mRNA_H-paniculata_contig64622.14290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 113 bits (283), Expect = 5.590e-27 Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 28 RKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
+ +W EA +VY L+ +P + G TP+E WHG TP ++HL+VFGC Y + +R KLD K VG+FLGY S YRI++P K I +SRNV+FDE
Sbjct: 581 KTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI) HSP 1 Score: 105 bits (263), Expect = 2.780e-24 Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 19 NMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRR-KLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDEE 330
N+ YW EA A Y + P +P G TP+E W+GT P++DHLR+FGC A+VM + R L + VGVF+GYD+ S YR+H P+ ++ +SRNV F E+
Sbjct: 338 NLPLVYWAEAASTAAYLRNHRPSRPLGGKTPFELWYGTPPRIDHLRIFGCLAFVMLPDKAREHSLSARARVGVFIGYDKYSKGYRVHFPDTGALAISRNVDFHED 442
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN) HSP 1 Score: 100 bits (249), Expect = 2.180e-22 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
S M + YW EA A Y L+ + TPYE W+G P ++HL+VFGC AYV Q+R KLD K VF+GY E+S Y++++P++ I +SR+V FDE
Sbjct: 610 SMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFDE 718
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN) HSP 1 Score: 100 bits (248), Expect = 3.010e-22 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
S M + YW EA A Y L+ + TPYE W+G P ++HL+VFGC AYV Q+R KLD K VF+GY E+S Y++++P++ I +SR+V FDE
Sbjct: 1362 SMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFDE 1470
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251UCI2_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCI2_HELAN) HSP 1 Score: 95.9 bits (237), Expect = 8.880e-21 Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
S + NM + +W EA R A+Y L+ VP + TP+E G P L+HL+VFGCTAY Q++KLDD+ V+LG +E S +YR++ P I +SR+V+F E
Sbjct: 162 SMLKAMNMPQNFWGEAVRHAIYVLNRVPTKALVNKTPFEALKGRKPNLEHLKVFGCTAYAKVLPLQQKKLDDRSAPMVYLGIEEGSKAYRLYDPAKNKICVSRDVKFME 270
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251UNU7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UNU7_HELAN) HSP 1 Score: 95.9 bits (237), Expect = 9.170e-21 Identity = 46/109 (42.20%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
S M + YW EA A Y L+ + TPYE W+G+ P ++HLRVFGC AYV Q+R KL+ K VF+GY + S YR+++P I +SR+V FDE
Sbjct: 973 SMMNAKQLSDCYWAEAIACATYILNRTVTKTRPDTTPYEAWNGSKPNVEHLRVFGCLAYVHIPKQRRDKLNMKTEKTVFVGYSDRSKGYRLYNPLTNKIIISRDVVFDE 1081
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A2I0AIC1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AIC1_9ASPA) HSP 1 Score: 94.7 bits (234), Expect = 2.170e-20 Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
S + + ++W E+ AVY L+ P + TPYE W G P++ HL++FGC AYV S R KL+DK +F+GY S +YR+++P +K + +SR+V F+E
Sbjct: 4 SLLKAKGIPNQFWAESVATAVYLLNISPTKAVLNRTPYEVWKGRKPRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLIISRSVIFEE 112
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A0L7QJB2_9HYME (Copia protein (Fragment) n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QJB2_9HYME) HSP 1 Score: 88.6 bits (218), Expect = 3.670e-20 Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query: 7 MTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFD 324
+ + + ++W EA AA Y + + + H G TPYE WH P + H++ FGC AYV+ + R+K D K G F+GY+E+ +YR++ PE SI+ +VRFD
Sbjct: 33 LADSKLSLRFWGEAANAAAYTRNRIKSRVH-GKTPYEVWHQRKPNVQHMKRFGCMAYVLSKGGTRKKFDSKIKRGFFVGYNENK-TYRVYIPETNSIKCDCDVRFD 136
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: G4TYM6_SERID (Integrase catalytic domain-containing protein n=3 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TYM6_SERID) HSP 1 Score: 94.0 bits (232), Expect = 4.160e-20 Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
+K+T AN+ +W A A V+ + + HNG TPYE WHG P +DHLRVFGC AYV QR LD +F+GY D P + +P+ + I S + FDE
Sbjct: 612 AKLTEANLPSSFWGFAALATVHEFNRARV--HNGKTPYEHWHGKAPSVDHLRVFGCLAYVFVPKSQRNALDSHTEKCIFVGYPSDRPGWVFWNPQTRKIIHSDSAAFDE 718
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: G4TZX2_SERID (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TZX2_SERID) HSP 1 Score: 93.2 bits (230), Expect = 6.720e-20 Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
+K+T AN+ +W A A V+ + + HNG TPYE WHG P +DHLRVFGC AYV QR LD +F+GY D P + +P+ + I S + FDE
Sbjct: 95 AKLTEANLPPSFWGFAVLATVHEFNRARV--HNGKTPYEHWHGKAPSVDHLRVFGCLAYVFIPKSQRNALDSHTEKCIFVGYPSDRPGWVFWNPQTRKIIHSDSAVFDE 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig64622.14290.1 >prot_H-paniculata_contig64622.14290.1 ID=prot_H-paniculata_contig64622.14290.1|Name=mRNA_H-paniculata_contig64622.14290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp MTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRback to top mRNA from alignment at H-paniculata_contig64622:182..511+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig64622.14290.1 ID=mRNA_H-paniculata_contig64622.14290.1|Name=mRNA_H-paniculata_contig64622.14290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig64622:182..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig64622:182..511+ >mRNA_H-paniculata_contig64622.14290.1 ID=mRNA_H-paniculata_contig64622.14290.1|Name=mRNA_H-paniculata_contig64622.14290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig64622:182..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |