mRNA_H-paniculata_contig64766.14301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig64766.14301.1
Unique NamemRNA_H-paniculata_contig64766.14301.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 122 bits (306), Expect = 3.840e-32
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    7 IKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 372
            ++ + + AY PQQNGV ER   ++ E+AR+ +I  ++ +++WAEAV++ VY LNR PT+     T  E W G+KP +DH R+FGC  YV +  Q+R KL +K   G+FLGY   S  Y  +N
Sbjct:   78 LEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFN 199          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 127 bits (320), Expect = 9.990e-32
Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    7 IKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 372
            I+ +F+ +Y PQQNGV+ER   ++ E++R  +    + +++WAEAV + VY LNR  TR  NG T YE W+G KP +DHLR+FGC  Y  +   +R KL  KA  G+FLGY  +   YR+YN
Sbjct:  430 IEHQFTVSYTPQQNGVSERKNRTVMEMSRCLLFEKKLPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYN 551          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A8J5FC91_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FC91_ZINOF)

HSP 1 Score: 125 bits (315), Expect = 3.650e-31
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 366
            N IK++ + +Y PQQNGVAER   +I E+AR+ +    +   YWAEAVH+  Y +NR+PT+  +  T YE WH +KP++DH ++FG  AY +L SQRR K   K +  +F+GY+ +S  YR+
Sbjct:  456 NGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYNNESKGYRL 577          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 125 bits (314), Expect = 6.400e-31
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 366
            N IK++ + +Y PQQNGVAER   +I E+AR+ +    +   YWAEAVH+  Y +NR+PT+  +  T YE WH +KP++DH ++FG  AY +L SQRR K   K +  +F+GY  +S  YR+
Sbjct:  564 NGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRL 685          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 124 bits (311), Expect = 1.580e-30
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 366
            N IK++ + +Y PQQNGVAER   +I E+AR  +    +   YWAEAVH+  Y +NR+PT+  +  T YE WH +KP++DH ++FG  AY +L SQRR K   K +  +F+GY  +S  YR+
Sbjct:  594 NGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRL 715          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 124 bits (311), Expect = 1.630e-30
Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 372
            N I+ + + +Y PQQNGVAER   ++ EL+R+ M    +   YWAEAV    Y LNRT T+     T YE W+G KP ++HL+VFGC AYV +  QRR KL  K    VF+GY E+S  Y++YN
Sbjct:  579 NCIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 702          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A251UNU7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UNU7_HELAN)

HSP 1 Score: 124 bits (311), Expect = 1.650e-30
Identity = 59/124 (47.58%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 372
            N I+ + + +Y PQQNGVAER   ++ EL+R+ M    +   YWAEA+    Y LNRT T+     T YE W+G KP ++HLRVFGC AYV +  QRR KL  K    VF+GY + S  YR+YN
Sbjct:  942 NGIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKQLSDCYWAEAIACATYILNRTVTKTRPDTTPYEAWNGSKPNVEHLRVFGCLAYVHIPKQRRDKLNMKTEKTVFVGYSDRSKGYRLYN 1065          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN)

HSP 1 Score: 124 bits (311), Expect = 1.650e-30
Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRIYN 372
            N I+ + + +Y PQQNGVAER   ++ EL+R+ M    +   YWAEAV    Y LNRT T+     T YE W+G KP ++HL+VFGC AYV +  QRR KL  K    VF+GY E+S  Y++YN
Sbjct: 1331 NGIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 1454          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 124 bits (310), Expect = 2.130e-30
Identity = 56/120 (46.67%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    7 IKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 366
            IK +++A+Y PQQNGVAER   S+ E+ R  +  A + ++YWAEA+++ VY  N +PT+P N  T YE WHG KP ++HLR+FGC A+  +   +R+KLG  A+   FLGY  D  +YR+
Sbjct:  124 IKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRL 242          
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 123 bits (309), Expect = 2.950e-30
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHSVVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRKLGDKARAGVFLGYDEDSPSYRI 366
            N IK+E +A Y PQQNGVAER   +I E+AR+ +   ++   +WAEA+H+ V+ LNR+PT+     T +E WH  KP +D  ++FGCTAY  + SQ+R K  +K    +F+GY + S +YR+
Sbjct:  269 NGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRL 390          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64766.14301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0WJT9_9ASPA3.840e-3243.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A1R3HGA4_COCAP9.990e-3245.90Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A8J5FC91_ZINOF3.650e-3145.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F3N7_ZINOF6.400e-3145.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5GP83_ZINOF1.580e-3045.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A251UIF2_HELAN1.630e-3047.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A251UNU7_HELAN1.650e-3047.58Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A251SKN6_HELAN1.650e-3047.58Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A2M4CK12_ANODA2.130e-3046.67Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A4Y1QWW3_PRUDU2.950e-3044.26Transposable element protein n=1 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig64766contigH-paniculata_contig64766:373..744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score122.1
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930754.8422782-CDS-H-paniculata_contig64766:372..7441622930754.8422782-CDS-H-paniculata_contig64766:372..744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64766 373..744 +
1691481437.6544855-CDS-H-paniculata_contig64766:372..7441691481437.6544855-CDS-H-paniculata_contig64766:372..744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64766 373..744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig64766.14301.1prot_H-paniculata_contig64766.14301.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig64766 373..744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig64766.14301.1

