prot_H-paniculata_contig64766.14301.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig64766.14301.1
Unique Nameprot_H-paniculata_contig64766.14301.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length124
Homology
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 122 bits (306), Expect = 3.840e-32
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 0
Query:    3 IKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 124
            ++ + + AY PQQNGV ER   ++ E+AR+ +I  ++ +++WAEAV++ VY LNR PT+     T  E W G+KP +DH R+FGC  YV +  Q+R KL +K   G+FLGY   S  Y  +N
Sbjct:   78 LEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFN 199          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 127 bits (320), Expect = 9.990e-32
Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 0
Query:    3 IKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 124
            I+ +F+ +Y PQQNGV+ER   ++ E++R  +    + +++WAEAV + VY LNR  TR  NG T YE W+G KP +DHLR+FGC  Y  +   +R KL  KA  G+FLGY  +   YR+YN
Sbjct:  430 IEHQFTVSYTPQQNGVSERKNRTVMEMSRCLLFEKKLPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYN 551          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A8J5FC91_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FC91_ZINOF)

HSP 1 Score: 125 bits (315), Expect = 3.650e-31
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 0
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 122
            N IK++ + +Y PQQNGVAER   +I E+AR+ +    +   YWAEAVH+  Y +NR+PT+  +  T YE WH +KP++DH ++FG  AY +L SQRR K   K +  +F+GY+ +S  YR+
Sbjct:  456 NGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYNNESKGYRL 577          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 125 bits (314), Expect = 6.400e-31
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 0
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 122
            N IK++ + +Y PQQNGVAER   +I E+AR+ +    +   YWAEAVH+  Y +NR+PT+  +  T YE WH +KP++DH ++FG  AY +L SQRR K   K +  +F+GY  +S  YR+
Sbjct:  564 NGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRL 685          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 124 bits (311), Expect = 1.580e-30
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 0
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 122
            N IK++ + +Y PQQNGVAER   +I E+AR  +    +   YWAEAVH+  Y +NR+PT+  +  T YE WH +KP++DH ++FG  AY +L SQRR K   K +  +F+GY  +S  YR+
Sbjct:  594 NGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRL 715          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 124 bits (311), Expect = 1.630e-30
Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 124
            N I+ + + +Y PQQNGVAER   ++ EL+R+ M    +   YWAEAV    Y LNRT T+     T YE W+G KP ++HL+VFGC AYV +  QRR KL  K    VF+GY E+S  Y++YN
Sbjct:  579 NCIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 702          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A251UNU7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UNU7_HELAN)

HSP 1 Score: 124 bits (311), Expect = 1.650e-30
Identity = 59/124 (47.58%), Postives = 77/124 (62.10%), Query Frame = 0
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 124
            N I+ + + +Y PQQNGVAER   ++ EL+R+ M    +   YWAEA+    Y LNRT T+     T YE W+G KP ++HLRVFGC AYV +  QRR KL  K    VF+GY + S  YR+YN
Sbjct:  942 NGIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKQLSDCYWAEAIACATYILNRTVTKTRPDTTPYEAWNGSKPNVEHLRVFGCLAYVHIPKQRRDKLNMKTEKTVFVGYSDRSKGYRLYN 1065          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN)

HSP 1 Score: 124 bits (311), Expect = 1.650e-30
Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 124
            N I+ + + +Y PQQNGVAER   ++ EL+R+ M    +   YWAEAV    Y LNRT T+     T YE W+G KP ++HL+VFGC AYV +  QRR KL  K    VF+GY E+S  Y++YN
Sbjct: 1331 NGIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 1454          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 124 bits (310), Expect = 2.130e-30
Identity = 56/120 (46.67%), Postives = 81/120 (67.50%), Query Frame = 0
Query:    3 IKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 122
            IK +++A+Y PQQNGVAER   S+ E+ R  +  A + ++YWAEA+++ VY  N +PT+P N  T YE WHG KP ++HLR+FGC A+  +   +R+KLG  A+   FLGY  D  +YR+
Sbjct:  124 IKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRL 242          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 123 bits (309), Expect = 2.950e-30
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 0
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 122
            N IK+E +A Y PQQNGVAER   +I E+AR+ +   ++   +WAEA+H+ V+ LNR+PT+     T +E WH  KP +D  ++FGCTAY  + SQ+R K  +K    +F+GY + S +YR+
Sbjct:  269 NGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRL 390          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0WJT9_9ASPA3.840e-3243.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A1R3HGA4_COCAP9.990e-3245.90Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A8J5FC91_ZINOF3.650e-3145.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F3N7_ZINOF6.400e-3145.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5GP83_ZINOF1.580e-3045.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A251UIF2_HELAN1.630e-3047.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A251UNU7_HELAN1.650e-3047.58Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A251SKN6_HELAN1.650e-3047.58Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A2M4CK12_ANODA2.130e-3046.67Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A4Y1QWW3_PRUDU2.950e-3044.26Transposable element protein n=1 Tax=Prunus dulcis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..104
e-value: 4.6E-11
score: 44.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 13..123
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 13..123
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..76
score: 8.665
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig64766contigH-paniculata_contig64766:373..744 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig64766.14301.1mRNA_H-paniculata_contig64766.14301.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig64766 373..744 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig64766.14301.1 ID=prot_H-paniculata_contig64766.14301.1|Name=mRNA_H-paniculata_contig64766.14301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHS
VVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRK
LGDKARAGVFLGYDEDSPSYRIYN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf