mRNA_H-paniculata_contig65299.14382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65299.14382.1
Unique NamemRNA_H-paniculata_contig65299.14382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: A0A0J8BG93_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BG93_BETVV)

HSP 1 Score: 57.8 bits (138), Expect = 1.470e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 TVSWRQRGGRYTVRAGRNLPDKEFRFLRTIIV---IYR 105
            ++ WRQRG RY +RAGRNLPDKEFR+LRT+IV   +YR
Sbjct:   13 SLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYR 50          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: H6SIA9_PARPM (Uncharacterized protein (Fragment) n=2 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIA9_PARPM)

HSP 1 Score: 57.0 bits (136), Expect = 4.380e-9
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   10 WRQRGGRYTVRAGRNLPDKEFRFLRTIIV---IYR 105
            WRQRG RY +RAGRNLPDKEFR+LRT+IV   +YR
Sbjct:  100 WRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYR 134          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: A0A6A5LBS9_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LBS9_LUPAL)

HSP 1 Score: 57.4 bits (137), Expect = 1.770e-8
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1
Query:    1 TVSWRQRGGRYTVRAGRNLPDKEFRFLRTIIV 96
            ++ WRQRG RY +RAGRNLPDKEFR+LRT+IV
Sbjct:  308 SLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIV 339          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 57.4 bits (137), Expect = 1.770e-8
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1
Query:    1 TVSWRQRGGRYTVRAGRNLPDKEFRFLRTIIV 96
            ++ WRQRG RY +RAGRNLPDKEFR+LRT+IV
Sbjct:  426 SLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIV 457          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: H6SIE1_PARPM (Putative glycosyl transferase (Glycosyl transferase family 2) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE1_PARPM)

HSP 1 Score: 57.0 bits (136), Expect = 1.840e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   10 WRQRGGRYTVRAGRNLPDKEFRFLRTIIV---IYR 105
            WRQRG RY +RAGRNLPDKEFR+LRT+IV   +YR
Sbjct:  219 WRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYR 253          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: A0A381VFD6_9ZZZZ (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A381VFD6_9ZZZZ)

HSP 1 Score: 53.9 bits (128), Expect = 1.940e-8
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    1 TVSWRQRGGRYTVRAGRNLPDKEFRFLRTIIV 96
            ++ WRQ G RY +RAGRNLPDKEFR+LRT+IV
Sbjct:   29 SLGWRQCGRRYAIRAGRNLPDKEFRYLRTVIV 60          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: Q1R3T7_ECOUT (Uncharacterized protein n=2 Tax=Escherichia coli (strain UTI89 / UPEC) TaxID=364106 RepID=Q1R3T7_ECOUT)

HSP 1 Score: 52.8 bits (125), Expect = 5.540e-8
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 TVSWRQRGGRYTVRAGRNLPDKEFRFLRTIIV---IYR 105
            ++ WRQ G  Y +RAGRNLPDKEFR+LRT+IV   +YR
Sbjct:   29 SLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYR 66          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: A0A090VZ51_PSEVU (Uncharacterized protein n=4 Tax=Enterobacteriaceae TaxID=543 RepID=A0A090VZ51_PSEVU)

HSP 1 Score: 52.8 bits (125), Expect = 9.510e-8
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 TVSWRQRGGRYTVRAGRNLPDKEFRFLRTIIV---IYR 105
            ++ WRQ G  Y +RAGRNLPDKEFR+LRT+IV   +YR
Sbjct:   53 SLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYR 90          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: A0A381WPF1_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381WPF1_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 1.030e-7
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    7 SWRQRGGRYTVRAGRNLPDKEFRFLRTIIV 96
            S RQR GRYT+RAGRNLPDK FR+LRT+IV
Sbjct:   55 SLRQRSGRYTIRAGRNLPDKGFRYLRTVIV 84          
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Match: K9IR67_DESRO (Putative conserved protein with signal anchor (Fragment) n=1 Tax=Desmodus rotundus TaxID=9430 RepID=K9IR67_DESRO)

HSP 1 Score: 51.2 bits (121), Expect = 2.760e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   13 RQRGGRYTVRAGRNLPDKEFRFLRTIIVIYRYPCGL 120
            RQRG RY++RAGRNLPDKEFR+LR +IV      GL
Sbjct:   19 RQRGSRYSIRAGRNLPDKEFRYLRMVIVTTAVYWGL 54          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65299.14382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J8BG93_BETVV1.470e-968.42Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
H6SIA9_PARPM4.380e-974.29Uncharacterized protein (Fragment) n=2 Tax=Pararho... [more]
A0A6A5LBS9_LUPAL1.770e-875.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L965_LUPAL1.770e-875.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
H6SIE1_PARPM1.840e-874.29Putative glycosyl transferase (Glycosyl transferas... [more]
A0A381VFD6_9ZZZZ1.940e-871.88Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
Q1R3T7_ECOUT5.540e-863.16Uncharacterized protein n=2 Tax=Escherichia coli (... [more]
A0A090VZ51_PSEVU9.510e-863.16Uncharacterized protein n=4 Tax=Enterobacteriaceae... [more]
A0A381WPF1_9ZZZZ1.030e-780.00Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
K9IR67_DESRO2.760e-766.67Putative conserved protein with signal anchor (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65299contigH-paniculata_contig65299:561..683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930765.24678-CDS-H-paniculata_contig65299:560..6831622930765.24678-CDS-H-paniculata_contig65299:560..683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65299 561..683 +
1691481442.2791517-CDS-H-paniculata_contig65299:560..6831691481442.2791517-CDS-H-paniculata_contig65299:560..683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65299 561..683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65299.14382.1prot_H-paniculata_contig65299.14382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65299 561..683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65299.14382.1

>prot_H-paniculata_contig65299.14382.1 ID=prot_H-paniculata_contig65299.14382.1|Name=mRNA_H-paniculata_contig65299.14382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
TVSWRQRGGRYTVRAGRNLPDKEFRFLRTIIVIYRYPCGL*
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mRNA from alignment at H-paniculata_contig65299:561..683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65299.14382.1 ID=mRNA_H-paniculata_contig65299.14382.1|Name=mRNA_H-paniculata_contig65299.14382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig65299:561..683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGTCTCTTGGAGACAGCGAGGAGGTCGTTACACCGTTCGTGCGGGTCG GAACTTACCCGACAAGGAATTTCGCTTCCTTAGGACTATTATTGTGATAT ACAGATATCCGTGTGGCTTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig65299:561..683+

>mRNA_H-paniculata_contig65299.14382.1 ID=mRNA_H-paniculata_contig65299.14382.1|Name=mRNA_H-paniculata_contig65299.14382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig65299:561..683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGTCTCTTGGAGACAGCGAGGAGGTCGTTACACCGTTCGTGCGGGTCG
GAACTTACCCGACAAGGAATTTCGCTTCCTTAGGACTATTATTGTGATAT
ACAGATATCCGTGTGGCTTGTGAACTGTCTCTTGGAGACAGCGAGGAGGT
CGTTACACCGTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTT
CCTTAGGACTATTATTGTGATATACAGATATCCGTGTGGCTTGTGA
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