mRNA_H-paniculata_contig6288.14052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6288.14052.1
Unique NamemRNA_H-paniculata_contig6288.14052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6288.14052.1 vs. uniprot
Match: D8LSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ7_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 1.840e-60
Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 3 
Query:   96 SSTKWERSKQKGEMGYYFAHHTSMKELAPEDYRMNGPRLLSKSPT-APQNGKTADVPKVPASSPTPTPRRRAQMITSYAWEDYGEEVRLTFRQSGWDWSKVYEEEVGAEWGPRRFRLSIDSREYGLHTIDLPRLSGEVGDVKVLKLRSRLVVALVKGGR-GSYSRKTPWTELQSKSAPPN 629
            +S+KWE+SKQKG++GYYFAHH +MKELAPEDY+MNGP+LLSK  T +  NG   +                 Q I+SY+WEDYGEEVRLTFRQS W+W+KV  EE+  EWG RRFR+SIDSREYGLHTIDL RLSG V  V   KL++RLVVALVKGGR GSYS    W++LQ+    P+
Sbjct:   90 ASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSKGDTTSAPNGARPNGSXXXXXXXXXXXXXXPQQISSYSWEDYGEEVRLTFRQSEWEWAKVDVEEIEIEWGSRRFRMSIDSREYGLHTIDLQRLSGVVAGVTARKLKTRLVVALVKGGRRGSYSHSPAWSKLQAALEKPS 269
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BLAST of mRNA_H-paniculata_contig6288.14052.1 vs. uniprot
Match: A0A835Z330_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z330_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.930e-22
Identity = 67/180 (37.22%), Postives = 90/180 (50.00%), Query Frame = 3 
Query:   93 ESSTKWERSKQKGEMGYYFAHHTSMKE--LAPEDYRMNGPRLLSKSPTAPQNGKTADVPKVPASSPTPTPRRRAQMITSYAWEDYGEEVRLTFRQSGWDWSKVYEEEVGAEWGPRRFRLSIDSREYGLHTIDLPRLSGEVGDVKVLKLRSRLVVALVKGGRGSYSRKTPWTELQSKSAPP 626
            +  T WERSK K E+GYY AHH+ + +  +A  ++ MN P+ L                 V A  PT         ITSY +ED   EVRL FRQ GWDWS+V  +E+ A+W  R  RL+I+S +YG H      L GE+  V V K++  +   L+K   G+      W  LQ    PP
Sbjct:   95 DGRTPWERSKAKSELGYYQAHHSKLPDDGIASHEFEMNRPKPLGTR-------------IVTARPPT--------KITSYTYEDTFHEVRLDFRQEGWDWSQVPAQELSADWNGRSARLTINSTKYGAHVAAFTDLYGELAGVAVRKMKRSVRFVLMKKAPGA------WPALQGSPLPP 247
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BLAST of mRNA_H-paniculata_contig6288.14052.1 vs. uniprot
Match: A0A6H5L1W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.660e-15
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 3 
Query:   45 GWGVGSSLFGXXXXXKESSTKWERSKQKGEMGYYFAHHTSMKELAPEDYRMNGPRLLSK 221
            GWG  +S  G       +S+KWE+SKQKG++GYYFAHH +MKELAPEDY+MNGP+LLSK
Sbjct:   73 GWGSSASSTGQGDGPAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSK 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6288.14052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSJ7_ECTSI1.840e-6060.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z330_9STRA1.930e-2237.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L1W9_9PHAE1.660e-1564.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6288contigH-paniculata_contig6288:3169..7851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001900.1
Exons3
Model size1688
