mRNA_H-paniculata_contig6519.14369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6519.14369.1
Unique NamemRNA_H-paniculata_contig6519.14369.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: D7G7V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V7_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 3.190e-126
Identity = 189/284 (66.55%), Postives = 219/284 (77.11%), Query Frame = 3
Query:  150 SAASVKQISQFDALLAKPPSDEGRA---GANTGANPMRSACKKRQRQSPASEEGVMKVSQLKHPFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQATKRENKGRVGVVRSLEELAERGAVKTERRLNPRQRKAIKKK 992
            S+A+       +  +A  PSD+G+    G   GA     A KKR R+S A+           HPFPT+Y DHFETPLQAYRDIE ALA LAK L KKR+HLRIWDPYYCAGRTPRLL +LGFP+VEH N+DFYKVV + +QP HDVL+TNPPYSGDHKKRCLEYCRASGKPWFLL+PNYVATKDYY+L+VLG AAG GGEPFYVVP+ KY FDHPEGTGHADSPF  VW+ HCG H E +F+ T  + +G V V+RSL+EL++ GAV TERRLNPRQRKA+KKK
Sbjct:   50 SSATATTSGTGERTVAGDPSDQGKKRPRGDGAGAAAASLAGKKRPRESLAAPHH--------HPFPTEYGDHFETPLQAYRDIEVALALLAKLLDKKRKHLRIWDPYYCAGRTPRLLGQLGFPKVEHSNQDFYKVVREKRQPKHDVLITNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPENKYYFDHPEGTGHADSPFTGVWYVHCGSHTEAVFEGTITQKRGGVSVLRSLDELSQTGAVTTERRLNPRQRKALKKK 325          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A6U0XTY6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XTY6_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.820e-65
Identity = 112/224 (50.00%), Postives = 146/224 (65.18%), Query Frame = 3
Query:  327 HPFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYV--VPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQATKRENKGRVGVVRSLEELAERGAVKTERRLNPRQRKAIKKK 992
            HPF T+Y DHFETPL AY+ +   L  +AKRLGKK + LRI+DP+YCAG     +A LGFPR+ H NEDFY+   +G+ P  DVLVTNPPYS DHK+R L +C  SGKPW LL+PNYVATK YY  ++    +G    PF+V  +P ++Y + HPEGTGH +SPF ++WF       +E+          RV +  S+ +L +   V+  RRLNPRQRKA  K+
Sbjct:    9 HPFSTEYGDHFETPLIAYKHLRPVLCWIAKRLGKKPKELRIYDPFYCAGAVVGRMASLGFPRLIHRNEDFYRCESEGRVPAFDVLVTNPPYSLDHKERILNFCVTSGKPWALLMPNYVATKQYYT-NLTSGGSGAPPTPFFVAPLPGSRYQYTHPEGTGHDNSPFESMWFVDAMAGKKEVMGELSPAEGSRVML--SIADLKQARCVRPGRRLNPRQRKAAAKR 229          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A8J4APU4_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APU4_9CHLO)

HSP 1 Score: 220 bits (561), Expect = 1.970e-62
Identity = 106/238 (44.54%), Postives = 144/238 (60.50%), Query Frame = 3
Query:  330 PFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQATKRE-------------------NKGRVGVVRSLEELAERGAVKTERRLNPRQRKAIK 986
            PF  DY DHFE+PLQA +DIE  L  L+ +L K +  L ++DPY+C G   +   +LGF    H N DFYK V+ G  P +D+LVTNPPYS DHK+R LE+C  SGKPW LL+PNYVATK Y+   +   +      PF++ P  +Y ++HPEGTGHA+SPFF++W+   G + E I++A K                      + RV V R+++ L +  AV T RRLNP+QR  +K
Sbjct:  108 PFRVDYNDHFESPLQAVQDIEPVLQLLSIKLKKSKSSLTVYDPYFCQGGIRQHYEQLGFKNFIHRNRDFYKDVDSGNVPSYDILVTNPPYSSDHKERILEFCLRSGKPWALLLPNYVATKAYFSELLDSVSTPAAQRPFFLTPQARYSYEHPEGTGHAESPFFSIWYIGLGEYTETIYKACKARLEPQSNGSSIQSEAAAGLGGRWRVSVARTVDALKQAKAVPTARRLNPKQRARMK 345          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A7R9V2F9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V2F9_9CHLO)

HSP 1 Score: 212 bits (539), Expect = 9.360e-60
Identity = 102/226 (45.13%), Postives = 139/226 (61.50%), Query Frame = 3
Query:  330 PFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYK--LSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIF----QATKRENKGRVGVVRSLEELAERGAVKTERRLNPRQRKAIKK 989
            P+PTDY DHFET  +A  D+E AL  LA  LGK +  L ++DPYYC G   +   ++G  R+ H   DFY  V+ G  P +D+LVTNPPYSGDHK+R L++C  SGK W LL+PNYVATK Y+    S L        EPF++VP  KY + HPEGTGH+ SPFF++W+ H     + +     +   ++      ++RS+ EL E   V T +R NP+QRK ++K
Sbjct:   82 PYPTDYLDHFETSKEAIADLEPALYRLATHLGKPKSELVVYDPYYCKGTIRQHWEQIGVKRLIHEKRDFYADVKSGSVPEYDILVTNPPYSGDHKERILQFCMESGKAWALLMPNYVATKLYFTSIASTLLQQESFSAEPFFLVPTIKYDYVHPEGTGHSSSPFFSIWYIHMANDTKRVLAWWDKLLSKKGTSSARLLRSVSELQESQCVPTGKRPNPKQRKKMRK 307          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A2J8ADG8_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ADG8_9CHLO)

HSP 1 Score: 213 bits (541), Expect = 2.290e-59
Identity = 110/253 (43.48%), Postives = 147/253 (58.10%), Query Frame = 3
Query:  318 QLKHPFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIF---------------QATKRENKGRVG---------VVRSLEELAERGAVKTERRLNPRQRKAIKKKFKLG 1004
            +L  PF  DY DHFET  +A +DI   L  L+KRL K    L ++DP+YCAG      A LG  +  H N DFY  V+KG  P +D+LVTNPPYSGDHK+R LE+C  SGKPW LL+PNYVATK Y+      A+      PF++ P  +Y +DHPEGTGH +SPFF++W+   G H E ++                A +R+     G         + RS++ L +  AV T +RLNP+QRK +K+K + G
Sbjct:  115 ELSWPFAADYNDHFETDFRAVQDILPVLQQLSKRLCKPLSELAVYDPFYCAGGVRAHYAALGITKFIHRNRDFYDDVKKGALPSYDILVTNPPYSGDHKERILEFCLRSGKPWCLLMPNYVATKAYFGQLQDAASTPPLQRPFFLTPHARYSYDHPEGTGHTESPFFSIWYVCLGAHTEGVYGSCRSRLDAAPAAGGAADQRQGGAPAGXXXAAWGVALARSVDALRQAKAVPTGKRLNPQQRKRLKQKMQPG 367          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A835Y0N0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0N0_9CHLO)

HSP 1 Score: 217 bits (552), Expect = 3.340e-59
Identity = 110/256 (42.97%), Postives = 141/256 (55.08%), Query Frame = 3
Query:  330 PFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQATKRENKGR----------------------------------VGVVRSLEELAERGAVKTERRLNPRQRKAIKKKF 995
            PF  DY DHFETP+QA RD++  L AL  RLGK    L ++DP++C G   R    LG+    H   DFY  VE G  P +DVLVTNPPYS DHK+R LE+C  SGKPW LL+PNYVATK Y+   +   +      PF++ P T+Y ++HPEGTGHA+SPFF++W+   G H E +FQA +                                        V + R +E L   GAV T RR NPRQR+ IK++ 
Sbjct:  266 PFEVDYNDHFETPIQAVRDLQPVLTALCGRLGKSPAQLAVYDPFFCQGGIRRHFEALGYTNFIHRKRDFYADVEAGNLPKYDVLVTNPPYSEDHKERILEFCLRSGKPWALLMPNYVATKAYFAELLDATSTPAPQRPFFLTPHTRYEYEHPEGTGHAESPFFSIWYVGLGPHTEPVFQACRARTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWGVDLARGVEHLKAAGAVPTARRPNPRQRRKIKEQM 521          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A835SNK2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SNK2_CHLIN)

HSP 1 Score: 213 bits (543), Expect = 3.620e-59
Identity = 111/253 (43.87%), Postives = 145/253 (57.31%), Query Frame = 3
Query:  309 KVSQLKHPFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQA--TKRENKG----------------------RVGVVRSLEELAERGAVKTERRLNPRQRKAIKKKF 995
            +VS  + PF  DY DHFET   A  DI+  L AL KRL K    L ++DP++C G   R     GF    H   DFY  VE G+ P +D++VTNPPYS DHK+R L++C  SGKPW LL+PNYVATK YY   V  A       PFY+ P T+Y ++HPEGTGHA+SPF+++W+   G H E ++ A  TK ++ G                       V + RS++ L E  AV T +RLNP+QR  +KKK 
Sbjct:  154 RVSSDEWPFEVDYNDHFETSAAAVDDIQPVLLALCKRLKKTPAQLAVYDPFFCQGGIRRHYTARGFTNFIHRKRDFYADVESGQLPEYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYSELVDEAGTPPQQRPFYLTPVTRYAYEHPEGTGHAESPFYSIWYVGLGAHTEAVYGACRTKLDSPGPAAAXXXXXXXXXXXXXXXXSWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKKM 406          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A835SR82_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SR82_9CHLO)

HSP 1 Score: 207 bits (527), Expect = 1.310e-57
Identity = 108/254 (42.52%), Postives = 141/254 (55.51%), Query Frame = 3
Query:  309 KVSQLKHPFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQATKRE----NKGR---------------------VGVVRSLEELAERGAVKTERRLNPRQRKAIKKKF 995
            +VS    PF  DY DHFET   A  DI+  L AL KRL K    L I+DP++C G   R     GF    H   DFY  V  G+ P +D++VTNPPYS DHK+R L++C  SGKPW LL+PNYVATK YY   +  A       PFY+ P T+Y ++HPEGTGHA+SPF+++W+   G+H E ++ A +        G                      V + RS++ L E  AV T +RLNP+QR  +KKK 
Sbjct:   89 RVSSDDWPFEVDYNDHFETSSAAVDDIQPVLTALCKRLKKTPAQLAIYDPFFCKGGIRRHYEARGFTNFIHRKRDFYADVANGQLPAYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYAELIEAAGTPPQQRPFYLTPITRYAYEHPEGTGHAESPFYSIWYVGLGQHTEAVYGACRTRLDLSTSGAAAAASXXXXXXXXXXXXXGWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKKM 342          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A0A7S1IGA0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IGA0_9EUGL)

HSP 1 Score: 204 bits (518), Expect = 1.050e-56
Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 3
Query:  312 VSQLKHPFP-TDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQATKRE--NKGRVGVVRSLEELAERGAVKTERRLNPRQRKAI 983
            V+ L++P+   +Y DHFET  QAY+DI   L   A+ + +    L I+DP+YC G   R LA LGF  V H   DFY  V+ G+ P HD+L+TNPPYSGDHK+R LEYC ASGKPW LL+PNY+ATK+YY+ ++    A    EPFY V   +Y F HPEGTGH  SPF   WF + G H E ++Q + +         + R++++L ++  V   R +NP++RKA+
Sbjct:   85 VTSLEYPWEDVEYGDHFETCDQAYKDITPLLKEAARLMQRDASSLGIYDPFYCDGAVKRHLAALGFHTVHHEKRDFYADVKNGQVPEHDILITNPPYSGDHKERILEYCCASGKPWALLLPNYIATKNYYQSTL----AKHKQEPFYFVSRERYMFYHPEGTGHDTSPFEGFWFLYLGPHTEHLYQWSVQNLPRSSYKALTRTVDDLLQKRLVPAPR-MNPKRRKAL 306          
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Match: A8JDY5_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JDY5_CHLRE)

HSP 1 Score: 206 bits (524), Expect = 1.990e-56
Identity = 112/266 (42.11%), Postives = 143/266 (53.76%), Query Frame = 3
Query:  309 KVSQLKHPFPTDYCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLARLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGTGHADSPFFAVWFAHCGRHNEEIFQA--TKRENKGR-----------------------------------VGVVRSLEELAERGAVKTERRLNPRQRKAIKKKF 995
            +VS    PF  DY DHFET   A  DI+  L AL  RL K    L I+DP++C G   R     GF    H   DFY  VE G+ P +DV+VTNPPYS DHK+R L++C  SGKPW LL+PNYVATK YY   V  A       PFY+ P T+Y ++HPEGTGHA+SPF+++W+   G H E ++ A  TK ++ G                                    V + RS++ L E  AV T +RLNP+QR  +KKK 
Sbjct:  142 RVSSDDWPFEVDYNDHFETSSAAVDDIQPVLLALCNRLKKTPAQLAIYDPFFCKGGIRRHYEARGFTNFIHRKRDFYADVESGQLPEYDVMVTNPPYSADHKERALDFCLRSGKPWALLLPNYVATKAYYSELVDAAGTPPQQRPFYLTPITRYAYEHPEGTGHAESPFYSIWYVGLGVHTEAVYGACRTKLDSAGAAAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKKM 407          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6519.14369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V7_ECTSI3.190e-12666.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U0XTY6_9STRA7.820e-6550.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J4APU4_9CHLO1.970e-6244.54Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A7R9V2F9_9CHLO9.360e-6045.13Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A2J8ADG8_9CHLO2.290e-5943.48Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A835Y0N0_9CHLO3.340e-5942.97Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A835SNK2_CHLIN3.620e-5943.87Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A835SR82_9CHLO1.310e-5742.52Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A7S1IGA0_9EUGL1.050e-5645.81Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A8JDY5_CHLRE1.990e-5642.11Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6519contigH-paniculata_contig6519:9399..12439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.0
Seed ortholog evalue2.2e-105
Seed eggNOG ortholog2880.D7G7V7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BVHF@1,2S29B@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-06_000150.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1947
Cds size1005
