mRNA_H-paniculata_contig64622.14290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig64622.14290.1
Unique NamemRNA_H-paniculata_contig64622.14290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 113 bits (283), Expect = 5.590e-27
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   28 RKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            + +W EA   +VY L+ +P +   G TP+E WHG TP ++HL+VFGC  Y +    +R KLD K  VG+FLGY   S  YRI++P  K I +SRNV+FDE
Sbjct:  581 KTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI)

HSP 1 Score: 105 bits (263), Expect = 2.780e-24
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   19 NMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRR-KLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDEE 330
            N+   YW EA   A Y  +  P +P  G TP+E W+GT P++DHLR+FGC A+VM   + R   L  +  VGVF+GYD+ S  YR+H P+  ++ +SRNV F E+
Sbjct:  338 NLPLVYWAEAASTAAYLRNHRPSRPLGGKTPFELWYGTPPRIDHLRIFGCLAFVMLPDKAREHSLSARARVGVFIGYDKYSKGYRVHFPDTGALAISRNVDFHED 442          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 100 bits (249), Expect = 2.180e-22
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            S M    +   YW EA   A Y L+    +     TPYE W+G  P ++HL+VFGC AYV    Q+R KLD K    VF+GY E+S  Y++++P++  I +SR+V FDE
Sbjct:  610 SMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFDE 718          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN)

HSP 1 Score: 100 bits (248), Expect = 3.010e-22
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            S M    +   YW EA   A Y L+    +     TPYE W+G  P ++HL+VFGC AYV    Q+R KLD K    VF+GY E+S  Y++++P++  I +SR+V FDE
Sbjct: 1362 SMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFDE 1470          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251UCI2_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCI2_HELAN)

HSP 1 Score: 95.9 bits (237), Expect = 8.880e-21
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            S +   NM + +W EA R A+Y L+ VP +     TP+E   G  P L+HL+VFGCTAY      Q++KLDD+    V+LG +E S +YR++ P    I +SR+V+F E
Sbjct:  162 SMLKAMNMPQNFWGEAVRHAIYVLNRVPTKALVNKTPFEALKGRKPNLEHLKVFGCTAYAKVLPLQQKKLDDRSAPMVYLGIEEGSKAYRLYDPAKNKICVSRDVKFME 270          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A251UNU7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UNU7_HELAN)

HSP 1 Score: 95.9 bits (237), Expect = 9.170e-21
Identity = 46/109 (42.20%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            S M    +   YW EA   A Y L+    +     TPYE W+G+ P ++HLRVFGC AYV    Q+R KL+ K    VF+GY + S  YR+++P    I +SR+V FDE
Sbjct:  973 SMMNAKQLSDCYWAEAIACATYILNRTVTKTRPDTTPYEAWNGSKPNVEHLRVFGCLAYVHIPKQRRDKLNMKTEKTVFVGYSDRSKGYRLYNPLTNKIIISRDVVFDE 1081          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A2I0AIC1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AIC1_9ASPA)

HSP 1 Score: 94.7 bits (234), Expect = 2.170e-20
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            S +    +  ++W E+   AVY L+  P +     TPYE W G  P++ HL++FGC AYV   S  R KL+DK    +F+GY   S +YR+++P +K + +SR+V F+E
Sbjct:    4 SLLKAKGIPNQFWAESVATAVYLLNISPTKAVLNRTPYEVWKGRKPRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLIISRSVIFEE 112          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: A0A0L7QJB2_9HYME (Copia protein (Fragment) n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QJB2_9HYME)

HSP 1 Score: 88.6 bits (218), Expect = 3.670e-20
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    7 MTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFD 324
            +  + +  ++W EA  AA Y  + +  + H G TPYE WH   P + H++ FGC AYV+ +   R+K D K   G F+GY+E+  +YR++ PE  SI+   +VRFD
Sbjct:   33 LADSKLSLRFWGEAANAAAYTRNRIKSRVH-GKTPYEVWHQRKPNVQHMKRFGCMAYVLSKGGTRKKFDSKIKRGFFVGYNENK-TYRVYIPETNSIKCDCDVRFD 136          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: G4TYM6_SERID (Integrase catalytic domain-containing protein n=3 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TYM6_SERID)

HSP 1 Score: 94.0 bits (232), Expect = 4.160e-20
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            +K+T AN+   +W  A  A V+  +   +  HNG TPYE WHG  P +DHLRVFGC AYV     QR  LD      +F+GY  D P +   +P+ + I  S +  FDE
Sbjct:  612 AKLTEANLPSSFWGFAALATVHEFNRARV--HNGKTPYEHWHGKAPSVDHLRVFGCLAYVFVPKSQRNALDSHTEKCIFVGYPSDRPGWVFWNPQTRKIIHSDSAAFDE 718          
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Match: G4TZX2_SERID (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TZX2_SERID)

HSP 1 Score: 93.2 bits (230), Expect = 6.720e-20
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 SKMTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLSRNVRFDE 327
            +K+T AN+   +W  A  A V+  +   +  HNG TPYE WHG  P +DHLRVFGC AYV     QR  LD      +F+GY  D P +   +P+ + I  S +  FDE
Sbjct:   95 AKLTEANLPPSFWGFAVLATVHEFNRARV--HNGKTPYEHWHGKAPSVDHLRVFGCLAYVFIPKSQRNALDSHTEKCIFVGYPSDRPGWVFWNPQTRKIIHSDSAVFDE 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64622.14290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA5.590e-2748.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A177U095_9BASI2.780e-2444.76Integrase catalytic domain-containing protein n=2 ... [more]
A0A251UIF2_HELAN2.180e-2242.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A251SKN6_HELAN3.010e-2242.20Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A251UCI2_HELAN8.880e-2142.20Putative ribonuclease H-like domain, Reverse trans... [more]
A0A251UNU7_HELAN9.170e-2142.20Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A2I0AIC1_9ASPA2.170e-2038.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A0L7QJB2_9HYME3.670e-2038.68Copia protein (Fragment) n=1 Tax=Habropoda laborio... [more]
G4TYM6_SERID4.160e-2041.28Integrase catalytic domain-containing protein n=3 ... [more]
G4TZX2_SERID6.720e-2041.28Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig64622contigH-paniculata_contig64622:182..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.8
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog3641.EOY20321
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs383KH@33090,3GQES@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930752.5995626-UTR-H-paniculata_contig64622:181..1871622930752.5995626-UTR-H-paniculata_contig64622:181..187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig64622 182..187 +
1691481436.7146084-UTR-H-paniculata_contig64622:181..1871691481436.7146084-UTR-H-paniculata_contig64622:181..187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig64622 182..187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930752.6192966-CDS-H-paniculata_contig64622:187..5111622930752.6192966-CDS-H-paniculata_contig64622:187..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64622 188..511 +
1691481436.727508-CDS-H-paniculata_contig64622:187..5111691481436.727508-CDS-H-paniculata_contig64622:187..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64622 188..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig64622.14290.1prot_H-paniculata_contig64622.14290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig64622 188..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig64622.14290.1

>prot_H-paniculata_contig64622.14290.1 ID=prot_H-paniculata_contig64622.14290.1|Name=mRNA_H-paniculata_contig64622.14290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MTTANMGRKYWVEATRAAVYCLDPVPMQPHNGGTPYEKWHGTTPKLDHLR
VFGCTAYVMFQSQQRRKLDDKPWVGVFLGYDEDSPSYRIHHPENKSIQLS
RNVRFDEE
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mRNA from alignment at H-paniculata_contig64622:182..511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig64622.14290.1 ID=mRNA_H-paniculata_contig64622.14290.1|Name=mRNA_H-paniculata_contig64622.14290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig64622:182..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAAAGATGACCACCGCCAACATGGGCCGCAAGTATTGGGTGGAGGCGAC GCGCGCGGCTGTGTACTGCTTAGATCCCGTCCCGATGCAACCGCACAACG GAGGGACGCCGTATGAGAAATGGCACGGCACGACACCAAAGCTTGACCAC CTTCGTGTCTTCGGTTGCACGGCGTACGTGATGTTCCAGTCGCAGCAAAG ACGAAAACTCGATGACAAACCATGGGTGGGGGTGTTTCTGGGGTACGACG AGGATAGCCCCAGTTATCGCATACATCACCCGGAAAACAAGAGCATTCAG TTGAGCAGGAACGTAAGATTTGATGAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig64622:182..511+

>mRNA_H-paniculata_contig64622.14290.1 ID=mRNA_H-paniculata_contig64622.14290.1|Name=mRNA_H-paniculata_contig64622.14290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig64622:182..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACCGCCAACATGGGCCGCAAGTATTGGGTGGAGGCGACGCGCGC
GGCTGTGTACTGCTTAGATCCCGTCCCGATGCAACCGCACAACGGAGGGA
CGCCGTATGAGAAATGGCACGGCACGACACCAAAGCTTGACCACCTTCGT
GTCTTCGGTTGCACGGCGTACGTGATGTTCCAGTCGCAGCAAAGACGAAA
ACTCGATGACAAACCATGGGTGGGGGTGTTTCTGGGGTACGACGAGGATA
GCCCCAGTTATCGCATACATCACCCGGAAAACAAGAGCATTCAGTTGAGC
AGGAACGTAAGATTTGATGAAGAGATGACCACCGCCAACATGGGCCGCAA
GTATTGGGTGGAGGCGACGCGCGCGGCTGTGTACTGCTTAGATCCCGTCC
CGATGCAACCGCACAACGGAGGGACGCCGTATGAGAAATGGCACGGCACG
ACACCAAAGCTTGACCACCTTCGTGTCTTCGGTTGCACGGCGTACGTGAT
GTTCCAGTCGCAGCAAAGACGAAAACTCGATGACAAACCATGGGTGGGGG
TGTTTCTGGGGTACGACGAGGATAGCCCCAGTTATCGCATACATCACCCG
GAAAACAAGAGCATTCAGTTGAGCAGGAACGTAAGATTTGATGAAGAG
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