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6288.14052.1prot_H-paniculata_contig6288.14052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6288 4219..7717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930719.037854-UTR-H-paniculata_contig6288:3168..42181622930719.037854-UTR-H-paniculata_contig6288:3168..4218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6288 3169..4218 -
1691481421.2936265-UTR-H-paniculata_contig6288:3168..42181691481421.2936265-UTR-H-paniculata_contig6288:3168..4218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6288 3169..4218 -
1622930719.1376348-UTR-H-paniculata_contig6288:7717..78511622930719.1376348-UTR-H-paniculata_contig6288:7717..7851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6288 7718..7851 -
1691481421.3411338-UTR-H-paniculata_contig6288:7717..78511691481421.3411338-UTR-H-paniculata_contig6288:7717..7851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6288 7718..7851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930719.0539975-CDS-H-paniculata_contig6288:4218..43991622930719.0539975-CDS-H-paniculata_contig6288:4218..4399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6288 4219..4399 -
1691481421.3077297-CDS-H-paniculata_contig6288:4218..43991691481421.3077297-CDS-H-paniculata_contig6288:4218..4399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6288 4219..4399 -
1622930719.0934305-CDS-H-paniculata_contig6288:4973..51911622930719.0934305-CDS-H-paniculata_contig6288:4973..5191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6288 4974..5191 -
1691481421.3179975-CDS-H-paniculata_contig6288:4973..51911691481421.3179975-CDS-H-paniculata_contig6288:4973..5191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6288 4974..5191 -
1622930719.1208706-CDS-H-paniculata_contig6288:7612..77171622930719.1208706-CDS-H-paniculata_contig6288:7612..7717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6288 7613..7717 -
1691481421.3279314-CDS-H-paniculata_contig6288:7612..77171691481421.3279314-CDS-H-paniculata_contig6288:7612..7717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6288 7613..7717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6288.14052.1

>prot_H-paniculata_contig6288.14052.1 ID=prot_H-paniculata_contig6288.14052.1|Name=mRNA_H-paniculata_contig6288.14052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MGYYFAHHTSMKELAPEDYRMNGPRLLSKSPTAPQNGKTADVPKVPASSP
TPTPRRRAQMITSYAWEDYGEEVRLTFRQSGWDWSKVYEEEVGAEWGPRR
FRLSIDSREYGLHTIDLPRLSGEVGDVKVLKLRSRLVVALVKGGRGSYSR
KTPWTELQSKSAPPNGS*
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mRNA from alignment at H-paniculata_contig6288:3169..7851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6288.14052.1 ID=mRNA_H-paniculata_contig6288.14052.1|Name=mRNA_H-paniculata_contig6288.14052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4683bp|location=Sequence derived from alignment at H-paniculata_contig6288:3169..7851- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCCGACTCGAGCACGTCGACATCCTCGAGCGACAGCAACGCAGGTTGG