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6519.14369.1prot_H-paniculata_contig6519.14369.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6519 10297..12395 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.7273736-UTR-H-paniculata_contig6519:9398..102961622930763.7273736-UTR-H-paniculata_contig6519:9398..10296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6519 9399..10296 -
1691481441.488574-UTR-H-paniculata_contig6519:9398..102961691481441.488574-UTR-H-paniculata_contig6519:9398..10296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6519 9399..10296 -
1622930763.7867844-UTR-H-paniculata_contig6519:12395..124391622930763.7867844-UTR-H-paniculata_contig6519:12395..12439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6519 12396..12439 -
1691481441.521239-UTR-H-paniculata_contig6519:12395..124391691481441.521239-UTR-H-paniculata_contig6519:12395..12439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6519 12396..12439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.7460024-CDS-H-paniculata_contig6519:10296..108841622930763.7460024-CDS-H-paniculata_contig6519:10296..10884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6519 10297..10884 -
1691481441.501761-CDS-H-paniculata_contig6519:10296..108841691481441.501761-CDS-H-paniculata_contig6519:10296..10884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6519 10297..10884 -
1622930763.7703166-CDS-H-paniculata_contig6519:11978..123951622930763.7703166-CDS-H-paniculata_contig6519:11978..12395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6519 11979..12395 -
1691481441.5113418-CDS-H-paniculata_contig6519:11978..123951691481441.5113418-CDS-H-paniculata_contig6519:11978..12395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6519 11979..12395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6519.14369.1

>prot_H-paniculata_contig6519.14369.1 ID=prot_H-paniculata_contig6519.14369.1|Name=mRNA_H-paniculata_contig6519.14369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp
MEEDGGTLRTEARAKKRRKINNKKKKRRNQTTQTPSAASVKQISQFDALL
AKPPSDEGRAGANTGANPMRSACKKRQRQSPASEEGVMKVSQLKHPFPTD
YCDHFETPLQAYRDIEEALAALAKRLGKKRQHLRIWDPYYCAGRTPRLLA
RLGFPRVEHHNEDFYKVVEKGKQPPHDVLVTNPPYSGDHKKRCLEYCRAS
GKPWFLLIPNYVATKDYYKLSVLGAAAGLGGEPFYVVPDTKYPFDHPEGT
GHADSPFFAVWFAHCGRHNEEIFQATKRENKGRVGVVRSLEELAERGAVK
TERRLNPRQRKAIKKKFKLGGAGASGGTGRAKSG*
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mRNA from alignment at H-paniculata_contig6519:9399..12439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6519.14369.1 ID=mRNA_H-paniculata_contig6519.14369.1|Name=mRNA_H-paniculata_contig6519.14369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3041bp|location=Sequence derived from alignment at H-paniculata_contig6519:9399..12439- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGATGTTCTGATAAAGGGTATCATGTCGAGTTGAGGAGGGATGGAG