mRNA_H-paniculata_contig6527.14379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6527.14379.1
Unique NamemRNA_H-paniculata_contig6527.14379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 6.590e-100
Identity = 171/422 (40.52%), Postives = 254/422 (60.19%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIIT----------------------------MYEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSFE 1179
            VD+    +P  +++ +K+ +AV  E    +   DVKQAF  A L+ +VF++L  GCG KS ++V+  +A+YG K +GR W     + L+ + G  Q K+DPCVF   K+ VV        D ++VAG   +C  L A+L   F     GE  W+ G A  RD+  G + I+Q  ++D+++  FDV++ S++PAS   D+GP+R++E   + PVR A+G+++W+S   RPDI+ AVRAVAR AH+P +RHWKA+ KI++YLK T+DLG+ +ERG  L L+VYV+A YAD  + RRSVSG+   +GG+V+S  S TQ  V+LS++EAE I                             + ED++GA A+ +NP S+  SKHI+VRYHFIR L       +K+    +Q AD+LTK L + S +
Sbjct:   79 VDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQ 498          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 1.580e-98
Identity = 176/422 (41.71%), Postives = 263/422 (62.32%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIIT----------------------------MYEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSFE 1179
            VD+    +P  +++ +K+ +AV  E    +   DVKQA+  A L+ EVF+KL  GCG+KS +I +  +A+YG K +GR W     + L+ + G  Q K+DPCVF    + VV MI+ +++DD++VAG   +C+ L A+L  +F     GE +W+ G A  RD+  G + I+Q  ++D++++ FDV++ S +PA+  ADLGP+RE+E+  + PVR A+G+++W+S   RPD++ AVRAVAR AH+P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYV+A YAD  + RRSVSG+   +GG+VVS  S TQ  V+LS++EAE I                             + ED++GA A+ +NP S+G +KHI+VRYHFIR L       VK+    +Q AD+LTK L R S +
Sbjct:  816 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQ 1235          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 1.920e-97
Identity = 176/422 (41.71%), Postives = 263/422 (62.32%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIIT----------------------------MYEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSFE 1179
            VD+    +P  +++ +K+ +AV  E    +   DVKQA+  A L+ EVF+KL  GCG+KS +I +  +A+YG K +GR W     + L+ + G  Q K+DPCVF    + VV MI+ +++DD++VAG   +C+ L A+L  +F     GE +W+ G A  RD+  G + I+Q  ++D++++ FDV++ S +PA+  ADLGP+RE+E+  + PVR A+G+++W+S   RPD++ AVRAVAR AH+P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYV+A YAD  + RRSVSG+   +GG+VVS  S TQ  V+LS++EAE I                             + ED++GA A+ +NP S+G +KHI+VRYHFIR L       VK+    +Q AD+LTK L R S +
Sbjct: 1195 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQ 1614          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 2.260e-97
Identity = 171/415 (41.20%), Postives = 258/415 (62.17%), Query Frame = 1
Query:   22 APTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIIT----------------------------MYEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSFE 1179
            +P  +++ +K+ +AV  E    +   DVKQA+  A L+ EVF+KL  GCG+KS +I +  +A+YG K +GR W     + L+ + G  Q K+DPCVF    + VV MI+ +++DD++VAG   +C+ L A+L  +F     GE +W+ G A  RD+  G + I+Q  ++D++++ FDV++ S +PA+  ADLGP+RE++   + PVR AVG+++W+S   RPD++ AVRAVAR AH+P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYV+A YAD  + RRSVS +   +GG+VVS  S  +  V+LS++EAE I                             + ED++GA A+ +NP S+GG KHI+VR+HFIR L     + VK+    +Q ADILT+ L R S +
Sbjct:  414 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQ 826          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.640e-97
Identity = 176/422 (41.71%), Postives = 263/422 (62.32%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIIT----------------------------MYEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSFE 1179
            VD+    +P  +++ +K+ +AV  E    +   DVKQA+  A L+ EVF+KL  GCG+KS +I +  +A+YG K +GR W     + L+ + G  Q K+DPCVF    + VV MI+ +++DD++VAG   +C+ L A+L  +F     GE +W+ G A  RD+  G + I+Q  ++D++++ FDV++ S +PA+  ADLGP+RE+E+  + PVR A+G+++W+S   RPD++ AVRAVAR AH+P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYV+A YAD  + RRSVSG+   +GG+VVS  S TQ  V+LS++EAE I                             + ED++GA A+ +NP S+G +KHI+VRYHFIR L       VK+    +Q AD+LTK L R S +
Sbjct: 1358 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQ 1777          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 5.860e-97
Identity = 175/418 (41.87%), Postives = 261/418 (62.44%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIIT----------------------------MYEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLER 1167
            VD+    +P  +++ +K+ +AV  E    +   DVKQA+  A L+ EVF+KL  GCG+KS +I +  +A+YG K +GR W     + L+ + G  Q K+DPCVF    + VV MI+ +++DD++VAG   +C+ L A+L  +F     GE +W+ G A  RD+  G + I+Q  ++D++++ FDV++ S +PA+  ADLGP+RE+E+  + PVR A+G+++W+S   RPD++ AVRAVAR AH+P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYV+A YAD  + RRSVSG+   +GG+VVS  S TQ  V+LS++EAE I                             + ED++GA A+ +NP S+G +KHI+VRYHFIR L       VK+    +Q AD+LTK L R
Sbjct: 1215 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSR 1630          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 1.100e-93
Identity = 173/424 (40.80%), Postives = 242/424 (57.08%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGR--DLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIITM----------------------------YEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSFE 1179
            VD  E +APTVA S V++  A+  E +  +   D+KQAF+Q++L+ +VF++L EGCG  SG IV+LNK++YG K A R W   L   L+  +G  Q  +D CVF L + G V + L VH+DD+   G+   CD     L         G+L+WY G  + RD   G + I+Q+T+ + +   F VE    +P      L    ++E++   P R  +G+L+WL+   RPDIA+AVRAVAR   SP + HW+A   I+ Y+ RT DLG+ F RG    LS+ V+V+ADYA K+  RRSVSG +VM GG  +S  S TQ CVTLST+EAE +++                            +ED++GA  +A+NP S   SKHI+VR+HFIREL  RK   + + +   Q AD LTK L  G FE
Sbjct:    6 VDCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFE 428          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 2.460e-92
Identity = 170/423 (40.19%), Postives = 240/423 (56.74%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERG--RDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIITM----------------------------YEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSF 1176
            +DF E+FAPTV+ S V++  A+  E +  +   D++QAF+Q+ L+ +VF++L +GCG  SG IV+L K++YG K A R W   L   LL  +G  Q  +D CVF L + G V MI+ VH+DD+   G+   CD     L         GEL+WY    + RD+ RG + I+Q+ F + +   + +E   ++P      L    ENE  +D P R  VG+L+WL+   RPDIA+AVRAVAR   SP   HWKA   I+ Y++RT  +G+ FERG    +S+ V+V+ADYA K+  RRSVSG +VM GG  V+  S TQ CVTLST+EAE + +                            +ED++GA  +A NP +   SKHI+VR+HFIREL  RK   + +     Q AD LTK + + S 
Sbjct:    6 IDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLL-LGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESL 427          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 8.350e-92
Identity = 163/397 (41.06%), Postives = 243/397 (61.21%), Query Frame = 1
Query:    1 VDFLEVFAPTVAASGVKMEIAVTVENDWGMWQLDVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTS-------EAEIITMYE---------------------------DDEGANAMAENPTSAGGSKHIEVRYHFIREL 1086
            VD+    +P  +++ +K+ +AV  E    +   DVKQA+  A L+ EVF+KL  GCG+KS  I +  +A+YG K +GR W     + L+ + G  Q K+DPCVF    + VV MI+ +++DD++VAG   +C+ L A+L  +F      E +W+ G A  RD+  G + I+Q  ++D+++K FDV++ S +PAS   DLGP+R++E   + PVR A+G+++W+S   RPD++ AVRAVAR AH+P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYV+A YAD  + RRSVSG+   +GG+VVS  S TQ  V+LS++       EAE  T  E                           D++GA A+ +NP S+G +KHI+VR+HFIR L
Sbjct:  370 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVLDNQGAMALVQNPLSSGRTKHIDVRFHFIRVL 764          
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 3.480e-91
Identity = 165/390 (42.31%), Postives = 243/390 (62.31%), Query Frame = 1
Query:  100 DVKQAFIQANLEIEVFIKLSEGCGNKSGRIVRLNKAMYGRKHAGRMWS*RLVEVLLNHVGMTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEFQATR-GELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPASQQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHSPTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRRSVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIIT----------------------------MYEDDEGANAMAENPTSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLER-GSFE 1179
