mRNA_H-paniculata_contig647.14297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig647.14297.1 vs. uniprot
Match: D7FQ52_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI) HSP 1 Score: 243 bits (621), Expect = 7.630e-65 Identity = 156/281 (55.52%), Postives = 195/281 (69.40%), Query Frame = 3
Query: 960 YDMDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKLHGMVNLKTRAFRCKHKG-PETGESVLMA---------------------QLSGRSLLCNRACRFAFPTEPALYCLKHKMDGMVDVLNPRCSMGDCMEFPTHGYEGDQPTFCMTHMATGMKAIVAQSPNIMHWSTEARKQAAATARESSRLLNEREAGSAKVTPLPPKTDPDIRRKMQEAHASAARTIVAARPIEG--LSAGTCPLPPPQEEPTLEELALAFGEASGNPL 1730
+ DRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHK GMVNLKTRAFRCKH+G P+ + S R++ CNRACRFA+P E A+YC H ++GMVDVLNP+CSM DC+E PT+G+ G+QPTFCM H GM+ I+ QS N++HWS+EAR+QAAA+A E+ R+ R+AGSAKV+ LPPK D + K+Q+AH SAA+ + A+R +G AG+ +P +LALAFG + +P+
Sbjct: 246 FKTDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKTRAFRCKHRGEPKPXXXXXXXXXXXXXXXXXTRNGKGAPPNKKKSRRAVTCNRACRFAYPNEMAVYCAVHALEGMVDVLNPQCSMDDCLEIPTYGFAGEQPTFCMVHSGPGMQVIMPQSTNVLHWSSEARRQAAASALEAKRIAGLRQAGSAKVSTLPPKKDINGLMKIQKAHMSAAKMVAASRVSDGGLNDAGSSLVP-------TSDLALAFGASMDDPM 519
BLAST of mRNA_H-paniculata_contig647.14297.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI) HSP 1 Score: 175 bits (444), Expect = 3.370e-41 Identity = 310/527 (58.82%), Postives = 350/527 (66.41%), Query Frame = 3
Query: 240 CEFQGCKKPLTYGSDPQQGRKYCYLHKDTPQVDIRITRCAIVGCDAKPNFGYESEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPSFNYKGQRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYGDSNKTAGRPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDMDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKLHGMVNLKTRAFRCKHKGPE---TGESVLMAQLSGRSLLCNRACRFAFPTEPALYCLKHKMDGMVDVLNPRCSMGDCMEFPTHGYEGDQPTFCMTHMATGMKAIVAQSPNIMHWSTEARKQAAATARESSRLLNEREAGSAKVTPLPPKTDPDIRRKMQEAHA---------------SAARTIVAARPIEGLSAGTCPLPPP---QEEP--------TLEELALAFGEASGNPLH 1733
C CKK Y Q+ KYC+LHK +D+R RC + C+ +P++GY+ EAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NY GQRK XXXXXXXXXXXXXXXXXXXXXXXXXXXX GRP++ XXXXXXXXXXXXXXXXXXXXXXXXX YD DR+RRRCRL XXXXXXXXXXXXXXXX CG G K RFCSEHK GM+NLKTRAFRCK++G + +M +G++ CNRACR+A+P E A+YC KHK++GMVDV+NP C MK I AQ P +HWS E R+QA A ARE +++ E EAGSA+ TPLPPK ++M+ AA +A E LSA T P+ PP EE T ELALAF + +H
Sbjct: 5 CGEPECKKQPYYAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRPMWCPDXXXXXXXXXXXXXXXXXXXXXXXXXGYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGVAGLGIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKPIAAQKPTGLHWSAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAANMALNSREMLSASTYPIVPPFTTNEEVAAPPGMSITSAELALAFSGLPEDDMH 531
BLAST of mRNA_H-paniculata_contig647.14297.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE) HSP 1 Score: 128 bits (321), Expect = 2.940e-26 Identity = 87/229 (37.99%), Postives = 115/229 (50.22%), Query Frame = 3
Query: 1134 KTRAFRCKHKGPE---TGESVLMAQLSGRSLLCNRACRFAFPTEPALYCLKHKMDGMVDVLNPRCSMGDCMEFPTHGYEGDQPTFCMTHMATGMKAIVAQSPNIMHWSTEARKQAAATARESSRLLNEREAGSAKVTPLPPKTDPDIRRKMQEAHA---------------SAARTIVAARPIEGLSAGTCPLPPP---QEEP--------TLEELALAFGEASGNPLH 1733
+TRAFRCK++G + +M +G++ CNRACR+A+P E A+YC KHK++GMVDV+NP C HMA GMK I AQ P +HW+ E R+QA A ARE +++ E EAGSA+ TPLPPK ++M+ AA +A E LSA T P+ PP EE T ELALAF + +H
Sbjct: 384 QTRAFRCKYRGVAGLGIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCK---------------------AHMAVGMKPIAAQKPTGLHWNAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAANMALNSREMLSASTYPIVPPFTTNEEMAAPPGMSITSAELALAFSGLPEDDMH 591 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig647.14297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig647.14297.1 >prot_H-paniculata_contig647.14297.1 ID=prot_H-paniculata_contig647.14297.1|Name=mRNA_H-paniculata_contig647.14297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1003bp MASCEFQGCKKPLTYGSDPQQGRKYCYLHKDTPQVDIRITRCAIVGCDAKback to top mRNA from alignment at H-paniculata_contig647:24232..33978+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig647.14297.1 ID=mRNA_H-paniculata_contig647.14297.1|Name=mRNA_H-paniculata_contig647.14297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9747bp|location=Sequence derived from alignment at H-paniculata_contig647:24232..33978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig647:24232..33978+ >mRNA_H-paniculata_contig647.14297.1 ID=mRNA_H-paniculata_contig647.14297.1|Name=mRNA_H-paniculata_contig647.14297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6018bp|location=Sequence derived from alignment at H-paniculata_contig647:24232..33978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |