prot_H-paniculata_contig12217.1412.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12217.1412.1
Unique Nameprot_H-paniculata_contig12217.1412.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length518
Homology
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.590e-28
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 0
Query:    1 MGTEIVPVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRG--SKSLVLTLDGFALPPTENLDVLRETDVVSLEL 99
            M T  +P AVA  PRRIRVVF ++ GC+P SN +LT+RW  IPP L ++GDLAHHL RQ+ +  GR   S SLVLTLDGF LPPTE+LDVLRETDVV+L L
Sbjct:   54 MDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTL 154          
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match: A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS)

HSP 1 Score: 60.1 bits (144), Expect = 3.260e-6
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 0
Query:    7 PVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLE 98
            P A    P R+R+VF  +T  + R+   L + W L+ PEL  V DL+ H+  +   H       +VLT+DGFALPP E+  + R+ D++ ++
Sbjct:   30 PPAXXPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHRSCPG-GVVLTMDGFALPPFESTCIFRDKDIIRVQ 119          
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match: A0A3B5ZYF5_WHEAT (Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A3B5ZYF5_WHEAT)

HSP 1 Score: 60.5 bits (145), Expect = 5.940e-6
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    7 PVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLE 98
            P A +  P R+R+VF  +T  + R+   L + W L+ PEL  V DL+ H+  +   H       +VLT+DGFALPP E+  + R+ D++ ++
Sbjct:    4 PPAPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHRSCPG-GVVLTMDGFALPPFESTCIFRDKDIIRVQ 93          
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 53.9 bits (128), Expect = 1.680e-5
Identity = 30/89 (33.71%), Postives = 50/89 (56.18%), Query Frame = 0
Query:   16 RIRVVFSSETGCIPRS--NASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLELLDT 102
            R+R+VF ++   + RS   + L + W L+PPEL  V DLA H+  +        S  ++L++DGF LPP E+  + R+ D++  +   T
Sbjct:   10 RLRLVFDNQR-ILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRRSCPS-CVILSIDGFVLPPFESTCIFRDNDIIRQQFAHT 96          
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Match: A0A8I6X8P6_HORVV (Coilin n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X8P6_HORVV)

HSP 1 Score: 58.9 bits (141), Expect = 1.830e-5
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   14 PRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVGDLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLE 98
            P R+R+VF  +T  + R+   L + W L+ PEL  V DL+ H+  +   H       +VLT+DGFALPP E+  + R+ D++ ++
Sbjct:   11 PVRLRLVFD-KTRLLRRAQRDLRRCWVLLRPELATVADLSAHVATRFRLHRSCPG-GVVLTMDGFALPPFESTCIFRDKDIIRVK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12217.1412.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L4H0_9PHAE2.590e-2864.36Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A452ZID7_AEGTS3.260e-635.87Coilin n=1 Tax=Aegilops tauschii subsp. strangulat... [more]
A0A3B5ZYF5_WHEAT5.940e-635.87Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A... [more]
A0A0P0Y9A7_ORYSJ1.680e-533.71Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
A0A8I6X8P6_HORVV1.830e-536.47Coilin n=2 Tax=Hordeum vulgare subsp. vulgare TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031722Coilin, N-terminal domainPFAMPF15862Coilin_Ncoord: 16..242
e-value: 6.1E-10
score: 39.0
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 16..231
NoneNo IPR availablePANTHERPTHR15197:SF0COILINcoord: 16..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12217contigH-paniculata_contig12217:1674..5941 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12217.1412.1mRNA_H-paniculata_contig12217.1412.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12217 1643..6151 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12217.1412.1 ID=prot_H-paniculata_contig12217.1412.1|Name=mRNA_H-paniculata_contig12217.1412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=518bp
MGTEIVPVAVAGPPRRIRVVFSSETGCIPRSNASLTQRWALIPPELKLVG
DLAHHLGRQVAKHAGRGSKSLVLTLDGFALPPTENLDVLRETDVVSLELL
DTGTSDSDDDGNGDKDDGDEDDDDDDDDAARALPSTGGLGNGTTAGGKRR
ARLLTSASKNAGAAGKKAKRMKTSNKTPDSTPRDDLASSSSVPKNAAQTT
RNGGGAGGSGNVSVPPAMDNKKSKKRKAKVKPDAQAAGTANATGQPAGSK
LALSNGKKKERPTGAKGSSKMIAKPTKKSKTIKEAAAKKKAGGVCSSSPA
AVPAVGATAASLGTVDPAGKGGRSSKNNHAASSSEDDDDESSDSSRSSES
DSESDSDSEDRSAGGTESNKRSQGASAAVSAGKGKMGDIKKGAVVKRSAS
ASAGSGKGGKKGASERKDVSKNKDKKRKKGEGSNGAAAGAIVTAAAPPKV
TTPAAPKAAADTKTKTSGSSSSGSSRPPRPPLLLRAHQNHRPIPILKPKR
RQQQGQATAAAEAPPCE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031722Coilin_N
IPR024822Coilin