prot_H-paniculata_contig636.14160.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig636.14160.1
Unique Nameprot_H-paniculata_contig636.14160.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1034
Homology
BLAST of mRNA_H-paniculata_contig636.14160.1 vs. uniprot
Match: A0A6H5K2G0_9PHAE (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G0_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 2.640e-83
Identity = 397/1194 (33.25%), Postives = 506/1194 (42.38%), Query Frame = 0
Query:   12 KIFELQSALLEEGV---TEALLHECTLWFRPNHLQDIVTERSEAEGICGWPGCRKSLPSWGLAAARVFD---GVESGRFCCKVCMSKTTVLLAAIPSTSPYSREGVLRVACPSMFEKPAGNSE------HGATGDGAKKVYKRARRRD---------------------ILPAKRAESTNGNRQKNN------------VGPSSRAITGACEAPIAGAVEDGRRERKEGETGAGREDDSMDLVRGGIARVSIA-------------NSDPVEEKQNEESSKPSLSTLIRPEVPSAVPVASSSVALVGGRPPGMEASAAAAAAGNVKSLGGAAVISKEHSSVTRS-SDWGNVSFVPKSGPGS---------TVALHAMLAAAAAARPSLGVVEASXXXXXXXXXXXXXXXXXXXXXXXXVVVVTAPSQQQSESSPKIKPGGDQTRTTHESTTGSGVQQGKMSMVSLEPQSHSNKKGVS--FAAGTKASPPDTAALTASLLPRRTGLGTGXXXXXXXXXXXXXXXXXXXXXGSTGKPKPMHQKP--------------KAVLGAVMEKTPAVPIPM-MHTGSAGAGQSTGSEGGRVEGHLPRIQADLSFRVMPRGYEKDMKQDDDNGDGDGDDMVRAAGCYKGGEQ------------------ENGEDSNDXXXXXXXXXXXXXXXX-------DRAIWRETFGEEMPTDVAEGPWIDMDAIHDKAMREEFATTIGAFPLLWDALSEWVTPATRAVCRAGRAAAAAGTCPSAVKLENLTTASVVTAEAETERDSSKPDKTAALGAPNECPCSSECKGRSEKLPPSTTVVSTDCDAG----VSMD--VRKAATVAEAIEREARRHA---RGIGKA--------GKVGVSVDGGGGEVSAGVTITGALRHSSISAMVNVHLPQAEQALRAAV----VRRGEEDRDTE-GWQQSTSVQGKGARKANFRTFVWSNKKASPETTLMTPRAGLWVEAVADVPTAV---------------------VEQAHVRTERPAATCPEKNARYIGSGLV------RTGVGVKLAGSTNGVVKGRKGGGVAAAG------GTECRRAVATVIDTFD----GARTAGAVNLSIAQWKIVPVVLLAVLGLGDGAVGDGGGRS---GTDSSVCVAGDGVAGAEACAQICGPGVALSSREFELLMEVLLQD 1033
            +IFELQS+LL E V    EALL EC  WF P HLQDIV ERSEAEG CGWPGC K LPSW LAA  VFD   G + GRFC + CM+KT V ++AIP T PY+RE ++R+ACP      A  S       HGA G GAKKVYKRARRRD                     ++     E    +RQ+                P  +A  G   A    AV D     K  E   G   ++ D+  G   R                 ++   +   +  ++  S+S     E   +    S+ V               A+   NV+ +     +     + T S + W +V F   SG  S          V+ HA LAAA A   ++     S                              PS     + P  + GG ++ ++                                 FA GT                        XXXXXXXXXXXXXXXXXXXXX                           K+VLG V+E+ P+VP PM +  G    G +     G VEGHLP+I+ADLSFRVMPRG           G G G  +  AAG   G E+                  +  ED  +    XXXXXXXXXXXX       DRAIWRETFGEEMP +V+ G WIDMDA+ DK MREEFA++I  F LLW ALSEWV+P TRAVCRAGRAA              L++A          R SS+    AA  A +    ++ C   SE+ P   +  S+    G    V  D   RKA  VAEAIE E  RHA   R   KA        G    S  GGG  V  G T+TGALRH+ +S MVN+HL  AE+AL AA     VR G        G        G+     + + +VWS+  A        P  G WVE   + PTA                       ++     + PA          +           R    + +AG   G     +    AAAG      G ECRRAV+ VIDT +     A +A A +LSIAQWK+V VVLL  +GLG G            G  +      +    AEAC+++CG  + +S+REF +L++V+L++
Sbjct:   11 QIFELQSSLLAEDVGEIDEALLRECAAWFCPQHLQDIVIERSEAEGRCGWPGCSKKLPSWRLAAPLVFDLPEGEQLGRFCERACMAKTKVFMSAIPPTPPYTRENLVRLACPPPAPSSAEGSTSVNGDGHGAAGAGAKKVYKRARRRDLPXXXXXXXXXXXXXXXXXGSVVADNAGEGAGVDRQEGGSEKGAGEEAPALAVPEKQAAAGEAVASSPAAVSD-----KGDEERVGTPAEASDIASGSSGRXXXXXXXXXXXXXXXXXDASGEDATASIRAALESVSIYAEEEDACSAAATSAPVDAAXXXXXXXXXXXPASDVANVREVASTTAVKAPAPAPTPSRTAWESVRFSRPSGSSSGGGGRCSASVVSRHASLAAAVAETATMDADNYS------------------------------PS---GGTVPDARSGGVKSFSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKSVLGGVVERAPSVPAPMEVRVGGRARGGA-----GAVEGHLPKIEADLSFRVMPRGGYP--------GVGGGGGLGFAAGGQAGVEEAKDAREFGLGVDGGPLTADEFEDEKEMEEVXXXXXXXXXXXXXXXXXENDRAIWRETFGEEMPAEVSSGSWIDMDAVRDKEMREEFASSIAPFALLWSALSEWVSPETRAVCRAGRAAXXXXXXXXXXXXXPLSSAGKAKTSGVNGRSSSEIGDVAAEPASSPAITAASCCDVSEQSPRIDSSHSSSASPGHFGSVPADFLARKAGAVAEAIEAEMSRHAKRNRDRRKANPNDSPMKGTGDSSARGGGTTVGEGPTLTGALRHTGVSTMVNMHLALAERALIAAATTLHVRGGXXXXXXXXGCSGILQTSGQHNNMRSRKKWVWSDTAAGARQGARVP--GGWVEK--EGPTAAXXXXXXXXXXXXXXXXXXXXKAKEGTTGDDVPAVATASGTGTTVSGKHADAETNQRESPAISVAGRQTGKAPAAEPAAAAAAGEHVAGGGAECRRAVSAVIDTLNVAAGSASSATAADLSIAQWKVVSVVLLTAVGLGTGXXXXXXXXXXXXGAAAPRVTGEEAEVAAEACSRLCGEEMGVSAREFRILVDVMLEE 1149          
BLAST of mRNA_H-paniculata_contig636.14160.1 vs. uniprot
Match: D8LG47_ECTSI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG47_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.220e-64
Identity = 342/1107 (30.89%), Postives = 437/1107 (39.48%), Query Frame = 0
Query:    4 DIKRKIDSKIFELQSALLEEGV---TEALLHECTLWFRPNHLQDIVTERSEAEGICGWPGCRKSLPSWGLAAARVFD---GVESGRFCCKVCMSKTTVLLAAIPSTSPYSREGVLRVACPSMFEKPAGNSEHGATGDGAKKVYKRARRRDILPAKRAESTNGNRQKNNVGPSSRAITGACEAPIAGAVEDGRRERKEGETGAGREDDSMDLVRGGIARVSIANSDPVEEKQNEESSKPSLSTLIRPEVPSAVPVASSSVALVGGRPPGMEASAAAAAAGNVKSLGGAAVISKEHSSVTRSSDWGNVSFVPKSGPGSTVALHAMLAAAAAARPSLGVVEASXXXXXXXXXXXXXXXXXXXXXXXXVVVVTAPSQQQSESSPKIKPGGDQTRTTHESTTGSGVQQGKMSMVSLEPQSHSNKKGVSFAAGTKASPPDTAALTASLLPRRTGLGTGXXXXXXXXXXXXXXXXXXXXXGSTGKPKPMHQKPKAVLGAVMEKTPAVPIPM-MHTGSAGAGQSTGSEGGRVEGHLPRIQADLSFRVMPRGYEKDM--KQDDDNGDGDGDDMVRAAGCYKGG-EQENGEDSNDXXXXXXXXXXXXXXXXDRAIWRETFGEEMPTDVAEGPWIDMDAIHDKAMREEFATTIGAFPLLWDALSEWVTPATRAVCRAGRAAAAAGTCPSAVKLEN--LTTASVVTAEAETERDSSKPDKTAALGAPNECPCSSECKGRSEKLPPSTTVVSTDCDAG------VSMDVRKAATVAEAIEREARRHARGIGKAGKVGVS-----------VDGGGGEVSAGVTITGALRHSSISAMVNVHLPQAEQALRAAVVR---RGEEDRDTEGWQQSTSVQGKGARK--ANFRTFVWSNKKASPETTLMTPRAGLWVEAVADVPTAVVEQAHVRTERPAATCPEKNARYIG---------SGLVRTGVGVKLAGSTNG------VVKGRK--------------GGGVAAAGGTECRRAVATVIDTFDGA----RTAGAVNLSIAQWKIVPVVLLAVLGLGDGAVGDGG----------GRSGTDSSVCVAGDGVAGAEACAQICGPGVALSSREFELLMEVLLQD 1033
            ++KRKIDSKIF+LQS+LL E V    EALL EC  WF P HLQDIV ERSEAEG CGWPGC   LPSW LAA  VFD   G + GRFC + CM+                                                                            P+S A   A + P+           +   +G G E  +  L R     V +     +               ++ P  P+ VPV                                         S  R  D        +                   RP L                              +++   PS  +     K +      R   ++T                                  SP     +  +    R      XXXXXXXXXXXXXXXXXXXXX      KP     K+VLG V+E+ P+VP PM +  G    G +     G VEGHLP+I+ADLSFRVMPRG    +               +  A G  + G   + G  + D      XXXXXXXXXXD AIWRETFGEEMP +V+ G WIDMDA+ DK MREEFA++I  F LLW ALSEWV+P TRAVC+AGRAA                L +A          R  S+    AA  A +     + C   SE+ P   +  S+    G           RKA  VAEAIE E  RHA+      K   +             GGG  V  G T+TGALRH+ +S MVN+HL QAE+AL AA      RG          +S  +Q  G      + + ++WS+K          P   +  E       AV  +A      PA    + N    G         SG   T  G      TN        ++GR+               G   A GG ECRRAVA VIDT + A     +A A +LSIAQWK+V VVLL  +GLG GA+G             G +G ++ V         AEACA++CG  + +S+REF +L++V+L++
Sbjct:    8 EVKRKIDSKIFQLQSSLLAEDVGEIDEALLRECAAWFCPQHLQDIVIERSEAEGRCGWPGCGNKLPSWRLAAPLVFDLPEGEQLGRFCERSCMADP--------------------------------------------------------------------------PASTATVMAPQEPVP----------RRSTSGPGEE--TSPLPRSAYLLVVVLLLQQI---------------VLLPITPARVPV-----------------------------------------STARREDRRRAPVKKR-------------------RPLL-------------------------FQGSKLLMERPPSLPRPRFLTKAETTSAWERRQRQAT----------------------------------SPTAAVVVEKAWQQARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAAAARKSVLGGVVERAPSVPAPMEVRVGGRAQGGA-----GAVEGHLPKIEADLSFRVMPRGGYPGVGGXXXXXXXXXXXXXVEEAKGAREYGLGVDGGPLTADEVEDEKXXXXXXXXXXDGAIWRETFGEEMPAEVSSGSWIDMDAVRDKEMREEFASSIAPFALLWSALSEWVSPETRAVCQAGRAAXXXXXXXXXXXXXXSPLPSAGKAKTGGVNGRSLSEIGDVAAEPAGSPAITGASCCDVSEQGPRIDSSHSSSASPGHLGPVPADFQARKAGAVAEAIEAEMSRHAKRNRDRRKANANDSPNKGTGDSCARGGGATVGEGPTLTGALRHTGVSTMVNMHLAQAERALIAAAPTLHVRGGXXXXXXXXGRSGILQTSGQHNNVGSRKKWIWSDKATGARQGARVPGGWVEEEGATAAAAAVAAEAVPLKAPPAGGVCKANGETTGDDVPAVATASGTGTTARGENADAETNQRESSAVALEGRQTREAPAAEPAAAAAAGEHVAGGGAECRRAVAAVIDTLNAAVGSASSATAADLSIAQWKVVSVVLLTAVGLGAGAIGXXXXXXXXXXXAPGVTGEEAEVA--------AEACARLCGAEMGVSAREFRILVDVMLEE 881          
BLAST of mRNA_H-paniculata_contig636.14160.1 vs. uniprot
