mRNA_H-paniculata_contig6479.14304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6479.14304.1
Unique NamemRNA_H-paniculata_contig6479.14304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6479.14304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6479contigH-paniculata_contig6479:2298..5323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size749
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6479.14304.1prot_H-paniculata_contig6479.14304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6479 2437..4962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930755.144861-UTR-H-paniculata_contig6479:2297..24361622930755.144861-UTR-H-paniculata_contig6479:2297..2436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6479 2298..2436 -
1691481437.7947123-UTR-H-paniculata_contig6479:2297..24361691481437.7947123-UTR-H-paniculata_contig6479:2297..2436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6479 2298..2436 -
1622930755.1997168-UTR-H-paniculata_contig6479:4962..53231622930755.1997168-UTR-H-paniculata_contig6479:4962..5323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6479 4963..5323 -
1691481437.8265998-UTR-H-paniculata_contig6479:4962..53231691481437.8265998-UTR-H-paniculata_contig6479:4962..5323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6479 4963..5323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930755.1580527-CDS-H-paniculata_contig6479:2436..25751622930755.1580527-CDS-H-paniculata_contig6479:2436..2575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6479 2437..2575 -
1691481437.8101163-CDS-H-paniculata_contig6479:2436..25751691481437.8101163-CDS-H-paniculata_contig6479:2436..2575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6479 2437..2575 -
1622930755.1731308-CDS-H-paniculata_contig6479:4852..49621622930755.1731308-CDS-H-paniculata_contig6479:4852..4962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6479 4853..4962 -
1691481437.8181007-CDS-H-paniculata_contig6479:4852..49621691481437.8181007-CDS-H-paniculata_contig6479:4852..4962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6479 4853..4962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6479.14304.1

>prot_H-paniculata_contig6479.14304.1 ID=prot_H-paniculata_contig6479.14304.1|Name=mRNA_H-paniculata_contig6479.14304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MIAYGGDDMDMEEDDVYQYSNSKPGPVFAAIEDILRCAICRQVSVPPLSL
PCCHKLFCSFCIRGYLENANPRCPSCRCPGAR*
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mRNA from alignment at H-paniculata_contig6479:2298..5323-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6479.14304.1 ID=mRNA_H-paniculata_contig6479.14304.1|Name=mRNA_H-paniculata_contig6479.14304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3026bp|location=Sequence derived from alignment at H-paniculata_contig6479:2298..5323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAAGGCATTCTACAAAGTAGTACAGGCGAGGGTGAAACAAGTAGTTCA
TCAAAATTTCAGGCAAAATTTACCAGGCAGTTGACTCTTCGGGCGGTACC
GTGCAAATTTGAATTGCACCAATTTTGCGCGCCCTAAGCTGCACACAGAA
GGTCTGCCGTATACACCAGGCGCCTTTAGTGTGGTGGAGGGTGGAATCCC
GGGCTTGACAGAGGCCAAGGCTTTGCCCCCTCTCTTGCATCTTCATACCA
ACACTGCGGCAGCAGGGGGAGACAACGGCAGGCAGGTGTGGGTAACGCAA
TCACGACAGAGCTACAGCTAGACCGGTTTGTCATACTCACCACTGGGTCG
GTCTGCGTGTCATGATTGCTTACGGGGGCGATGATATGGACATGGAAGAG
GATGATGTGTACCAGTACAGCAATAGCAAGCCAGGCCCGGTGTTCGCGGC
TATCGAAGACATCTTGAGATGGTGAGAGGCTGGGACTGTAGTCTGCTACT
GGGTGCAGTCAGGGAGAATTATCTAGTAATGACATCTCGTGTATCCGTAT
CCGTCTTGTGATTCTGGGTGCTCTAATGGAGACTATCTACTAGTACTTAA
AATTCAGCAGTACTGTGGTTGATCCGGTACGTCTACAATACTGCTTTGGG
ATGGGCATGTGGGCAATTGCTCCGTTCGTTGGTGGCTGGCATCATTATGC
CTGTTGCTGTGACTACGCAGAGGGTACTGTATATTGTACTGTCCGCAGTA
CAGTAGAAACAGTAATCGGATACACTAAGTATTGAGCGGAGGTAGGGCAC
CAGTGGAGAACAAACAGAGCAACTGCACAGCTGTGCACGCATGTAATGTA
CTGTTCTGTACTGTTGTGCTGAGCGGGCAGTCAGGTCGACCTCGCACTAA
CAGCTTAGTTGTTGTCAGGACAGCAATATCGTGATGATCACGCCGGCTTC
GCAGATGTAATCCCATCTTCGTTGACACCTGGATATCATCACAAAAGCAT
AGTCCTGACGGTGTCAGTATATGCCACTGTTGGCTCTAGAGAGGTCTTTA
TCATGAACATAGATGTGTTCTCTCGGTCCACGAACACTTACCATATAGTA
GCATCGTGTATACTGCCTCCGTTCCCCCATGCAGCAGACCTTCCATTTCT
CGTTTCACGTCACCAACAGAGGGCGGGGGAATGCATTCCAAACACACTGC
CTAGTGCTGTGTTGAGAGTACGCATAACATGTTACCGGCTGCTACCTATG
CGGAGCAGGGATGGTGAATATGGTGCATTTGTCAGTTGACCTCCTTCCGA
CATGGAGCAATGGACAATCAACAAACAGCCCATCCTCTTAACGCATTCGT
CTATTCCAGTAAGGCGTTCGGCGAACATACTTGAATGAGATACTACAAGT
AGTTGGTAAGACTCTACTTAGCCCGGTTTTGTCAAAGCGTTGTCCGTGAT
TGTGCAGTATTCGTTTTTCCCTAGCGTACTGTACTGCCCGAATCTGCCAA
ATCGAGGCCTTTACCTGCGGCGATGTCAGACGTTGCCGTGGCTCGATCCA
TGTACTCTAGACCTAAAACCTGTTAGCTACGACGTAAGGAGTGGGATTCG
CATCGACGTTAGTGTGGGTTCTGGCGTTGGTAATCCTCACCCACGGGCAG
AACAGAGCGTGGACCATAAGGTGAATGAAGAATAAGCATTGAGGCCTCAT
ATGCAACAATGGATATTCAAAAGACAGACAGTAGTACCTTAACCCTATCC
CATACACCACCTCTTCAATCGGGGACCGCAGGCGTCTACAATAGCTCAAC
AAGATGGTGCGGCTCCATAGCATGGCAATGACCCTGGACCCAGGTTCACG
GAGTGGTTGGACAGTATTACAGATGAAGTACACCAGCATAACCCTGTTCG
TGCCCGTGCTTCCAGTATGCAGAGATTCTCGGGCCCGATTGCATCTCAAC
CCTGAGTCTATCGTTGATTCTCATCCAGTTTCTATCGAACTCCTATCCCC
CAAAAAGCGTCCACATAAAGCACAACACCGGTGTTATAGTCACGGGCACA
GGTAGTATACCGTCATGGTCTGTTCAGTCCAACAGTACCACTCTCGGCGA
CTTTCTTCCTCAGTTGGCCCGAAGTTTTTTTGGTTTTTTTTAACCCCCGG
AAGGCTAAGGCAAAAACCTTTACTGAGGTAAAAATAAAAAAATAAAAATA
AAAGACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTA
CCCGTTCGGGCGTAGGTCCGTGGTGGTCCGAAGTATTGTATCCAGTATAT
GCTAATATCCCCATCACACGCACGGAAGTGATCGTCACCTCCCTTGGACA
CCTATCGTTGGATTATAGTCCTAGTACCCGCTTGTCCTTCTTGGACCCAA
TTCACTGAACGGCCTTGCCGGAACCAGCCGCCACTGTACAATCAGTCCTG
TACAGACAGTTATACTTCGCTTTCTGTCTGTATAGACAAATGCTAGGCAA
TAGGCAGCTTCCGTCCACAATGAACTCGATGTCTTTTTATGTTCCGAAAT
GTCCTATCCCGGCGCTTTAAGTGTCAACACGTTTTACTGTATTATTACTT
TCCAGCTTTTTCAACAAAATAATGACATAACTGGGAACTTCATCCATTTC
CTTCCCTCGTCCGTTTTCTCCCTACCCTGCCCTCCTTCCTTCCCTTTGGT
TCCTTCTTGTGAAAAACGCCATCTTCGTTATAATTTGCGGCTTGGCAGCG
CCATTTGTCGACAGGTGTCTGTTCCCCCTCTATCTCTTCCGTGTTGCCAT
AAGCTCTTTTGCTCCTTTTGTATACGAGGGTACCTGGAAAACGCGAACCC
TCGATGTCCCAGCTGTAGGTGTCCAGGTGCGCGTTGAGAGTAAATGTTGG
AAGAGGGGAAGCAAAAAAACATAGGCGTGAGTGCGATTTTTTTAGCGTAC
TTGTATTTTGTGAACCTGTAGTATATTTATATATATGTATACATAGTTTC
ACATCATTAGCTATTGAAAAAAGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6479:2298..5323-

>mRNA_H-paniculata_contig6479.14304.1 ID=mRNA_H-paniculata_contig6479.14304.1|Name=mRNA_H-paniculata_contig6479.14304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig6479:2298..5323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGCTTACGGGGGCGATGATATGGACATGGAAGAGGATGATGTGTA
CCAGTACAGCAATAGCAAGCCAGGCCCGGTGTTCGCGGCTATCGAAGACA
TCTTGAGATGATGATTGCTTACGGGGGCGATGATATGGACATGGAAGAGG
ATGATGTGTACCAGTACAGCAATAGCAAGCCAGGCCCGGTGTTCGCGGCT
ATCGAAGACATCTTGAGATGCGCCATTTGTCGACAGGTGTCTGTTCCCCC
TCTATCTCTTCCGTGTTGCCATAAGCTCTTTTGCTCCTTTTGTATACGAG
GGTACCTGGAAAACGCGAACCCTCGATGTCCCAGCTGTAGGTGTCCAGGT
GCGCGTTGACGCCATTTGTCGACAGGTGTCTGTTCCCCCTCTATCTCTTC
CGTGTTGCCATAAGCTCTTTTGCTCCTTTTGTATACGAGGGTACCTGGAA
AACGCGAACCCTCGATGTCCCAGCTGTAGGTGTCCAGGTGCGCGTTGA
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