GAGGATGGCGGTACGTTGAGGACTGAGGCACGGGCGAAGAAGCGAAGAAA AATCAACAACAAGAAGAAGAAAAGACGAAACCAAACCACGCAAACACCAT CTGCTGCCTCTGTCAAGCAGATATCGCAGTTCGATGCCCTCCTAGCGAAG CCTCCATCTGATGAAGGGAGGGCTGGCGCCAACACCGGAGCAAATCCAAT GCGATCCGCTTGTAAAAAGAGGCAGAGGCAGAGCCCCGCAAGCGAGGAAG GTGTGATGAAAGTATCGCAGCTAAAGCATCCTTTTCCCACAGACTACTGC GATCACTTCGAAACACCACTACAAGCGTACCGAGACATCGAAGAGGCGTT GGCAGCCTTAGCGAAACGTTTGGGTAAGAAGCGACAGCACCTACGGATCT GGGATCCCTATGTAAGTGCCGATATCCATTGTATATGGCTTCCAGTATGT ACATGCCACGAGGCCGTACCGTCTGTAGGTTGCACGTGCACGCTGTGGAG GCGGGCAAACACGAATACGCCTGTACCTCTCGTTCTTTAGTATGCCATCT ACGTATTATGCATGATCTTGTAGATGCCATGTCGTACCTTTCGGCTCCAG TCAATTCAGAATCCCGCCCAATCCCCACCTGGAAAAGAGGGAACACAACG CCGATGTTTGACCATTGACATGACAACCGGGATGGGGAGCTGCCGCTGTT CAGACAATCAGTCCACCACAGATGGTTCATGAGCACTCCTGGCGAGTTGA CATAGTTCTGCCCACAATGACTGCAGCGCCCAACATACATTGTGTGATTA ATTTTTCGTTCCGAAACAGCTTCGGACACAATGATTATTAATTCTTGGAA AAATAAAACATTGGTGTTCGCTAGCAGTTCCCAGGTGCCTGAACGTGTCC ACAGTAAAATGCACCGGGGCTATCTGCCCGGATGGCGTCAATATGCTTTA CTGAGGTAACCAGATAAGACAGCACCCGATATCTGAAAAAATCGTATACC CAGGAGTGTTGGACATTCGCTGCGCGAAATACATACGATTTTCGACACAG ACTACAGTTGCTGAATCTCTCACGAATCCAGCGAGGACGTCATGATTTCA AACTCCTGTTCAAACGACCATTTTAACTCGTAGGTAAAATGTTTATGGGC ACTTCCCCTTTGGTCATGGATTTTTCATCCTCCAAACACAATTCCCTACG GACTAAAAACTGGCAATGCCGTGACAGTATCGTATACCACCGCGTGCGAT TTCAGGCCGGAGTGATCGCGACGTGGGGCGTAGCAATGTAGGCTATATAG GCGACTCCTGGCGTGTCACTACGGACACCATGCTCCGTAGTGCTGATACG GTGCGCCCGGATCAAGGAGTCCAACGCAAAATAGGACGACCTAAAGGGTC ACCCTGCTCCTTAGAAAAATCCTCCATTTCCCATAAACATTTGACCTGAA CTTCGTCTTCCCCCGAAAACATGTTGCCTTATATCTCGAATGTACAACAA CACAGTACTGCGCAGGCCGCACTCCGCGCCTTCTTGCCAGGCTGGGCTTC CCTCGCGTGGAGCACCACAACGAGGACTTCTACAAGGTCGTGGAGAAGGG GAAGCAGCCCCCACATGATGTCCTCGTCACCAACCCCCCTTACAGCGGCG ACCATAAGAAGCGTTGCCTGGAGTACTGCAGAGCCTCCGGTAAACCGTGG TTCCTCCTAATTCCAAACTATGTCGCCACAAAGGACTACTACAAGCTAAG CGTCTTGGGTGCGGCGGCGGGTCTCGGAGGCGAGCCGTTTTACGTCGTGC CTGACACCAAGTACCCCTTTGACCACCCCGAGGGAACAGGACACGCGGAC TCTCCATTTTTTGCCGTGTGGTTTGCGCACTGCGGGCGTCACAACGAAGA AATTTTTCAGGCGACAAAGAGAGAGAACAAGGGCCGGGTAGGTGTCGTGC GGTCGTTGGAGGAGCTCGCAGAACGGGGTGCGGTGAAGACAGAGCGGCGA CTCAATCCACGACAGCGCAAAGCCATAAAGAAGAAGTTCAAGCTGGGTGG AGCTGGAGCATCGGGAGGGACGGGGAGAGCGAAGTCGGGCTAGTTTGCAT GATGGGAGACTCGAGATCAAGAGTTAGCAATACTGACGGTATTGGGTTTG TGCGTGGTGTAGTACGGGCTCCAACAATCGCTGCTTACAAACACCGAAGG CTGGCATTGCTGTGTATCTCGAAAGCACAATTGATACGCTGTGCAGGTGA TGCTGACAGGATGAAACGCTCTGCTCAGCTGTAAGCTGCATGTTGTGATG TCGGCCATACTCACCTGTCGCTGTGTGAGTAGGTACCCAAATTATGGCAT GGTTCTGTACTAAGCGATTTCGAGGTTTACGGTGGTCGAGAACAGAGTCG CGTGGATAGCAAACGGCGCCAAATAGATAAGCTCGTGAGAGATACCATAT CAGCTGCCATTCATCAGGGTGCAGTTGTCCTGCTCTTGTGAAAAAATCGT TTTTTTTCAAGATAGTTTGTTGATTTCACCGTAAATTTAGCTACTCTGCG AGACATTGCGCTGCGCCGCGTGTGGCCTTGTATTCTCAACAAATCCAGGC CCCTCCGGTACCACCTCAACGCCCTCCAAGAGTGATATAGGCATTTCACG AGAAGCTGTGAACACTAACTACTCGTTGGTGCTATCTCCTGCTCGTATCA CCGGAGGTAGATGCTCGGCTGTTGCAACCATCTCACAGCTTTCGCTTTTG CCATGAACAGGCCAGCTATGGGCCCCTTTCAGCGATCTTCCATTGTACTT TTTTCGTGAACTCTGGACAATTCCACCACCGCTGCTGAGGTATCGGTCGC CGTGTAGACCGCTCCCAACAATCGGAGAGGTGTGTAGCCTTGAATGTTTA TCTGCTTTCGGTGCCTCTGCCGTAGCCTCTCTCCATGCGCACCTAAGCTC GCTATCCTCTGAGCTAGATTTGTCGGGTGGGTCGCCTAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6519:9399..12439-

>mRNA_H-paniculata_contig6519.14369.1 ID=mRNA_H-paniculata_contig6519.14369.1|Name=mRNA_H-paniculata_contig6519.14369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig6519:9399..12439- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGGATGGCGGTACGTTGAGGACTGAGGCACGGGCGAAGAAGCG
AAGAAAAATCAACAACAAGAAGAAGAAAAGACGAAACCAAACCACGCAAA
CACCATCTGCTGCCTCTGTCAAGCAGATATCGCAGTTCGATGCCCTCCTA
GCGAAGCCTCCATCTGATGAAGGGAGGGCTGGCGCCAACACCGGAGCAAA
TCCAATGCGATCCGCTTGTAAAAAGAGGCAGAGGCAGAGCCCCGCAAGCG
AGGAAGGTGTGATGAAAGTATCGCAGCTAAAGCATCCTTTTCCCACAGAC
TACTGCGATCACTTCGAAACACCACTACAAGCGTACCGAGACATCGAAGA
GGCGTTGGCAGCCTTAGCGAAACGTTTGGGTAAGAAGCGACAGCACCTAC
GGATCTGGGATCCCTATATGGAGGAGGATGGCGGTACGTTGAGGACTGAG
GCACGGGCGAAGAAGCGAAGAAAAATCAACAACAAGAAGAAGAAAAGACG
AAACCAAACCACGCAAACACCATCTGCTGCCTCTGTCAAGCAGATATCGC
AGTTCGATGCCCTCCTAGCGAAGCCTCCATCTGATGAAGGGAGGGCTGGC
GCCAACACCGGAGCAAATCCAATGCGATCCGCTTGTAAAAAGAGGCAGAG
GCAGAGCCCCGCAAGCGAGGAAGGTGTGATGAAAGTATCGCAGCTAAAGC
ATCCTTTTCCCACAGACTACTGCGATCACTTCGAAACACCACTACAAGCG
TACCGAGACATCGAAGAGGCGTTGGCAGCCTTAGCGAAACGTTTGGGTAA
GAAGCGACAGCACCTACGGATCTGGGATCCCTATTACTGCGCAGGCCGCA
CTCCGCGCCTTCTTGCCAGGCTGGGCTTCCCTCGCGTGGAGCACCACAAC
GAGGACTTCTACAAGGTCGTGGAGAAGGGGAAGCAGCCCCCACATGATGT
CCTCGTCACCAACCCCCCTTACAGCGGCGACCATAAGAAGCGTTGCCTGG
AGTACTGCAGAGCCTCCGGTAAACCGTGGTTCCTCCTAATTCCAAACTAT
GTCGCCACAAAGGACTACTACAAGCTAAGCGTCTTGGGTGCGGCGGCGGG
TCTCGGAGGCGAGCCGTTTTACGTCGTGCCTGACACCAAGTACCCCTTTG
ACCACCCCGAGGGAACAGGACACGCGGACTCTCCATTTTTTGCCGTGTGG
TTTGCGCACTGCGGGCGTCACAACGAAGAAATTTTTCAGGCGACAAAGAG
AGAGAACAAGGGCCGGGTAGGTGTCGTGCGGTCGTTGGAGGAGCTCGCAG
AACGGGGTGCGGTGAAGACAGAGCGGCGACTCAATCCACGACAGCGCAAA
GCCATAAAGAAGAAGTTCAAGCTGGGTGGAGCTGGAGCATCGGGAGGGAC
GGGGAGAGCGAAGTCGGGCTAGTACTGCGCAGGCCGCACTCCGCGCCTTC
TTGCCAGGCTGGGCTTCCCTCGCGTGGAGCACCACAACGAGGACTTCTAC
AAGGTCGTGGAGAAGGGGAAGCAGCCCCCACATGATGTCCTCGTCACCAA
CCCCCCTTACAGCGGCGACCATAAGAAGCGTTGCCTGGAGTACTGCAGAG
CCTCCGGTAAACCGTGGTTCCTCCTAATTCCAAACTATGTCGCCACAAAG
GACTACTACAAGCTAAGCGTCTTGGGTGCGGCGGCGGGTCTCGGAGGCGA
GCCGTTTTACGTCGTGCCTGACACCAAGTACCCCTTTGACCACCCCGAGG
GAACAGGACACGCGGACTCTCCATTTTTTGCCGTGTGGTTTGCGCACTGC
GGGCGTCACAACGAAGAAATTTTTCAGGCGACAAAGAGAGAGAACAAGGG
CCGGGTAGGTGTCGTGCGGTCGTTGGAGGAGCTCGCAGAACGGGGTGCGG
TGAAGACAGAGCGGCGACTCAATCCACGACAGCGCAAAGCCATAAAGAAG
AAGTTCAAGCTGGGTGGAGCTGGAGCATCGGGAGGGACGGGGAGAGCGAA
GTCGGGCTAG
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