Homology
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match:
A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)
HSP 1 Score: 130 bits (328), Expect = 4.900e-28
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 2
Query: 32 MGTEIVPVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRG--SKSLVLTLDGFALPPTENLDVLRETDVVSLEL 328
M T +P AVA PRRIRVVF ++ GC+P SN +LT+RW IPP L ++GDLAHHL RQ+ + GR S SLVLTLDGF LPPTE+LDVLRETDVV+L L
Sbjct: 54 MDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTL 154
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match:
A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS)
HSP 1 Score: 60.5 bits (145), Expect = 3.030e-6
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 2
Query: 50 PVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLE 325
P A P R+R+VF +T + R+ L + W L+ PEL V DL+ H+ + H +VLT+DGFALPP E+ + R+ D++ ++
Sbjct: 30 PPAXXPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHRSCPG-GVVLTMDGFALPPFESTCIFRDKDIIRVQ 119
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match:
A0A3B5ZYF5_WHEAT (Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A3B5ZYF5_WHEAT)
HSP 1 Score: 60.8 bits (146), Expect = 5.790e-6
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 2
Query: 50 PVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLE 325
P A + P R+R+VF +T + R+ L + W L+ PEL V DL+ H+ + H +VLT+DGFALPP E+ + R+ D++ ++
Sbjct: 4 PPAPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHRSCPG-GVVLTMDGFALPPFESTCIFRDKDIIRVQ 93
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match:
A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)
HSP 1 Score: 54.3 bits (129), Expect = 1.440e-5
Identity = 33/98 (33.67%), Postives = 54/98 (55.10%), Query Frame = 2
Query: 59 VAGPPR---RIRVVFSSETGCIPRS--NASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLELLDT 337
+A PP R+R+VF ++ + RS + L + W L+PPEL V DLA H+ + S ++L++DGF LPP E+ + R+ D++ + T
Sbjct: 1 MATPPAQAVRLRLVFDNQR-ILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRRSCPS-CVILSIDGFVLPPFESTCIFRDNDIIRQQFAHT 96
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match:
A0A8I6X8P6_HORVV (Coilin n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X8P6_HORVV)
HSP 1 Score: 58.9 bits (141), Expect = 2.330e-5
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 2
Query: 71 PRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLE 325
P R+R+VF +T + R+ L + W L+ PEL V DL+ H+ + H +VLT+DGFALPP E+ + R+ D++ ++
Sbjct: 11 PVRLRLVFD-KTRLLRRAQRDLRRCWVLLRPELATVADLSAHVATRFRLHRSCPG-GVVLTMDGFALPPFESTCIFRDKDIIRVK 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 4.90e-28 / Id = 64.36 Expect = 3.03e-6 / Id = 35.87 Expect = 5.79e-6 / Id = 35.87 Expect = 1.44e-5 / Id = 33.67 Expect = 2.33e-5 / Id = 36.47 Sequence A0A6H5L4H0_9PHAE A0A452ZID7_AEGTS A0A3B5ZYF5_WHEAT A0A0P0Y9A7_ORYSJ A0A8I6X8P6_HORVV back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12217.1412.1
>prot_H-paniculata_contig12217.1412.1 ID=prot_H-paniculata_contig12217.1412.1|Name=mRNA_H-paniculata_contig12217.1412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=518bp
MGTEIVPVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVG back to top mRNA from alignment at H-paniculata_contig12217:1643..6151+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12217.1412.1 ID=mRNA_H-paniculata_contig12217.1412.1|Name=mRNA_H-paniculata_contig12217.1412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4509bp|location=Sequence derived from alignment at H-paniculata_contig12217:1643..6151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)TCTACATTGGCACGCCTCAACCGCAGACGCC ATGGGTACCGAGATCGTGC
CCGTCGCGGTAGCCGGACCACCGCGTAGGATTCGAGTGGTATTTTCGTCG
GAGACTGGATGCATCCCGCGTTCCAACGCTAGCCTAACCCAACGATGGGC
TTTGATCCCACCTGAATTGAAGCTGGTGGGTGACCTGGCCCATCATCTAG
GTCGACAGGTGGCCAAGCACGCTGGGAGGGGGAGCAA GTGAGTAGGGGCG
GAGGCAGAGAGATCCAATTGGTTTTATGATGCATTGCATACCGAGATCTT
GTAGCTACTGTTGCCACTCTACTTTCGTTGGTGTTGTTTTTGCACGGGAG
CCAGTCACCTGAAGGAGCAAACGCAATGTAACAACTGTTTACAGTTTAGA
TTACGTAACGGTCGTGATTGCGTTGGTCGACAGTGATGGACGTTGATAGA
CATAAAACAACACATGAGATTATGGTACAAGACAGTACAGAAGTAAGCGA
CAGGCAACATTACAGTACAACAGATATCATGATCATTACTAGTATCCACA
CCTCTATCTGCAATGCTCTCATGTTCCTTCACCTATCAATAGAGCTAATT
ATTGATCGCATATGTCAGCTGCTTACCTTGTGTGTCGCACAGTATACTTC
TGGAGATTATAACAGTCCCCTAGTGTATTATTCTTCGCTCGAACTCCCTA
TGAAGGCAGCTGATATCTGCCGTAAAAGGGCCAGTCTTTTCTCAGTTTTA
TATACGATCACGGAGAGTACTGATTGTATCATAGTTGAACTCTTGCAGAC
CAGAAAGGCTGCGTTTCGACAAATTTCGACATGCGGTTTTTGACAGTCCC
GCGTCGAAAAAGGAGGGAGCGGCGTGGGCTTCGGTGCGGGGGAGTATGGA
AATTCGATGGACATAGTTGCTTTAACCGGGTTGAGATCAGACCCGTATGT
CGACAAACATATGACCATTAGAACATCGGGATCTCGACGAGTTTTGATAA
ACATGAATTTAGAATATCAGATGTCGACGCTAGGTGTAAAAGGGCATCAG
TCTTTTTGGCAATATTCACGTACCTCAAGGACTGGCTCAGCAGCCCGATC
GTCGTGTACTTGATGAAGTGGTGCAGCTGATGGACTGCAGTACAAAGATT
GGGTCCCTCGAGCGGTGACAGTCAGCTGCACAGCGCGAACAGCATGATGC
CGTATACTTGCGCGCAGCGACAAAAGATACAGACGGTATCGCTGCATGCA
GTGCACATGGTTGATGTACTGCTGCGTGCAGGACCATGTTTGCAACACCC
AAGAGCTGGCAGGCAACTAACTTCGTACTATCCAGAGATTTCTGTAGCGA
ACGAAATCGCGTTGCGTGTGTGGCGTCCTGTTATGAGTAACGGCACCCAC
AGGCACAGCAGCAGGTGGTTTGCCATAGTCAGTCATGGCAGTTCGGATAT
GATAACATGACTAATATCTATGGTAATTGGTGATGGGACATTGGGATTTC
TGGAACAAAGTCGTTGCTTTCAATCATATTTTTTTTCCAGACGTATGGGG
GTCAACACTCTGCAATGACACTGTTTTCTTTTTTCACCTGTAACGCGAGC
CATGTTTCGGAATAGAAACAGAGGTAATTGTTCAATCCCGTGCGACTGCG
GCCGGGGGGAGGGCAAAACAGAAATGACACATGCTCAGCATCTTCAAGCT
GTTGGATTCCTTTTCCACAAACTGACCAAGCTGAGGGTGCGGCGCATTTG
CAACGACGAGGGCCCAATCAAGGACCCTCGATAGACACAAGCCTCATCTC
GGAACATTTTTTTCCCCCTGACAGTAGAGCCCGATACCGCGTAGGGTGGC
GGGGAATATTCAATCAGGAACCCCAAATAGACCCTTACGCTGCAGAAGGG
GTACAATTTTCGCCTTCTACGTGAAGACAACAGCAGTTGGAATCGTGAGC
TAGTTGCCATTGCGAGGTGCAGTGTGGCCGGTGGAGGAACTCCGGACCGA
CTGCCGTGCACTCTGGTTTTGAGTCATGATAGCTCAGAGTTACAAATAGA
CAGGACAGCGTAGGTACCGCAGACAGTAGATGTGCACGGGTGATGGCAGA
