mRNA_H-paniculata_contig6464.14292.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6464.14292.1 vs. uniprot
Match: D8LES9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES9_ECTSI) HSP 1 Score: 448 bits (1152), Expect = 1.960e-150 Identity = 229/350 (65.43%), Postives = 274/350 (78.29%), Query Frame = 1
Query: 205 MTSYGEARLMGAPRANLVDDLTQVSGLILAFGCVIAIPAVHDLVGVAAEDVDWNGAEDVFPPILGLLANLTVSVFGLSSIFLGFQYLACKWGSKFGSLVGLAITLAAWFPFLVTIARIIFQADKKTPGG---PLSI--PATS-TDSEFNSIAIMGILGFYGYAGTV-SALTFLHWKMYRYFAGYATTYTASYYRSRLTYYGFLVVMVGVVQIALGSYVQDHYGDGQLSEPVAVGPFFILWPEISIAVGLVQFIYGCMILYRSTTPGVGPSTGNKDQGLFSFQCMAWLLFLISVGCQVMGQVALHVAPTPALFLGNVIGFTIFPIYLDVMAHTTPENVTSDMFSTAKDIGS 1233
MTSYGEARLM +PRANLVDDLT SGLILA+G ++ I DL +A+ VDW+G++ VFPPI LLA LTV++FGL S+FLGFQY+A +WGSK SL GL ITLAAWFPFL T+A I FQAD GG PL I P S + E NSIA+MGILGF+GYAGTV ALTFL WKMYR+F G A+TY+A+YYRSRL YYGFL +MVG +Q+ALGS+V+ +G GQL PV GPFFILWPE+SI VG+ Q ++G ILYRSTTPGVGPSTGNKD G+F FQ +AW +FLIS+G QV+GQV+L + PALF+ NVIGF +FPIYLDV++HTTPENVT DMFS +K +GS
Sbjct: 1 MTSYGEARLMDSPRANLVDDLTTTSGLILAYGIIVIIGGTVDLTAASAKGVDWSGSDGVFPPIAILLAQLTVTLFGLVSMFLGFQYVASRWGSKVTSLFGLGITLAAWFPFLTTVALIAFQADHGNVGGGAGPLQILHPTISVSQGEINSIALMGILGFWGYAGTVIGALTFLQWKMYRFFQGGASTYSATYYRSRLGYYGFLSLMVGALQVALGSFVEGMFGWGQLPSPVVSGPFFILWPELSITVGVCQVLFGFYILYRSTTPGVGPSTGNKDAGMFKFQVVAWSVFLISMGAQVLGQVSLAASAMPALFIRNVIGFALFPIYLDVLSHTTPENVTPDMFSMSKTVGS 350
BLAST of mRNA_H-paniculata_contig6464.14292.1 vs. uniprot
Match: A0A836CMW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW6_9STRA) HSP 1 Score: 192 bits (487), Expect = 7.860e-52 Identity = 122/330 (36.97%), Postives = 179/330 (54.24%), Query Frame = 1
Query: 262 DLTQVSGLILAFGCVIAIPAVHDLVGVAAEDVDWNGAEDVFPPILGLLANLTVSVFGLSSIFLGFQYLACKWGSKFGSLVGLAITLAAWFPFLVTIARIIFQADK----KTPGGPLSIPATSTDSEFNSIAIMGILGFYGY-AGTVSALTFLHWKMYR-YFAGYATTYTASYYRSRLTYYGFLVVMVGVVQIALGSYVQDHYGDGQLSEPVAVGPFFILWPEISIAVGLVQFIYGCMILYRSTTPGVGPSTGNKDQGLFSFQCMAW---LLFLISVGCQVMGQVALHVAPTPALFLGNVI----GFTIFPIYLDVMAHTTPENVTSDMFS 1212
++ Q +GL + FG + + A + V W G FPPI LLANLT ++FGLS+I +G +L GS S + IT AAWFPFL I+ I F D P P+++ T+TD N++ + LGF Y A V ALTF K++R + T YT +YY SR TYYGFL ++ GVVQ+ALG+YVQD++G +L EP+A GPF + + + SIA+G++ G +++ RS +KD + + W ++ + QV+ QVA VAP PA + + +FP+YLD+ + + PE SD +S
Sbjct: 11 EVRQTAGLAILFGSMAVLSACIGISEVTDIGQKWAGNSLTFPPIALLLANLTQALFGLSNIGVGLAWLVSGKGSVGWSFFSMVITYAAWFPFLTVISLISFTGDNYPQAPQPFIPMTLMPTTTD--VNAVTALAALGFIAYGANLVGALTFCATKLFRAHSVAGVTAYTGAYYASRQTYYGFLTLLAGVVQLALGAYVQDNFGSDRLLEPIAAGPFTVTYSQASIAMGVLVMFQGALLMARSYM--------SKDSKVATGAAFDWWSVFAYVTVLAVQVLTQVA--VAPAPAAGRASTVFETLALAVFPVYLDIKSRSAPEAFPSDFYS 328
BLAST of mRNA_H-paniculata_contig6464.14292.1 vs. uniprot
Match: K0TGC2_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGC2_THAOC) HSP 1 Score: 109 bits (272), Expect = 3.230e-22 Identity = 96/334 (28.74%), Postives = 147/334 (44.01%), Query Frame = 1
Query: 208 TSYGEARLMGAPRANLVDDLTQVSGLILAFGCVIAIPAVHDLVGVAAEDVDWNGAEDVFPPILGLLANLTVSVFGLSSIFLGFQYLACKWGSKFGSLVGLAITLAAWFPFLVTIARI---IFQADKKTPGGPLSIPATSTDSEFNSIAIMGILGFYGYA-GTVSALTFLHWKMYRYFAGYATTYTASYYRSRLTYYGFLVVMVGVVQIALGSYVQDHYGDGQLSEPVAVGPFFILWPEISIAVGLVQFIYGCMILYRSTTPGVGP-STGNKDQGLFSFQCMAWLLFLISVGCQVMGQVALHVAPTPALFLGNVIGFTIFPIYLDVMAHTTPENV 1194
