=352bp
MSNNGMDSLRHLGGVMGPGVRYDGRGHPLQQRRREHDQDRSQQQHPHHRQ
QPHYTQPLRDERDGGRTDGGATGPERSGGGRHKSVPSGGMGLSPGRRPTP
AEAAELLRRRSSVDEVIGLLAGPAAADGSYDSGSGRPQQYDPAQFDSWRN
SLTKVLGHLGFDFEDENGMPVQGSTESKRSPAKCISSRGASQYLSWGGAS
AMSFEDNPEEFHDSLRQIPMKWRSSLSSIMNSMASNGVLEEAVGAEGGGG
MDGVDVGPDGKLTGERKRLEQQASLEMLQSVMRETLESMSQGTDNRDTED
GEAEAKAAAAAVCTMDSIRRANADGIAVRGGGAGGGGSGSGRGTAGSTIG
NV
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mRNA from alignment at H-paniculata_contig659:4781..8091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig659.14460.1 ID=mRNA_H-paniculata_contig659.14460.1|Name=mRNA_H-paniculata_contig659.14460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3311bp|location=Sequence derived from alignment at H-paniculata_contig659:4781..8091- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTAATGCCGGGCCGAACAACGGAATGAGTAATAACGGCATGGATAG
CTTGCGCCACCTTGGAGGAGTGATGGGACCCGGAGTACGCTATGACGGAC
GAGGGCACCCGCTTCAGCAGCGACGCCGTGAGCATGACCAAGATCGGTCG
CAACAACAGCACCCGCATCACCGCCAACAGCCGCACTACACCCAGCCGTT
GAGGGACGAACGAGATGGAGGGAGGACGGATGGTGGAGCGACAGGTCCGG
AACGGTCAGGAGGCGGCAGACACAAAAGCGTTCCGTCTGGTGGGATGGGA
CTCAGCCCGGGGCGAAGACCCACGCCTGCTGAAGCGGCCGAGCTCTTGCG
ACGAAGGTGAGATATCTGATATGTTTTGTCTCGTTTATGTGGGTGCGATG
TTTATCGTGAAACTTGCGTTGCGTTATTTGTGTAGGCCAGGGGATGTCGC
TGAAGGCAGGACTTGAATCAGATCCCTCCCTTCCTTTTATCTCTACGACG
CCTTACCGCATCTCGTTGCGTGTAGTTTTTGGCCGGTCTGCTGGGTTGTA
TATGCGGGCTGATAGGCCACTTTGTATCCTATGCAAGTGTCATTGCATGT
ATATAGTCCATGCACCAGCGTATGGCAGGCGATCAACGTTCCAGCATCAT
TTTGTCGGATAAAGTGATGTGTTCGTCTTACACAGGTTCAGTGTCCACCG
GACATGTATGCTTGATTCACGTGATGCATATTACGACTGCCCAGACTCGT
AAAATATTTTTCAAGTACGATGGATAACAACAAATATCCCGTAAAGTGCT
AGACAATGACATGATACACCCTTATTACCCCCCTCCCCGAAAAAAATAAC
CCTTTCTGCTTCAGCCTTGCCTTTTGTGACATTCGTTGTGTACACCGTAT
ATTTTAGTCATCACCTGGCGTCGCGCTTTCTGGGTGTTGACTGCTTTTTT
GTTTTGTTTAAAAAAACTAACGTTGTTCTTCACTTGACAATTGTTGGCAC
TCCTTGAACCTCTGACCGTAAGATCTTCTGTCGACGAGGTCATTGGGCTC
CTCGCTGGTCCAGCAGCAGCGGATGGCAGCTATGACTCAGGGAGTGGACG
ACCGCAGCAATATGACCCCGCACAGTTTGACAGCTGGCGAAACTCCCTTA
CGAAAGTGGGTTCTGACTTAACGAAATGCATGATGATCGTGACTCTTGCT
ACGCTCGTGCGCGTACGCGTAGCTCTCTACATTTCAGGCCTAATGTTCTG
TCAGGAGATGGTCCATACATAATCCGCCGTGCAGTGGAGGCGAACTTGTT
CTACTTACGAAGTATATCGTGCAGTCATACAAACTCCATTGTCCATGTAT
CAAGGATCACAACTCACGCACAACGGATCGCTGTGCTCGCATGTAGGAAA
AAAGTCCATGAAAATCCGTTTCATAAGTAACTCGATACTCAAAGGTGAGA
AAGGTTCGTCAGTTGACCGCATTAAACAAAACTCGTGCACAGTACAGGTC
TTTTGTGAGATCTGCTGCCCCTCTCTGTCGCGCTTATTTTTTTTCCTGTT
TCGTCTATCACTGATTCCATATCCTAAGTATATCGCTGTACTCGACCCTG
CCCACGCCCGAACGGCCGCAATGTGTAATGTATGACGTTTAGCAGTATGT
CCTATTCGTGTACGTGTTTCCTCACGTCGTGTGCACTGCATCTCTCACGC
ACATGTTGTTGCACGCGTCACCAGACGCAAATGACCATGACTACAAACCA
AACTGAATGATGACACCCAATATTTGTCATTGTTTCACCCACGGCGTTTG
TTTCGTTTTTGTGCTGCTGCAGGTCCTTGGTCACCTCGGTTTCGACTTTG
AAGATGAGAATGGCATGCCTGTTCAAGGTAGTACTGAGAGCAAGCGTTCC
CCAGCCAAGTGCATTTCAAGTCGCGGGGCTTCCCAGTACCTCAGCTGGGG
TGGTGCTTCCGCCATGTCGTTCGAGGTATAATTAGTTCCTTTAAAACGTT
GTTTTCATCCCCCAACAAAATTAGTCTTGATCCCACAATGGTGATATGTT
CAACGTGGTAAACTCGCTCCATTAATTCTCCTTGTTTTGCGCGCTCCTCA
CCCTTGCAGCTCGTTATATCATCACCATGGATGAGGTTTTTGAATGACCA
TGTACATTGAAGTTCAGGCAAGTGTGATGCTATCGTTGAATGCATTCGCA
GTGCTATGCGGCACACCGGTGATTCGCAATAGCAAGTGCGTGACGGACAG
AGACAACAGCTGAGTCATATTTCGTCAGCGAGTATTGTAGATGTGTCGTT
AGACTTTCACACTGATGATGGCAATGATCCTTCGTGCGTGGTGTACCATG
CTCCTCCAACCCTCGTAGTCGACCAACGGTCAACACCAATGGAGAAGTCG
CGTCTTTTCTTCGCGTTCCGTTCGGTTTTTTTTATGATACTGAATTTGGC
GCACACTGCCATAACAGGATAATCCCGAAGAGTTTCACGATAGTCTACGG
CAAATCCCGATGAAATGGCGATCGTCGCTGTCGAGCATCATGAATTCGAT
GGCATCCAATGGGGTGTTGGAGGAAGCGGTCGGCGCGGAAGGTGGAGGTG
GTATGGACGGCGTGGACGTTGGTCCTGATGGAAAGCTTACAGGAGAGAGA
AAGGCGAGACGACGTCTACCAGACAAAATAACAACAGCGTCACGCGTTCG
AACGATTGGCACATGTGATACTTACTATCCGCACGTTTATGTCTTGGATC
GTCCCTCCTTTTCTTGTTGCTATAGTTTTTGCGAATCCGTTGATTGTTAC
TGCATGCCTCAAGCCGTAGCATCTCATTTTGTTCAGCATCGAAATAGCCA
TGTATGTACACCAGCCCAGTGATCTTGGTCACTATCGACATGCTGCACAA
AATTTGTAGGGATCATGTCCATCGAGAGAAGTATGAGTCAGTTACGCTCT
AACTACAAGCAATGTCGGTGCCATTCTTCCTTACCTAGTCGCCACCTTAC
CCCCCCCCCATCCCCTCTCACCAACCCTGACATCGAACCAAATCCACCAT
AAGCAGCGCCTAGAGCAGCAAGCATCGCTAGAGATGCTACAGTCCGTAAT
GCGAGAGACCCTGGAGAGCATGTCGCAAGGCACGGATAACCGAGATACCG
AAGACGGAGAGGCAGAGGCGAAAGCCGCAGCAGCAGCCGTGTGTACGATG
GACTCAATCCGCCGGGCCAACGCCGATGGCATAGCTGTCCGCGGTGGGGG
CGCCGGCGGAGGTGGTAGCGGCAGCGGTCGGGGCACAGCGGGAAGCACCA
TCGGAAATGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig659:4781..8091-

>mRNA_H-paniculata_contig659.14460.1 ID=mRNA_H-paniculata_contig659.14460.1|Name=mRNA_H-paniculata_contig659.14460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at H-paniculata_contig659:4781..8091- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAATAACGGCATGGATAGCTTGCGCCACCTTGGAGGAGTGATGGG
