mRNA_H-paniculata_contig65198.14370.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65198.14370.1
Unique NamemRNA_H-paniculata_contig65198.14370.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: UPI0010A370EF (ubiquitin carboxyl-terminal hydrolase 23 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A370EF)

HSP 1 Score: 55.8 bits (133), Expect = 7.110e-8
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKV 126
            Y L+ V+VH G +  SGHYY Y+RTA+N WY +DD+ VS V
Sbjct:  347 YSLYGVLVHSGSSTHSGHYYCYVRTANNMWYTLDDNRVSHV 387          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: A0A834X400_9FABA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834X400_9FABA)

HSP 1 Score: 55.5 bits (132), Expect = 9.730e-8
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKV 126
            Y L+ V+VH G    SGHYY Y+RTA+N WY +DD+ VS V
Sbjct:  413 YSLYGVLVHSGSNTHSGHYYCYVRTANNMWYTLDDNRVSHV 453          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: A9V415_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V415_MONBE)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVS 120
            Y L++V+VH G ++QSGHYY Y+R ++N WY+MDD  VS
Sbjct:  453 YRLYAVLVHAGHSLQSGHYYCYVRNSNNIWYRMDDARVS 491          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: A0A1D1W2X0_RAMVA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1W2X0_RAMVA)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVS 120
            Y L+ V+VH G +  SGHYYS+IRTA N WY+MDD+ VS
Sbjct:  476 YKLYGVLVHSGGSCHSGHYYSFIRTAVNTWYRMDDNYVS 514          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: A0A2R6PCW9_ACTCC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6PCW9_ACTCC)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 22/42 (52.38%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKVK 129
            Y L++V+VH GL+  SGHYYS++R+A +AWY++DD  V++V+
Sbjct:  393 YDLYAVVVHTGLSSTSGHYYSFVRSARDAWYRLDDSKVARVQ 434          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: UPI00125E4F70 (ubiquitin carboxyl-terminal hydrolase 20-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E4F70)

HSP 1 Score: 54.7 bits (130), Expect = 1.820e-7
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKVK 129
            Y L++++VH G +  SGHYY +IR+A +AWYK DD  VS+V+
Sbjct:  296 YCLYAIVVHNGFSSCSGHYYCFIRSASDAWYKFDDSKVSRVR 337          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: A0A6U0XHQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XHQ1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.820e-7
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   10 LFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKV 126
            L+ V+VH+G+T+ SGHYYSY++  D  WY M+D +VS+V
Sbjct:  282 LYGVVVHQGMTVHSGHYYSYVKGTDGQWYLMNDSHVSRV 320          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: UPI0005238C8B (ubiquitin carboxyl-terminal hydrolase 17-like protein 6 n=1 Tax=Chaetura pelagica TaxID=8897 RepID=UPI0005238C8B)

HSP 1 Score: 54.3 bits (129), Expect = 2.410e-7
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVS 120
            Y L++V+VH+G T  SGHYY YI+  D+ WYKMDD +V+
Sbjct:  252 YKLYAVLVHRGHTCHSGHYYCYIKARDSLWYKMDDSSVT 290          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: UPI00106C56A1 (ubiquitin carboxyl-terminal hydrolase 36-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C56A1)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-7
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 PYVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKVKL 132
            PY L++V+VH G +  SGHYY +I+ A+N WY+M+D +V +V L
Sbjct:  370 PYKLYAVLVHCGYSCNSGHYYCFIKAANNHWYQMNDSSVRQVNL 413          
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Match: A0A2G3AFL7_CAPAN (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G3AFL7_CAPAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.410e-7
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    4 YVLFSVMVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKVK 129
            Y L++V+VH G +  SGHYYS+IR+A N WYK DD  V +V+
Sbjct:  381 YDLYAVIVHIGFSYSSGHYYSFIRSAPNEWYKFDDSKVVRVR 422          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65198.14370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010A370EF7.110e-856.10ubiquitin carboxyl-terminal hydrolase 23 n=1 Tax=P... [more]
A0A834X400_9FABA9.730e-856.10Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Senn... [more]
A9V415_MONBE1.330e-756.41Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A1D1W2X0_RAMVA1.330e-761.54Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Rama... [more]
A0A2R6PCW9_ACTCC1.330e-752.38Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Acti... [more]
UPI00125E4F701.820e-752.38ubiquitin carboxyl-terminal hydrolase 20-like n=2 ... [more]
A0A6U0XHQ1_9STRA1.820e-753.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI0005238C8B2.410e-756.41ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UPI00106C56A12.490e-750.00ubiquitin carboxyl-terminal hydrolase 36-like isof... [more]
A0A2G3AFL7_CAPAN3.410e-754.76Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Caps... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65198contigH-paniculata_contig65198:82..213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.840279-CDS-H-paniculata_contig65198:81..1921622930763.840279-CDS-H-paniculata_contig65198:81..192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65198 82..192 -
1691481441.5318506-CDS-H-paniculata_contig65198:81..1921691481441.5318506-CDS-H-paniculata_contig65198:81..192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65198 82..192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.8608441-UTR-H-paniculata_contig65198:192..2131622930763.8608441-UTR-H-paniculata_contig65198:192..213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65198 193..213 -
1691481441.542483-UTR-H-paniculata_contig65198:192..2131691481441.542483-UTR-H-paniculata_contig65198:192..213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65198 193..213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65198.14370.1prot_H-paniculata_contig65198.14370.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65198 82..192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65198.14370.1

>prot_H-paniculata_contig65198.14370.1 ID=prot_H-paniculata_contig65198.14370.1|Name=mRNA_H-paniculata_contig65198.14370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MVHKGLTIQSGHYYSYIRTADNAWYKMDDHNVSKVKL
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mRNA from alignment at H-paniculata_contig65198:82..213-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65198.14370.1 ID=mRNA_H-paniculata_contig65198.14370.1|Name=mRNA_H-paniculata_contig65198.14370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig65198:82..213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTATGTGCTGTTCAGTGTGATGGTCCATAAAGGTCTCACGATACAATC TGGACACTATTACAGTTATATCCGGACGGCTGATAATGCTTGGTACAAGA TGGACGACCATAACGTCTCGAAGGTAAAACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig65198:82..213-

>mRNA_H-paniculata_contig65198.14370.1 ID=mRNA_H-paniculata_contig65198.14370.1|Name=mRNA_H-paniculata_contig65198.14370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig65198:82..213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCATAAAGGTCTCACGATACAATCTGGACACTATTACAGTTATAT
CCGGACGGCTGATAATGCTTGGTACAAGATGGACGACCATAACGTCTCGA
AGGTAAAACTAATGGTCCATAAAGGTCTCACGATACAATCTGGACACTAT
TACAGTTATATCCGGACGGCTGATAATGCTTGGTACAAGATGGACGACCA
TAACGTCTCGAAGGTAAAACTA
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