            DVKQA+  A L+ EV ++L  GCG+KS +IV+  +A+YG K +GR W   + + L+ + G  Q K+DPCVF    N VV +I+ +++DD++VAG   +C+ L A+L  +F     GE +W  G A  RD+  G   I+Q   +D+++K FDV++   +PAS   DLGP+R++E   + PVR A+G+++W+S   RPD++ AVRAVAR AH+P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYV+A YAD  + + S+SG+   +GG+VVS  S TQ  V+LS++EAE I                             +++D++GA A+ +NP S+G +KHI+VRYHFIR L       VK+    +Q AD+LTK L R GS E
Sbjct:  445 DVKQAYTHATLDEEVLLRLPAGCGDKSHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGEREWSDGCAIERDVQAGTFHISQTANIDSMMKRFDVQSTFRIPASPGVDLGPKRDDEKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-KHSLSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVSAVLSLIAPETSGSSIQVFQDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVGSCE 832          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6527.14379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE6.590e-10040.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.580e-9841.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.920e-9741.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE2.260e-9741.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF60_9PHAE2.640e-9741.71Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE5.860e-9741.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.100e-9340.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE2.460e-9240.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE8.350e-9241.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSK5_9PHAE3.480e-9142.31Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6527contigH-paniculata_contig6527:11263..12525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score179.5
Seed ortholog evalue2.3e-42
Seed eggNOG ortholog7029.ACYPI066108-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs396RY@33154,3C358@33208,3DI66@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size1179
Cds size900
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6527.14379.1prot_H-paniculata_contig6527.14379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6527 11263..12246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930764.9786148-CDS-H-paniculata_contig6527:11262..114671622930764.9786148-CDS-H-paniculata_contig6527:11262..11467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6527 11263..11467 -
1691481442.114307-CDS-H-paniculata_contig6527:11262..114671691481442.114307-CDS-H-paniculata_contig6527:11262..11467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6527 11263..11467 -
1622930764.9948826-CDS-H-paniculata_contig6527:11551..122461622930764.9948826-CDS-H-paniculata_contig6527:11551..12246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6527 11552..12246 -
1691481442.1278157-CDS-H-paniculata_contig6527:11551..122461691481442.1278157-CDS-H-paniculata_contig6527:11551..12246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6527 11552..12246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930765.0079808-UTR-H-paniculata_contig6527:12246..125251622930765.0079808-UTR-H-paniculata_contig6527:12246..12525Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6527 12247..12525 -
1691481442.1366615-UTR-H-paniculata_contig6527:12246..125251691481442.1366615-UTR-H-paniculata_contig6527:12246..12525Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6527 12247..12525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6527.14379.1

>prot_H-paniculata_contig6527.14379.1 ID=prot_H-paniculata_contig6527.14379.1|Name=mRNA_H-paniculata_contig6527.14379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=300bp
MTQSKSDPCVFWLEKNGVVDMILCVHIDDVIVAGKSVECDSLFAALRAEF
QATRGELKWYLGYAFWRDIVRGAVCITQRTFVDTVIKHFDVETESNLPAS
QQADLGPRRENEDLSDTPVRSAVGNLIWLSGMKRPDIASAVRAVARQAHS
PTDRHWKAVAKIISYLKRTKDLGLVFERGRDLSLSVYVEADYADKSNWRR
SVSGVIVMLGGSVVSATSTTQHCVTLSTSEAEIITMYEDDEGANAMAENP
TSAGGSKHIEVRYHFIRELTARKVSRVKYNKGEDQPADILTKPLERGSFE