Match: A0A835YJQ0_9STRA (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.110e-6
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0
Query:  614 GPWIDMDAIHDKAMREEFATTIGAFPLLWDALSEWVTPATRA 655
            GPW+D+DA+HDK  REEF  ++ +F  LW AL+EWVTP TRA
Sbjct:  484 GPWLDLDALHDKRAREEFRASLSSFITLWGALAEWVTPETRA 525          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig636.14160.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2G0_9PHAE2.640e-8333.25RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
D8LG47_ECTSI1.220e-6430.89RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A835YJQ0_9STRA1.110e-661.90RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007308Rtr1/RPAP2 domainPFAMPF04181RPAP2_Rtr1coord: 36..98
e-value: 9.8E-7
score: 29.0
IPR007308Rtr1/RPAP2 domainPROSITEPS51479ZF_RTR1coord: 32..109
score: 12.077
IPR038534Rtr1/RPAP2 domain superfamilyGENE3D1.25.40.820coord: 4..132
e-value: 3.7E-8
score: 35.1
IPR039693Rtr1/RPAP2PANTHERPTHR14732UNCHARACTERIZEDcoord: 13..659

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig636contigH-paniculata_contig636:4809..10566 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig636.14160.1mRNA_H-paniculata_contig636.14160.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig636 4809..10654 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig636.14160.1 ID=prot_H-paniculata_contig636.14160.1|Name=mRNA_H-paniculata_contig636.14160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1034bp
MNHDIKRKIDSKIFELQSALLEEGVTEALLHECTLWFRPNHLQDIVTERS
EAEGICGWPGCRKSLPSWGLAAARVFDGVESGRFCCKVCMSKTTVLLAAI
PSTSPYSREGVLRVACPSMFEKPAGNSEHGATGDGAKKVYKRARRRDILP
AKRAESTNGNRQKNNVGPSSRAITGACEAPIAGAVEDGRRERKEGETGAG
REDDSMDLVRGGIARVSIANSDPVEEKQNEESSKPSLSTLIRPEVPSAVP
VASSSVALVGGRPPGMEASAAAAAAGNVKSLGGAAVISKEHSSVTRSSDW
GNVSFVPKSGPGSTVALHAMLAAAAAARPSLGVVEASSVASPALVAPTAA
SSAGPIVASPTVVVVTAPSQQQSESSPKIKPGGDQTRTTHESTTGSGVQQ
GKMSMVSLEPQSHSNKKGVSFAAGTKASPPDTAALTASLLPRRTGLGTGV
GSAGPGRGAGTRGRGRGNAKGSTGKPKPMHQKPKAVLGAVMEKTPAVPIP
MMHTGSAGAGQSTGSEGGRVEGHLPRIQADLSFRVMPRGYEKDMKQDDDN
GDGDGDDMVRAAGCYKGGEQENGEDSNDESEELGETDGEDDDENDRAIWR
ETFGEEMPTDVAEGPWIDMDAIHDKAMREEFATTIGAFPLLWDALSEWVT
PATRAVCRAGRAAAAAGTCPSAVKLENLTTASVVTAEAETERDSSKPDKT
AALGAPNECPCSSECKGRSEKLPPSTTVVSTDCDAGVSMDVRKAATVAEA
IEREARRHARGIGKAGKVGVSVDGGGGEVSAGVTITGALRHSSISAMVNV
HLPQAEQALRAAVVRRGEEDRDTEGWQQSTSVQGKGARKANFRTFVWSNK
KASPETTLMTPRAGLWVEAVADVPTAVVEQAHVRTERPAATCPEKNARYI
GSGLVRTGVGVKLAGSTNGVVKGRKGGGVAAAGGTECRRAVATVIDTFDG
ARTAGAVNLSIAQWKIVPVVLLAVLGLGDGAVGDGGGRSGTDSSVCVAGD
GVAGAEACAQICGPGVALSSREFELLMEVLLQD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007308Rtr1/RPAP2_dom
IPR038534Rtr1/RPAP2_sf
IPR039693Rtr1/RPAP2