ACCCGGAGTACGCTATGACGGACGAGGGCACCCGCTTCAGCAGCGACGCC
GTGAGCATGACCAAGATCGGTCGCAACAACAGCACCCGCATCACCGCCAA
CAGCCGCACTACACCCAGCCGTTGAGGGACGAACGAGATGGAGGGAGGAC
GGATGGTGGAGCGACAGGTCCGGAACGGTCAGGAGGCGGCAGACACAAAA
GCGTTCCGTCTGGTGGGATGGGACTCAGCCCGGGGCGAAGACCCACGCCT
GCTGAAGCGGCCGAGCTCTTGCGACGAAGATGAGTAATAACGGCATGGAT
AGCTTGCGCCACCTTGGAGGAGTGATGGGACCCGGAGTACGCTATGACGG
ACGAGGGCACCCGCTTCAGCAGCGACGCCGTGAGCATGACCAAGATCGGT
CGCAACAACAGCACCCGCATCACCGCCAACAGCCGCACTACACCCAGCCG
TTGAGGGACGAACGAGATGGAGGGAGGACGGATGGTGGAGCGACAGGTCC
GGAACGGTCAGGAGGCGGCAGACACAAAAGCGTTCCGTCTGGTGGGATGG
GACTCAGCCCGGGGCGAAGACCCACGCCTGCTGAAGCGGCCGAGCTCTTG
CGACGAAGATCTTCTGTCGACGAGGTCATTGGGCTCCTCGCTGGTCCAGC
AGCAGCGGATGGCAGCTATGACTCAGGGAGTGGACGACCGCAGCAATATG
ACCCCGCACAGTTTGACAGCTGGCGAAACTCCCTTACGAAAATCTTCTGT
CGACGAGGTCATTGGGCTCCTCGCTGGTCCAGCAGCAGCGGATGGCAGCT
ATGACTCAGGGAGTGGACGACCGCAGCAATATGACCCCGCACAGTTTGAC
AGCTGGCGAAACTCCCTTACGAAAGTCCTTGGTCACCTCGGTTTCGACTT
TGAAGATGAGAATGGCATGCCTGTTCAAGGTAGTACTGAGAGCAAGCGTT
CCCCAGCCAAGTGCATTTCAAGTCGCGGGGCTTCCCAGTACCTCAGCTGG
GGTGGTGCTTCCGCCATGTCGTTCGAGGTCCTTGGTCACCTCGGTTTCGA
CTTTGAAGATGAGAATGGCATGCCTGTTCAAGGTAGTACTGAGAGCAAGC
GTTCCCCAGCCAAGTGCATTTCAAGTCGCGGGGCTTCCCAGTACCTCAGC
TGGGGTGGTGCTTCCGCCATGTCGTTCGAGGATAATCCCGAAGAGTTTCA
CGATAGTCTACGGCAAATCCCGATGAAATGGCGATCGTCGCTGTCGAGCA
TCATGAATTCGATGGCATCCAATGGGGTGTTGGAGGAAGCGGTCGGCGCG
GAAGGTGGAGGTGGTATGGACGGCGTGGACGTTGGTCCTGATGGAAAGCT
TACAGGAGAGAGAAAGGATAATCCCGAAGAGTTTCACGATAGTCTACGGC
AAATCCCGATGAAATGGCGATCGTCGCTGTCGAGCATCATGAATTCGATG
GCATCCAATGGGGTGTTGGAGGAAGCGGTCGGCGCGGAAGGTGGAGGTGG
TATGGACGGCGTGGACGTTGGTCCTGATGGAAAGCTTACAGGAGAGAGAA
AGCGCCTAGAGCAGCAAGCATCGCTAGAGATGCTACAGTCCGTAATGCGA
GAGACCCTGGAGAGCATGTCGCAAGGCACGGATAACCGAGATACCGAAGA
CGGAGAGGCAGAGGCGAAAGCCGCAGCAGCAGCCGTGTGTACGATGGACT
CAATCCGCCGGGCCAACGCCGATGGCATAGCTGTCCGCGGTGGGGGCGCC
GGCGGAGGTGGTAGCGGCAGCGGTCGGGGCACAGCGGGAAGCACCATCGG
AAATGTCCGCCTAGAGCAGCAAGCATCGCTAGAGATGCTACAGTCCGTAA
TGCGAGAGACCCTGGAGAGCATGTCGCAAGGCACGGATAACCGAGATACC
GAAGACGGAGAGGCAGAGGCGAAAGCCGCAGCAGCAGCCGTGTGTACGAT
GGACTCAATCCGCCGGGCCAACGCCGATGGCATAGCTGTCCGCGGTGGGG
GCGCCGGCGGAGGTGGTAGCGGCAGCGGTCGGGGCACAGCGGGAAGCACC
ATCGGAAATGTC
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