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mRNA from alignment at H-paniculata_contig6527:11263..12525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6527.14379.1 ID=mRNA_H-paniculata_contig6527.14379.1|Name=mRNA_H-paniculata_contig6527.14379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1263bp|location=Sequence derived from alignment at H-paniculata_contig6527:11263..12525- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGATTTTCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCCGGTGTGAA GATGGAAATTGCTGTTACTGTCGAAAACGACTGGGGAATGTGGCAACTTG ATGTAAAACAGGCTTTTATTCAGGCGAATTTAGAAATCGAGGTGTTCATA AAGCTTTCAGAGGGTTGCGGGAACAAGAGCGGTAGGATAGTAAGGCTGAA TAAGGCTATGTATGGGCGCAAGCATGCAGGACGGATGTGGTCATAGCGCC TTGTAGAAGTACTCTTAAACCACGTCGGCATGACGCAATCCAAGTCTGAC CCCTGTGTGTTTTGGCTCGAGAAAAATGGGGTGGTAGATATGATTCTGTG TGTTCATATAGATGATGTAATTGTTGCTGGTAAAAGTGTGGAGTGCGATT CCCTGTTTGCGGCGTTGAGGGCGGAGTTCCAAGCCACGAGAGGCGAGCTC AAGTGGTACCTGGGTTACGCATTTTGGCGCGACATAGTGAGGGGGGCTGT CTGCATCACGCAACGGACATTCGTTGATACTGTCATTAAACACTTTGACG TGGAAACCGAGTCTAACCTTCCTGCCTCTCAGCAGGCAGATCTTGGGCCT AGGAGGGAGAATGAGGATTTGTCTGATACGCCTGTGCGCTCGGCTGTTGG GAATTTGATATGGTTAAGTGGTATGAAGAGACCCGACATAGCCAGTGCAG TACGGGCAGTAGCGAGGCAAGCCCACAGTCCGACGGATAGGCACTGGAAA GCAGTGGCAAAGATCATCTCGTATCTCAAGAGAACGAAAGACTTGGGGCT AGTGTTCGAAAGGGGTAGAGATCTTAGTCTGTCAGTGTATGTAGAGGCAG ATTATGCGGATAAGTCCAACTGGAGGCGTTCAGTGTCAGGCGTGATAGTA ATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGCACGACACAACACTGTGT GACTCTTTCCACTAGTGAGGCAGAGTATGTAGCTATGGCGCAAGGGGCTA AGGCAGCACTTTTCACGAGAGCCGTGCTAGAGTTCTTGCAGCCGTAACTT TCTGGTAGGATAATTACGATGTACGAAGACGATGAGGGGGCAAACGCTAT GGCTGAGAATCCAACTAGTGCGGGTGGGAGCAAGCACATAGAAGTAAGGT ATCACTTCATTCGAGAGTTGACTGCGAGGAAAGTATCGAGGGTAAAATAC AACAAGGGTGAGGACCAACCGGCCGACATTCTGACCAAACCACTCGAGCG CGGGTCGTTTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6527:11263..12525-

>mRNA_H-paniculata_contig6527.14379.1 ID=mRNA_H-paniculata_contig6527.14379.1|Name=mRNA_H-paniculata_contig6527.14379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at H-paniculata_contig6527:11263..12525- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCAATCCAAGTCTGACCCCTGTGTGTTTTGGCTCGAGAAAAATGG
GGTGGTAGATATGATTCTGTGTGTTCATATAGATGATGTAATTGTTGCTG
GTAAAAGTGTGGAGTGCGATTCCCTGTTTGCGGCGTTGAGGGCGGAGTTC
CAAGCCACGAGAGGCGAGCTCAAGTGGTACCTGGGTTACGCATTTTGGCG
CGACATAGTGAGGGGGGCTGTCTGCATCACGCAACGGACATTCGTTGATA
CTGTCATTAAACACTTTGACGTGGAAACCGAGTCTAACCTTCCTGCCTCT
CAGCAGGCAGATCTTGGGCCTAGGAGGGAGAATGAGGATTTGTCTGATAC
GCCTGTGCGCTCGGCTGTTGGGAATTTGATATGGTTAAGTGGTATGAAGA
GACCCGACATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCCCACAGT
CCGACGGATAGGCACTGGAAAGCAGTGGCAAAGATCATCTCGTATCTCAA
GAGAACGAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAGTC
TGTCAGTGTATGTAGAGGCAGATTATGCGGATAAGTCCAACTGGAGGCGT
TCAGTGTCAGGCGTGATAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTAC
CAGCACGACACAACACTGTGTGACTCTTTCCACTAGTGAGGCAGAATGAC
GCAATCCAAGTCTGACCCCTGTGTGTTTTGGCTCGAGAAAAATGGGGTGG
TAGATATGATTCTGTGTGTTCATATAGATGATGTAATTGTTGCTGGTAAA
AGTGTGGAGTGCGATTCCCTGTTTGCGGCGTTGAGGGCGGAGTTCCAAGC
CACGAGAGGCGAGCTCAAGTGGTACCTGGGTTACGCATTTTGGCGCGACA
TAGTGAGGGGGGCTGTCTGCATCACGCAACGGACATTCGTTGATACTGTC
ATTAAACACTTTGACGTGGAAACCGAGTCTAACCTTCCTGCCTCTCAGCA
GGCAGATCTTGGGCCTAGGAGGGAGAATGAGGATTTGTCTGATACGCCTG
TGCGCTCGGCTGTTGGGAATTTGATATGGTTAAGTGGTATGAAGAGACCC
GACATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCCCACAGTCCGAC
GGATAGGCACTGGAAAGCAGTGGCAAAGATCATCTCGTATCTCAAGAGAA
CGAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAGTCTGTCA
GTGTATGTAGAGGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAGT
GTCAGGCGTGATAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGCA
CGACACAACACTGTGTGACTCTTTCCACTAGTGAGGCAGAGATAATTACG
ATGTACGAAGACGATGAGGGGGCAAACGCTATGGCTGAGAATCCAACTAG
TGCGGGTGGGAGCAAGCACATAGAAGTAAGGTATCACTTCATTCGAGAGT
TGACTGCGAGGAAAGTATCGAGGGTAAAATACAACAAGGGTGAGGACCAA
CCGGCCGACATTCTGACCAAACCACTCGAGCGCGGGTCGTTTGAAGATAA
TTACGATGTACGAAGACGATGAGGGGGCAAACGCTATGGCTGAGAATCCA
ACTAGTGCGGGTGGGAGCAAGCACATAGAAGTAAGGTATCACTTCATTCG
AGAGTTGACTGCGAGGAAAGTATCGAGGGTAAAATACAACAAGGGTGAGG
ACCAACCGGCCGACATTCTGACCAAACCACTCGAGCGCGGGTCGTTTGAA
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