ACATGTAGTATTCTAACTGTCTTGTACATTTGTCTGTGCTGTGTCGGTTC
GGTGTAGGTGTCCCAATCCTGGAAGCGTTCCAGCATCTCCTGAGAGAGCC
TGAGAGTTCGCCTATAATGCAACCATAGCCATAACCGACCGTATGTACAT
ACGTGGTGCGGGGTACCACTGTACTGTTGCAAGTGGAAGGAAAAGCGCAG
GCCAGCTGGGTTTACTGGGCGTGATAATCTGGATCATGACGATTGAAAAC
ACCGGAAAGGGGGTTCAACTGTCATGTCCTTGGGGTTTTGTATCGTGCAA
AACAACTAATCTCCCTCCTGGGAAGGATCCGTATTTTGTGCCTAAATGAA
CCCCTGGCGAGTCTGCGTACGTGAATCCTATCCTCTTAATTGTGAACAAT
ATCACCCCCCAGACAAATACGAAATCTTGCATATGGTTTTCACAAAAAAC
TGGAAATATTCGTCTGAGTTTCAGAATGAGCTCGTGTGTTTTATGTGCCC
CGGAACATCTACGACTGCTGACAATACTCGTAAATCGAACGGACAGGGGT
AGATATTTAATTCTGTGTGTCCGCTCCTTCTGAAACTCAGTCGAATATTT
TCAGTTTCTTGTGAAAATCAATATATAAGTATTCGCATTTGTTCGGGGGG
GTGAACAATTTCCCATCGCTCGAGATAAATAGATTTTGGAGTTTTGGTTG
ATGCTCGACGTGTACCTAGACAACGATATTACGACTCAAGAATATGAATC
TCACTTTTGGGGTTGGGTACATCTCATTTTCTTCTGTTTTTTTCTCCGGC
TGACCCGCCCCGACCCCATGGTTCAGGTCTCTGGTGCTCACCCTTGACGG
CTTCGCACTCCCTCCCACGGAAAACCTAGACGTGCTTCGAGAGACGGACG
TCGTTTCTCTCGAGTTACTCGATACCGGGACGTCCGATAGCGACGACGAC
GGTAACGGGGACAAGGATGATGGGGACGAAGACGACGACGATGACGATGA
TGATGCAGCGCGAGCTCTCCCCTCCACCGGCGGTCTCGGCAATGGCACAA
CAGCAGGAGGCAAGAGACGTGCCAGGTTGCTGACATCCGCCAGCAAAAAC
GCAGGCGCCGCGGGCAAAAAAGCGAAAAGGATGAAAACGTCGAACAAAAC
GCCGGACTCTACGCCGCGAGATGATCTAGCGTCCTCGTCGTCGGTCCCGA
AGAACGCCGCGCAAACCACACGCAATGGCGGTGGAGCCGGCGGCAGCGGC
AACGTGAGCGTCCCACCAGCTATGGACAATAAAAAAAGCAAGAAACGAAA
AGCCAAAGTTAAGCCCGATGCTCAGGCGGCGGGAACCGCAAATGCGACCG
GGCAACCCGCGGGGTCGAAACTGGCATTGAGCAACGGAAAGAAAAAAGAA
CGGCCAACAGGGGCAAAGGGGTCGAGCAAAATGATAGCCAAGCCCACCAA
GAAGTCGAAGACTATCAAGGAAGCGGCAGCGAAAAAGAAGGCGGGCGGCG
TTTGCTCTTCTTCACCGGCAGCAGTACCAGCGGTGGGTGCAACGGCTGCT
AGTTTGGGCACGGTTGATCCGGCTGGTAAAGGAGGACGTTCTTCCAAAAA
TAATCATGCCGCTTCTTCGTCAGAAGATGACGACGATGAATCTTCGGATT
CGTCGCGTTCGTCCGAGTCCGACTCTGAATCGGACTCTGATTCTGAAGAC
AGGTCTGCGGGTGGTACCGAGTCCAACAAACGTAGCCAGGGGGCATCGGC
AGCAGTATCGGCCGGAAAAGGAAAAATGGGCGATATTAAGAAAGGAGCAG
TGGTGAAAAGGAGCGCCTCTGCCTCCGCTGGCAGTGGTAAGGGTGGCAAG
AAGGGGGCGAGCGAACGAAAGGATGTGAGCAAGAATAAAGACAAAAAACG
GAAGAAGGGTGAGGGAAGCAACGGGGCAGCGGCGGGAGCAATAGTCACGG
CTGCCGCCCCTCCTAAAGTTACTACACCAGCTGCACCCAAGGCGGCGGCG
GACACGAAGACAAAAACTTCAGGTTCATCTTCTTCAGGTTCAT CTTCTTC
AAGTTCCTCCTCGTCCTCCTCGTCCTCCTCGTCCTCCTCTTCTTCTTCGA
GCTCATCAGAATCATCGTCCGATTCCGATTCTGAAACCGAAAAGAAGACA
ACAGCAGGGACAAGCAACGGCCGCGGCAGAGGCGCCACCGTGCGAGTGA A
TCCGCAAGCGTCTTCTCCCGCCTCGCGCGTTGGTGGCGGCGACGCCAGAA
CACAAGCGCAAATTGTGACAGCTACGCTGCGAGCTGCCGGGAGAGGTAGG
GGAGGACCAGGATCCCGCGGCGGCGGCGGTGGCGGCGGAGGCGGGCGCCA
TAACTGGGGGGGTCCTTTGGGACGCATCGTCGGTCAGCTACAACAGCACA
ACGTCTCAG back to top Coding sequence (CDS) from alignment at H-paniculata_contig12217:1643..6151+
>mRNA_H-paniculata_contig12217.1412.1 ID=mRNA_H-paniculata_contig12217.1412.1|Name=mRNA_H-paniculata_contig12217.1412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3108bp|location=Sequence derived from alignment at H-paniculata_contig12217:1643..6151+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top