GGCGTAGGGTCATCGTTATTCGGAGGGGGCGGCGGTGGCAAGGAAAGCTC
GACGAAGTGGGAGCGAAGCAAGCAGAAGGGAGAGATGGGGTACTACTTCG
CTCACCACACTTCGATGAAGGAGCTTGCTCCAGAAGACTACCGCATGAAC
GGGCCGAGGTTGCTCAGCAAGAGCCCGACAGCACCGCAGGCAAGCACAAG
CTTTTTACGTTGGTTGAGTTACTCGTACTAATGCGTTGCATTCGCTCTTC
AATAAGGTCTACCTTACGTCATAGTGTGATTGGTTTTAGCAATAGCATGC
CCCGGATAGTCATTTCCCAAGAGATCAATATTTTTGCAGTTAGCACCAAG
GTTTTTCGCATGGGTTTCACGGTATTTAGTACCGTGGGAGTCGATAGCCA
CGGCCACAGGTAAGTTTTGCGGGAATTATTAGTGTATCTTGTGCGTACTG
CCAAATATGTCGAATAGCGTGGGATAGACCTATCGATCCTCCCCGTCCCC
CGGACAAATGGAAGTACAAAGGGCAAATACGCACGACGATTAGCTCGAAC
GAATACTGTATTCGTTGTGTCCCCGAACGCTATTTGTCTCAGGTGATACC
TTTGTATTCATTTTTCTATGAACAACTGAAACCTCTGGCGAATATTTCGT
TGGTCTGTTGAACATTTTTTTCTCACCCGAAAACTGTATTCATTGTACTC
TGCACAACTGGAGACTCAGGTGAATTGCCGTAGTTGTTCTGTCGTCGATT
ATAAGTTACGTATAGATGCAGTCGAGGTATTCACTCCGCGTGCGAAAAAC
AAGTCGAGATTTTTGCGAGCTTGGGCTTCGACAACGCTTGGTTTTTGGGC
TCTTTTGCTGAAAGAACTTGAGAAGTAATGTTTCCACCGTGGGCGTTTTC
TGTTTCTGAATGTGGGGTGGCGAGTGGTGTCTCACAGTGAGATTTAGTGA
CCGTTAGTAGCTGAGATACAGTGAACGAGAGGGCGAACGAGGACCATCAC
CTAGGAGATTGTTAAAGGGGCAGGTGTTCGGAAAGCCTGCACCGTTCTGG
AGAACTGTTCCTCAGGTAATTGCCACGGAAACACGCAGAATATTTGCGGA
ATTGTACCGTGTATTTCGAATCAAATACCTCAAATTTTTTAGTCAGAGCG
AGAGGTAATAACGTAAGAGCGCCACCCAAAATAACAAAATAACGACAAAA
TGTAATTTCCGTCCTTGTTACTGTCGGGTCTGACGCTTACATATGATAAA
AAAAATAAAAAGTATTTTGCGGGGTTGGGGCGGTAAGGTCACCGAAGTAA
ATTTACCGCAATAAAACCACGGTTACGGTAAAGTGTAGGCTAACACCGTG
GGAACAGTGAAATACTGTCCATCTACGGAGGTCGACATTTACCGTACCAT
AAATTACCGGAACTAGTCGTCACTGTACCGCTCGTTATCGCGCTGTTAGC
GGTGTTTTGCATTGTACCGTTTGGTTATTAAAAAAAGTTGTGTTCCTCTA
CCCTGCCCTTCTGGTTATCATGAAAAAAAGCATATTTCTGTAAGACCCCT
GGTTTTTTATTCCCTTTCGGTAAGCACTGTCCGAATAGGTGCCGCATGAG
AACACTATGCGATCACGTGTATTTCGTGGACGGGTGGCCAAATTAAGATG
TATTGTTCAAGCGTAGACTAAAGGTCTCTTCAGATGTAAGATGTCGGTAG
ATATCGTATTTTCAGCGGTTATGAGTGAGGGTGATGTAGCCCTCGTGAAA
TGTTTTTCCTCTCTTGTTGGGCTAACGACCAACGTCTGTCATATCTTGAA
CAGTGAAATGGAAACCCGATGTAGGATATTTGATGTAGGGGCCTAGGGTT
CACCTGTCACTGTCTGAAGATGAACTCTACATATCTCGGCTCGTTTGCTA
GGGTTCATCTGGTTCTGTGTCTAACTCAAGGATAAAATCGCAAGTAAGCA
TAGTGGTGTCAGCTAGCAATTCGTTGAAACGACACGGCGTGACGACAGAC
AGTACGCTGTGGCACTTGACTAAATGTCCCTTTCCGCGACGAAAATATGC
CACTCTTGCCTGATGTGCCAGCTTTTGTTCCGCCTGTCCGTTGCATGTAT
GCAGTTGCAAAGGGCATGCTTATCCCGCGAATGGATTATCACTTGAGGTA
ACCTAACGCTAGCGAATGTCGTGCGCGGGGGGCCGTACAATTTCTCCGCG
CCTTATGTGGTCTAATTTTGCCCTTGAGTCTACATGATTGAAATTTGAGG
TCAGCTGCATAATCTCAACATGAGTACGGTCGAGTTATTTTATGCATGAG
ACTTACAGATCCACTAATGTGGTGGGTGGGTTTGCTTGTAAGCCCCTCCC
CCCTTCTCCTTCATATATGGTACATCGTGAGCTGGGCTGCCACGTGTGAG
CATATGCGCCAACGAATGTCATTTTACTGTGCACAGTGTTACTCGCCCGA
CTTGGCCCAAATGCGACGAACATAGCGAGCATGGACGCGAGATTTTTCGT
TTATGCTTGTCTTCCCCGCGTTGAATGCGTCCCCTCTCTCTCCCTCATTG
CCTCTTGGTGGTTTAATTTTGCTGTTAAACGTAAACAACTCCCCCCCCCC
CTGCACACAGAACGGTAAGACAGCTGATGTACCTAAAGTGCCAGCCAGTT
CTCCGACCCCGACGCCACGACGTCGAGCACAGATGATAACATCGTACGCC
TGGGAAGATTACGGAGAAGAGGTGCGGTTGACCTTCCGGCAATCGGGATG
GGACTGGAGTAAGGTGTACGAGGAGGAGGTCGGCGCCGAGTGGGGACCGC
GAAGATTCCGCTTGTCCATCGACAGCAGGTGTGGGTGCGACTGGGTGCTT
