prot_H-paniculata_contig62987.14072.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig62987.14072.1
Unique Nameprot_H-paniculata_contig62987.14072.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length74
Homology
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.490e-13
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0
Query:    1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 74
            KS +IV+  +A+YGLKQ+GR W   + + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C
Sbjct:  907 KSHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIMIYVDDILVAGSDEDC 979          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KSR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.590e-13
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 74
            KS +IV+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C
Sbjct:   41 KSHKIVKAERALYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC 113          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JUF5_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF5_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.180e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKS 71
            KS +IV+  +A+YGLKQ+GR W   + + LV N G  Q K+DPCVFR   N VV MI  ++VDD++VAG  
Sbjct:  215 KSHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVNKVVVMISMIYVDDILVAGSD 284          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.920e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 74
            KS ++V+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C
Sbjct:  307 KSHKVVKAERAVYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDC 379          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.690e-13
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    2 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAG 69
            SG+IVRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG
Sbjct:    2 SGKIVRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 68          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.700e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    2 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 74
            SG+IVRL +++YGLKQA R W K LV  +   +G  Q  +D CV RL + GVV M++ VHVDD+   GK  +C
Sbjct:  741 SGKIVRLRRSLYGLKQASRTWHKHLVRGM-KCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRC 812          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.800e-12
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 74
            KS +IV+  +A+YGLKQ+GR W   + + LV N G  Q K+DPCVF    N VV +I+ ++VDD++VAG    C
Sbjct:  470 KSHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDC 542          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.380e-12
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0
Query:    2 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAGKSVKC 74
            SG IV+LNK++YGLKQA R W   LV  L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +C
Sbjct:   39 SGMIVKLNKSLYGLKQASRQWHSHLVRCLIC-LGFIQCLADTCVFRLIEEGRVVVTLAVHVDDIFSIGEEERC 110          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.720e-12
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 0
Query:    1 KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAG 69
            KS +IV+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG
Sbjct:   41 KSHKIVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG 108          
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.340e-12
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    2 SGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILRVHVDDVIVAG 69
            SG+IVRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG
Sbjct:  351 SGKIVRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62987.14072.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1N9_9PHAE1.490e-1348.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSR8_9PHAE3.590e-1348.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUF5_9PHAE5.180e-1350.70C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMJ1_9PHAE6.920e-1347.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KS88_9PHAE8.690e-1354.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE9.700e-1349.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSK5_9PHAE1.800e-1247.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH88_9PHAE2.380e-1249.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLY3_9PHAE2.720e-1250.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE3.340e-1254.41Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..73
e-value: 5.8E-12
score: 45.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62987contigH-paniculata_contig62987:3..224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62987.14072.1mRNA_H-paniculata_contig62987.14072.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig62987 3..226 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig62987.14072.1 ID=prot_H-paniculata_contig62987.14072.1|Name=mRNA_H-paniculata_contig62987.14072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
KSGRIVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEK
NGVVDMILRVHVDDVIVAGKSVKC
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2