mRNA_H-paniculata_contig62987.14072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.490e-13 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 222
KS +IV+ +A+YGLKQ+GR W + + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG C
Sbjct: 907 KSHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIMIYVDDILVAGSDEDC 979
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KSR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR8_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 3.590e-13 Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 222
KS +IV+ +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG C
Sbjct: 41 KSHKIVKAERALYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC 113
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JUF5_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF5_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 5.180e-13 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKS 213
KS +IV+ +A+YGLKQ+GR W + + LV N G Q K+DPCVFR N VV MI ++VDD++VAG
Sbjct: 215 KSHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVNKVVVMISMIYVDDILVAGSD 284
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 6.920e-13 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 222
KS ++V+ +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG C
Sbjct: 307 KSHKVVKAERAVYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDC 379
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 8.690e-13 Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 4 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAG 207
SG+IVRLNK++YGLKQA R + KRLV L+ +G QS SDPCV R V I+ +HVDD++ AG
Sbjct: 2 SGKIVRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 68
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 9.700e-13 Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 4 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 222
SG+IVRL +++YGLKQA R W K LV + +G Q +D CV RL + GVV M++ VHVDD+ GK +C
Sbjct: 741 SGKIVRLRRSLYGLKQASRTWHKHLVRGM-KCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRC 812
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.800e-12 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 222
KS +IV+ +A+YGLKQ+GR W + + LV N G Q K+DPCVF N VV +I+ ++VDD++VAG C
Sbjct: 470 KSHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDC 542
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.380e-12 Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 4 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 222
SG IV+LNK++YGLKQA R W LV L+ +G Q +D CVFRL + G V + L VHVDD+ G+ +C
Sbjct: 39 SGMIVKLNKSLYGLKQASRQWHSHLVRCLIC-LGFIQCLADTCVFRLIEEGRVVVTLAVHVDDIFSIGEEERC 110
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.720e-12 Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAG 207
KS +IV+ +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG
Sbjct: 41 KSHKIVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG 108
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 3.340e-12 Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 4 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAG 207
SG+IVRLNK++YGLKQA R + KRLV L+ +G QS SDPCV R V I+ +HVDD++ AG
Sbjct: 351 SGKIVRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62987.14072.1 >prot_H-paniculata_contig62987.14072.1 ID=prot_H-paniculata_contig62987.14072.1|Name=mRNA_H-paniculata_contig62987.14072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKback to top mRNA from alignment at H-paniculata_contig62987:3..226+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62987.14072.1 ID=mRNA_H-paniculata_contig62987.14072.1|Name=mRNA_H-paniculata_contig62987.14072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=224bp|location=Sequence derived from alignment at H-paniculata_contig62987:3..226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62987:3..226+ >mRNA_H-paniculata_contig62987.14072.1 ID=mRNA_H-paniculata_contig62987.14072.1|Name=mRNA_H-paniculata_contig62987.14072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig62987:3..226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |