prot_H-paniculata_contig6479.14304.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6479.14304.1
Unique Nameprot_H-paniculata_contig6479.14304.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length83
Homology
BLAST of mRNA_H-paniculata_contig6479.14304.1 vs. uniprot
Match: A0A6G6FQK1_9APHY (RING-type domain-containing protein n=1 Tax=Trametes gibbosa TaxID=160864 RepID=A0A6G6FQK1_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 2.790e-5
Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 0
Query:   26 PVFAAIEDILRCAICRQVSVPPLSLPCCHKLFCSFCIRGYLENANPRCPSC 76
            P   A++D LRC ICR     P+SLPC H  FCS CIR  L   +  CP+C
Sbjct:   33 PGLRALDDALRCDICRDFYDAPVSLPCAHS-FCSLCIRSALP-ISATCPTC 81          
BLAST of mRNA_H-paniculata_contig6479.14304.1 vs. uniprot
Match: A0A0D7B749_9AGAR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B749_9AGAR)

HSP 1 Score: 49.7 bits (117), Expect = 5.060e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 0
Query:   19 YSNSKPGPVFAAIEDILRCAICRQVSVPPLSLPCCHKLFCSFCIRGYLENANPRCPSCR 77
            +  S   P   A+++ LRC IC+++   P+SL C H  FCS CIR  L +A   CP+CR
Sbjct:   14 FPESSTAPGLRALDNALRCTICKELFSGPVSLRCGHS-FCSQCIRQAL-SAKQECPTCR 70          
BLAST of mRNA_H-paniculata_contig6479.14304.1 vs. uniprot
Match: A0A428U0Z7_9HYPO (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=6 Tax=Fusarium solani species complex TaxID=232080 RepID=A0A428U0Z7_9HYPO)

HSP 1 Score: 49.3 bits (116), Expect = 7.280e-5
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 0
Query:   22 SKPGPVFAAIEDILRCAICRQVSVPPLSLPCCHKLFCSFCIRGYLENANPRCPSCRCP 79
            S P    AA+E+ LRC +C+     P+   C H  FCS CIR  L N + +CP CR P
Sbjct:   14 STPLAGLAAVENALRCQVCKDFFKTPMITSCSHT-FCSLCIRRALSN-DSKCPLCRSP 69          
BLAST of mRNA_H-paniculata_contig6479.14304.1 vs. uniprot
Match: A0A428PRC5_9HYPO (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Fusarium sp. AF-8 TaxID=1325734 RepID=A0A428PRC5_9HYPO)

HSP 1 Score: 48.9 bits (115), Expect = 9.940e-5
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 0
Query:   22 SKPGPVFAAIEDILRCAICRQVSVPPLSLPCCHKLFCSFCIRGYLENANPRCPSCRCP 79
            S P    AA+E+ LRC +C+     P+   C H  FCS CIR  L N + +CP CR P
Sbjct:   14 STPLAGLAAVENALRCQVCKDFFKTPMITSCSHT-FCSLCIRRALSN-DGKCPLCRSP 69          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6479.14304.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6G6FQK1_9APHY2.790e-549.02RING-type domain-containing protein n=1 Tax=Tramet... [more]
A0A0D7B749_9AGAR5.060e-542.37Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A428U0Z7_9HYPO7.280e-543.10Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A428PRC5_9HYPO9.940e-543.10Postreplication repair E3 ubiquitin-protein ligase... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 37..76
e-value: 1.1E-4
score: 31.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 37..77
score: 11.589
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 11..82
e-value: 7.3E-12
score: 47.3
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 37..76
e-value: 1.5E-7
score: 31.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 36..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6479contigH-paniculata_contig6479:2437..4962 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6479.14304.1mRNA_H-paniculata_contig6479.14304.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6479 2298..5323 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6479.14304.1 ID=prot_H-paniculata_contig6479.14304.1|Name=mRNA_H-paniculata_contig6479.14304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MIAYGGDDMDMEEDDVYQYSNSKPGPVFAAIEDILRCAICRQVSVPPLSL
PCCHKLFCSFCIRGYLENANPRCPSCRCPGAR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type