T+ A L A L D SGL+L G A A D+V +A D +G P+ L+A + FGL+ + +GF GS + + + AW PFLV ++ I I + P P ++ +F + M LG YA G + + + M+ AG + Y+R R Y L+ + G+VQ+ALGS++ + YG+G L P+ F + PEIS+ +GL+Q I + + RS P S + F + CM + L V Q G A APT A +G + P +LD + PE++
Sbjct: 4 TNSSTASLPHAGAERLKADYRMYSGLLLTLGLCAAYGAFADIVSLA--DTAKSGL-----PLATLIAAVFQGFFGLTCMGVGFTGAVMDKGSTLLTTIAASSIQLAWMPFLVGLSTIGMGIVSDPSENPFIPALYDPSAAAVKF--VGSMAFLGLMSYAIGFIXXXXXMSFSMHSIQAGKPQDRSGVYFRGRAKLYNGLLFLAGLVQLALGSFIINTYGNGPLEAPIFAVVFLVFSPEISVTIGLLQMIVSTIGIVRSLREKPAPDSVWFQTLCFFMYFCMMSMQVLAQVA-QAPGDAAASAAPTLACVY---LGIALMPAFLDWKMNNLPEDL 324
BLAST of mRNA_H-paniculata_contig6464.14292.1 vs. uniprot
Match: A0A7R9WM98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM98_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.950e-8 Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 769 RLTYYGFLVVMVGVVQIALGSYVQDHYGDGQLSE-PVAVGPFFILWPEISIAVGLVQFIYGCMILYRSTTPGVGPSTGNKDQGLFSFQCMAWLLFLISVGCQVM 1077
RL +Y F +++ G+ Q+ LGS++ D +G G L PVAV +FI +PEI+IAVGLVQ + R G G G + +FQ ++ +L+ + Q+M
Sbjct: 2 RLHFYSFTILLAGLSQLLLGSFLLDRFGSGPLENGPVAVAMYFINFPEIAIAVGLVQVLNAIFGFAR----GFGLWNGKDNH---TFQATLFVQWLMVITFQIM 98
BLAST of mRNA_H-paniculata_contig6464.14292.1 vs. uniprot
Match: A0A7S3A465_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A465_9RHOD) HSP 1 Score: 59.3 bits (142), Expect = 8.630e-6 Identity = 66/269 (24.54%), Postives = 111/269 (41.26%), Query Frame = 1
Query: 382 FPPILGLLANLTVSVFGLSSIFLGFQYLACKWGSKFGSL--VGLAITLAAWFPFLVTIAR--IIFQADKKTPGGPLSIPATSTDSEFNSIAIMGILGFYGYAGTVSALTFLHWKMYRYFAGYATTYTASYYRSRLTYYGFLVVMVGVVQIALGSYVQDHYGDGQLSEPVAVGPFFILWPEISIAVGLVQFIYGCMILYRSTTPGVGPSTGNKDQGLFSFQCMAWLLFLISVGCQVMGQVALHVAPTPALFLGNVIGFTIFPIYLDVMAH 1176
F L L+A +FGL+ +G + + G+KF ++ +GLA L WF F V + I + +T PL+I +F+ + M + G + + F+ + R T Y + RL + + + G+V + GS YG L A P FI++P ++IA G+VQF++G + + G + + F ++L L ++ TPA FLG ++ T L M H
Sbjct: 62 FSETLRLVAACGEVLFGLAGFLMGIALILFRQGNKFVTISWMGLAFVLG-WFVFSVWVLAFPIWNLVNVRTAPEPLTI------QQFDLLRTMSLFGGIFWCFALQGGQFMVGNVIRGHQDQGKTRGEKYAQIRLIMWSLNIALSGIVFVIAGSVASVAYGAVLLDPVQAFPPIFIVYPGLTIAAGIVQFLFGTFAISAAIM-------GRMFKTVTLFAAFSYLFSLATI------------VWTPA-FLGGIVPATTLLAGLCTMIH 303 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6464.14292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6464.14292.1 >prot_H-paniculata_contig6464.14292.1 ID=prot_H-paniculata_contig6464.14292.1|Name=mRNA_H-paniculata_contig6464.14292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=346bp MTSYGEARLMGAPRANLVDDLTQVSGLILAFGCVIAIPAVHDLVGVAAEDback to top mRNA from alignment at H-paniculata_contig6464:1652..7909- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6464.14292.1 ID=mRNA_H-paniculata_contig6464.14292.1|Name=mRNA_H-paniculata_contig6464.14292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6258bp|location=Sequence derived from alignment at H-paniculata_contig6464:1652..7909- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6464:1652..7909- >mRNA_H-paniculata_contig6464.14292.1 ID=mRNA_H-paniculata_contig6464.14292.1|Name=mRNA_H-paniculata_contig6464.14292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at H-paniculata_contig6464:1652..7909- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |