mRNA_H-paniculata_contig632.14109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig632.14109.1
Unique NamemRNA_H-paniculata_contig632.14109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig632.14109.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 9.950e-43
Identity = 98/157 (62.42%), Postives = 111/157 (70.70%), Query Frame = 1 
Query:    4 DGKEYGSLVAERLVKLVRSESLESRDTLHRQLVVGAAPYLSHTAWYARVAAASCLESLARLECVGPEMTVCNPSSSQPLLESTKSESLVTTEGKLARGWVSLGDLRLKQVLQRGVLLLSRGSQQDEAVLSEQRASSLDVDTRVGQQRKRLLKCLGLA 474
            +G++YG LVAERLV+LVRSE LE RD LHRQLV GAA YL HTAWYARV+AA+CLESLARLE  G E     PS +            +T E  LARGWV LGD+RL +VL+RG LLLS G   D  V SE+   S DV TRVG+QRKRLLKCLGLA
Sbjct:   19 EGRQYGDLVAERLVELVRSEPLEGRDDLHRQLVAGAATYLCHTAWYARVSAAACLESLARLE-YGQE----EPSRAAVKXXXXXXXDALTDE--LARGWVGLGDVRLAEVLERGALLLSHGEDAD-VVDSERATPSADVGTRVGRQRKRLLKCLGLA 167
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BLAST of mRNA_H-paniculata_contig632.14109.1 vs. uniprot
Match: A0A6H5JCH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.930e-19
Identity = 55/91 (60.44%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   94 QLVVGAAPYLSHTAWYARVAAASCLESLARLECVGPEMTVCNPSSSQPLLESTKSESLVTTEGKLARGWVSLGDLRLKQVLQRGVLLLSRG 366
            QLV GAA YL HTAWYARV+AASCLESLARLE  G E     PS +    E       +T E  LARGWV LGD+RL +VL+RG LLLS G
Sbjct:    8 QLVAGAATYLCHTAWYARVSAASCLESLARLE-YGQE----EPSRAAKAKEGGGGGDALTDE--LARGWVGLGDVRLAEVLERGALLLSHG 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig632.14109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB5_ECTSI9.950e-4362.42Essential abundant protein involved in regulation ... [more]
A0A6H5JCH4_9PHAE2.930e-1960.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig632contigH-paniculata_contig632:4889..7142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D8LBB5
KEGG koko:K15192
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons4
Model size476
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig632.14109.1prot_H-paniculata_contig632.14109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig632 4889..7142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930727.8666306-CDS-H-paniculata_contig632:4888..49871622930727.8666306-CDS-H-paniculata_contig632:4888..4987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 4889..4987 -
1691481425.5505645-CDS-H-paniculata_contig632:4888..49871691481425.5505645-CDS-H-paniculata_contig632:4888..4987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 4889..4987 -
1622930727.8780737-CDS-H-paniculata_contig632:5520..57021622930727.8780737-CDS-H-paniculata_contig632:5520..5702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 5521..5702 -
1691481425.572721-CDS-H-paniculata_contig632:5520..57021691481425.572721-CDS-H-paniculata_contig632:5520..5702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 5521..5702 -
1622930727.8955913-CDS-H-paniculata_contig632:6353..64541622930727.8955913-CDS-H-paniculata_contig632:6353..6454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 6354..6454 -
1691481425.594507-CDS-H-paniculata_contig632:6353..64541691481425.594507-CDS-H-paniculata_contig632:6353..6454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 6354..6454 -
1622930727.9136264-CDS-H-paniculata_contig632:7050..71421622930727.9136264-CDS-H-paniculata_contig632:7050..7142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 7051..7142 -
1691481425.6046066-CDS-H-paniculata_contig632:7050..71421691481425.6046066-CDS-H-paniculata_contig632:7050..7142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 7051..7142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig632.14109.1

>prot_H-paniculata_contig632.14109.1 ID=prot_H-paniculata_contig632.14109.1|Name=mRNA_H-paniculata_contig632.14109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
LDGKEYGSLVAERLVKLVRSESLESRDTLHRQLVVGAAPYLSHTAWYARV
AAASCLESLARLECVGPEMTVCNPSSSQPLLESTKSESLVTTEGKLARGW
VSLGDLRLKQVLQRGVLLLSRGSQQDEAVLSEQRASSLDVDTRVGQQRKR
LLKCLGLA
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mRNA from alignment at H-paniculata_contig632:4889..7142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig632.14109.1 ID=mRNA_H-paniculata_contig632.14109.1|Name=mRNA_H-paniculata_contig632.14109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2254bp|location=Sequence derived from alignment at H-paniculata_contig632:4889..7142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGACGGGAAAGAATATGGCAGCCTCGTGGCCGAAAGGCTTGTCAAACT
GGTGCGGTCGGAGTCGCTGGAATCTCGAGACACGCTGCATAGGTAAGCCT
GTTCTACTTTGTAACATATACACTTTCACACTCGGTTCTGTGGTTTGATC
GTGTTTTGTATTCTTATTTTTAGTCTGCTGCATATGATTGTCTGAGTTAC
TTCGTCGCGGGTGCGAGGAGATGCTGGGGCCAATGATTGCATAGCACACC
GATGAGGTTGGCCACGGCGCATTCAAAATGCCGAGGCAACACGGGGTGGT
GGGCACTCTAGTATACAGATGTAGACCCTTTGCACGTCACATTGATGGTA
TGCATTTTTGCTTGTCGCGGGTAAGACGTTCACATCTCGCAGCAGGCGCG
CACATGACAAAACGATCGTTCATACCCGACGCCAACTTCGAATGTCAGGT
ATCGCGCTCGCAGGCAGCATGCACGCAATTAGGCGCCGTGCTTTAACTGG
TTCCGATTCTTCTGATGTAGCCGTGTGTTTTGCCTCCGCCACATATCGCG
ACGCATCAGTCCCATCGTTCCGACCCGCACCAGAGGATAGCTCTCGATTT
CACGAAAAACGTAACATACCCCACACATCACACACGAAGCTTCCTCCTCC
TTCCCCTGTATCCGCGACCGTCAACTGGTGGTTCGAAGGCAACTTGTTGT
GGGGGCAGCACCATACCTGTCTCACACGGCGTGGTACGCCCGCGTGGCAG
CAGCGTCTTGCCTGGAGAGCTTGGCACGCTTGGAATGCGGTAAGAAGAGA
CCATATCTATTAATGTTCTCGCCCTGCCATTTAATTACGATGTACTGTAC
AAAGTGCAATACTCCCAGTAGGCTCACTATCGTTCTATCATGACTCATCA
TTATTCACTGATTCATTTCGGAAAACAAGGTGCAATTATTTTGTCTCTGT
TGATTCTGTTGTCTCCACGAATGCGCAAGCACTGCCCCCGCCCCCCATGC
CTTCTCGCCTCCCACGATATCACAACCCTCCGGTTTGTTGTACAAGAGCA
ACGTACAAATAATGGTCAGCAGCTGGTACCAATATTGTGAAACGCAACCC
TGGGTCGGCGAAAAACCGGCGTTTAGCGCTGTCCCGGTATCATGAAAATG
CAAGGTCGATGGTGCTTCGTGTATCAGACTAAGGATGCGTCATCATAAGC
ACACCCTGCACAACACTCTGTTGCATCTTGCCACTCGTATTGTAGCCAAG
GTGCAATTTCAGTGCATCGCTACGAATACCCGCTTTAAAACTACAAAACC
GCGTTCTCAAGCTAGAAAATTAACGCTTGATCCCCCCCCAATACTGTGAT
TTAATATCCACTTGCATGTTTGTGCTCGGGACATTATATTGAGCTATGCG
CTGCACACCCCAGTTGTACCTACCCCCTCTCCGTGTGTAGTCGGTCCAGA
GATGACAGTGTGTAACCCGAGTTCAAGTCAGCCCTTGTTGGAATCGACAA
AAAGCGAGTCGTTGGTGACCACGGAGGGTAAGCTAGCTCGAGGTTGGGTG
TCCCTTGGAGATTTGAGGTTGAAGCAAGTGCTGCAGAGGGGTGTGCTTCT
TCTCAGCCGCGGTTCGCAGCAGGTGCTTTTTTGTTTCGCGTTATTTCGGG
CTTGTTTGTAATGCATGACCTAGTCTGGAGCTCTACACATCGTTGTCTCG
ATATCTTGATATTTTGATGTTGCTATCGGTCGGTCGGTACGCTGGGAGGT
TGGGAGGTCGTTCGTTGTGTTTCGAGACATGTTGTTTGTGCGGAAAATAT
TGAGAAATTGAGTATTCGAGAAGTTCTGCTTGTGTTCCATGCTTGTAATG
GTAATTTTGCGAAGACCAGCGAAACGCTTCCTTTGCGTAAGTTGGCGGAA
ATGAAACATCCTGTTTGCTTCCGTTCGGTTAGTTAGTACCAATGTTTTGA
ATACGGCAGCGGCACTGAGTACCACGTGCCAGCAGCACCACTACTGTGCA
CTCGACTCTCCGTATTTTCAATCTAAACACATCGCTTCACTTCACCTTTC
ATCTACCTGGAGTTTGGTACCAACAACGCTCCCCCCCAATTCGGATATAT
TTTGCTCTTCTCGTCGAAATGCCCATCGTATGCCTTATGCTCGCCCACAC
TGAAGGACGAAGCCGTGCTATCGGAGCAACGAGCCTCATCCTTAGATGTG
GATACCCGGGTGGGTCAACAGCGTAAACGGCTTCTCAAGTGCCTGGGCCT
GGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig632:4889..7142-

>mRNA_H-paniculata_contig632.14109.1 ID=mRNA_H-paniculata_contig632.14109.1|Name=mRNA_H-paniculata_contig632.14109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig632:4889..7142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGACGGGAAAGAATATGGCAGCCTCGTGGCCGAAAGGCTTGTCAAACT
GGTGCGGTCGGAGTCGCTGGAATCTCGAGACACGCTGCATAGCTAGACGG
GAAAGAATATGGCAGCCTCGTGGCCGAAAGGCTTGTCAAACTGGTGCGGT
CGGAGTCGCTGGAATCTCGAGACACGCTGCATAGGCAACTTGTTGTGGGG
GCAGCACCATACCTGTCTCACACGGCGTGGTACGCCCGCGTGGCAGCAGC
GTCTTGCCTGGAGAGCTTGGCACGCTTGGAATGCGGCAACTTGTTGTGGG
GGCAGCACCATACCTGTCTCACACGGCGTGGTACGCCCGCGTGGCAGCAG
CGTCTTGCCTGGAGAGCTTGGCACGCTTGGAATGCGTCGGTCCAGAGATG
ACAGTGTGTAACCCGAGTTCAAGTCAGCCCTTGTTGGAATCGACAAAAAG
CGAGTCGTTGGTGACCACGGAGGGTAAGCTAGCTCGAGGTTGGGTGTCCC
TTGGAGATTTGAGGTTGAAGCAAGTGCTGCAGAGGGGTGTGCTTCTTCTC
AGCCGCGGTTCGCAGCAGTCGGTCCAGAGATGACAGTGTGTAACCCGAGT
TCAAGTCAGCCCTTGTTGGAATCGACAAAAAGCGAGTCGTTGGTGACCAC
GGAGGGTAAGCTAGCTCGAGGTTGGGTGTCCCTTGGAGATTTGAGGTTGA
AGCAAGTGCTGCAGAGGGGTGTGCTTCTTCTCAGCCGCGGTTCGCAGCAG
GACGAAGCCGTGCTATCGGAGCAACGAGCCTCATCCTTAGATGTGGATAC
CCGGGTGGGTCAACAGCGTAAACGGCTTCTCAAGTGCCTGGGCCTGGCGG
ACGAAGCCGTGCTATCGGAGCAACGAGCCTCATCCTTAGATGTGGATACC
CGGGTGGGTCAACAGCGTAAACGGCTTCTCAAGTGCCTGGGCCTGGCG
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