>prot_H-paniculata_contig64766.14301.1 ID=prot_H-paniculata_contig64766.14301.1|Name=mRNA_H-paniculata_contig64766.14301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
NSIKQEFSAAYIPQQNGVAERSWCSIFELARANMITANMGRRYWAEAVHS
VVYSLNRTPTRPHNGGTSYEKWHGEKPMLDHLRVFGCTAYVMLQSQRRRK
LGDKARAGVFLGYDEDSPSYRIYN
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mRNA from alignment at H-paniculata_contig64766:373..744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig64766.14301.1 ID=mRNA_H-paniculata_contig64766.14301.1|Name=mRNA_H-paniculata_contig64766.14301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig64766:373..744+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAGCATCAAGCAGGAGTTCTCTGCCGCCTACATACCGCAACAAAACGG TGTGGCGGAGCGCAGCTGGTGCAGCATTTTCGAGCTGGCAAGAGCCAACA TGATCACCGCCAACATGGGCCGTCGATATTGGGCGGAAGCGGTGCACTCG GTAGTATACTCCCTAAATCGCACCCCGACGCGACCGCACAACGGAGGAAC GTCGTACGAAAAATGGCACGGCGAGAAACCAATGTTGGACCACCTTCGCG TCTTCGGCTGCACAGCGTATGTTATGCTCCAGTCGCAGCGGAGACGCAAG CTTGGCGACAAAGCCCGGGCGGGGGTGTTTCTGGGGTACGACGAGGATAG CCCGAGTTATCGCATATATAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig64766:373..744+

>mRNA_H-paniculata_contig64766.14301.1 ID=mRNA_H-paniculata_contig64766.14301.1|Name=mRNA_H-paniculata_contig64766.14301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig64766:373..744+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAGCATCAAGCAGGAGTTCTCTGCCGCCTACATACCGCAACAAAACGG
TGTGGCGGAGCGCAGCTGGTGCAGCATTTTCGAGCTGGCAAGAGCCAACA
TGATCACCGCCAACATGGGCCGTCGATATTGGGCGGAAGCGGTGCACTCG
GTAGTATACTCCCTAAATCGCACCCCGACGCGACCGCACAACGGAGGAAC
GTCGTACGAAAAATGGCACGGCGAGAAACCAATGTTGGACCACCTTCGCG
TCTTCGGCTGCACAGCGTATGTTATGCTCCAGTCGCAGCGGAGACGCAAG
CTTGGCGACAAAGCCCGGGCGGGGGTGTTTCTGGGGTACGACGAGGATAG
CCCGAGTTATCGCATATATAACAACAGCATCAAGCAGGAGTTCTCTGCCG
CCTACATACCGCAACAAAACGGTGTGGCGGAGCGCAGCTGGTGCAGCATT
TTCGAGCTGGCAAGAGCCAACATGATCACCGCCAACATGGGCCGTCGATA
TTGGGCGGAAGCGGTGCACTCGGTAGTATACTCCCTAAATCGCACCCCGA
CGCGACCGCACAACGGAGGAACGTCGTACGAAAAATGGCACGGCGAGAAA
CCAATGTTGGACCACCTTCGCGTCTTCGGCTGCACAGCGTATGTTATGCT
CCAGTCGCAGCGGAGACGCAAGCTTGGCGACAAAGCCCGGGCGGGGGTGT
TTCTGGGGTACGACGAGGATAGCCCGAGTTATCGCATATATAAC
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