CGGATCGCTTTCGATCGAAACAATTCACACAACATGGCTTTTCTCAAGGG
GCTTGGGTCATTGTGTCGTGGAGGAGAATGTGGCGGTCTGTGGGTGTGTT
GTTCTTGTTCTTGTTGTGGTTGCAGAATATCGCTGGGTGTATGTTTTATT
TCCAGAGTTGGTCTTGCCCCTTCACAATCGGGGAGCCCTATTTACGATCC
ATTTATTATGGTACCATTTTTTTGTTGATTTTGTTTGTCTTCTGGGATTT
TTCTCTGCCCCCCGGGAGCTGACTCTAACAAAGCTGAGGTATAGTGTAGT
CGAATGTTTAACTTAAGGCAATCGTCGCGTCAGAGTCGACGACGATGGTG
ACAACAGCGATCGCTAAATTTACCAGCTGCCAACAGTTCCAGCACAGTCT
TGGACTGTTGCTTCTTTATTTAATTATTTCATAATGCATGCGGAACACAG
CGCACTTTCACCCCTTTGCGCTCATCTCCATTGTTGGTGATATGTTCACC
TTTCGTCTTCAATATCTCATTCCCCACTGTGCCCACCTTTCCTGTCCCGC
AGAGAATATGGCCTTCACACTATCGACCTCCCGAGGCTAAGCGGCGAGGT
GGGGGACGTGAAAGTGCTCAAACTCCGCAGTCGATTGGTGGTGGCTCTGG
TCAAGGGCGGACGTGGGAGCTATAGTAGAAAGACTCCGTGGACAGAGTTG
CAGTCCAAGTCTGCCCCCCCAAATGGGAGTTGAGCGGTGGCGGTGGTGGC
GGGCTGTGCTCGCATGCAGGCATTGCCGGAGGTTGTCACCCGGGTCGGGG
GGGTTATTTAAGACATGGAAGGGCGATGAAAATTGACTTGTGGGAAAGCT
GGAGGCATATTTTCCCTCTCTTCCGCAGGGTGACTTGCCTTCAATCCGGG
GGCTCTACATGCTGCGTGTTGGCCTTGTTTACTGTTGAGTTTGATTTACT
TGTCGAATCTAGCTGTAGTGCCGATTGAAGTACCTGGTGATGAATGGATA
ACTGTGCTGAATGTCGACCGTCGCAGAGCACTCGGTGTACGTTCCGAGTA
GTGCCGTTACTATATTGTATTGTTCCCTAAATCCAAATAAAACCGGAGGT
AATTTGTTTACGCTTTTTATGCACACCCCCAATTGTTGCTTATCGCTTCA
TGAGGGTTCTGCAAGATCAAAATATTCATCTGTCCTTGCGCCATGGCTCA
TGGCCATCCATGCTATTTCCCTTTTGCCCTTTTCGAAGTTCTGCTTTTTG
CAATAGATGCTCTAGCGACTGCCGGCGTTTACGCTGCTGCCAAATGAGGG
GGCAGTAAACCCCCCAGGAATACCCCCCCACTTGTAGAGTGTGCCACCAT
TGGTTCAGCGTGGACCCAGTCCAGGTCGTCTATCAGACGGTAAAGGCAGC
ACTTTGGTTGGGGTTTCCAGTTATCTTCTCTCGGGTGTGCAACGCGTCAT
TAGTCGTGATATGCTGTGTATAGGCGTGAATGTTCATCGATATTGGTTCC
TTGATTTCTTCATGGTCATTCGATAGAACAGACCGGATAGGGTATATGGA
AAGAGACGGCGCACGTCGACATACGGTACATGATGGGAGGCTTCGCTACT
GTACGCACGTGGATGGATGAACGTACACATCGAGTATGGACAACGAGAAT
ATAATGAGTGGCGATGACATGACAATATTCGGGAACAGTAATGTTAATAG
TTTCTGTGTCTCGTAAGTCTGGGTTCTTACGGTATTTTGGAAATATCTTT
TGCAATTTGGGATTTATTAAAAAAATGCATCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig6288:3169..7851-

>mRNA_H-paniculata_contig6288.14052.1 ID=mRNA_H-paniculata_contig6288.14052.1|Name=mRNA_H-paniculata_contig6288.14052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig6288:3169..7851- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTACTACTTCGCTCACCACACTTCGATGAAGGAGCTTGCTCCAGA
AGACTACCGCATGAACGGGCCGAGGTTGCTCAGCAAGAGCCCGACAGCAC
CGCAGATGGGGTACTACTTCGCTCACCACACTTCGATGAAGGAGCTTGCT
CCAGAAGACTACCGCATGAACGGGCCGAGGTTGCTCAGCAAGAGCCCGAC
AGCACCGCAGAACGGTAAGACAGCTGATGTACCTAAAGTGCCAGCCAGTT
CTCCGACCCCGACGCCACGACGTCGAGCACAGATGATAACATCGTACGCC
TGGGAAGATTACGGAGAAGAGGTGCGGTTGACCTTCCGGCAATCGGGATG
GGACTGGAGTAAGGTGTACGAGGAGGAGGTCGGCGCCGAGTGGGGACCGC
GAAGATTCCGCTTGTCCATCGACAGCAGAACGGTAAGACAGCTGATGTAC
CTAAAGTGCCAGCCAGTTCTCCGACCCCGACGCCACGACGTCGAGCACAG
ATGATAACATCGTACGCCTGGGAAGATTACGGAGAAGAGGTGCGGTTGAC
CTTCCGGCAATCGGGATGGGACTGGAGTAAGGTGTACGAGGAGGAGGTCG
GCGCCGAGTGGGGACCGCGAAGATTCCGCTTGTCCATCGACAGCAGAGAA
TATGGCCTTCACACTATCGACCTCCCGAGGCTAAGCGGCGAGGTGGGGGA
CGTGAAAGTGCTCAAACTCCGCAGTCGATTGGTGGTGGCTCTGGTCAAGG
GCGGACGTGGGAGCTATAGTAGAAAGACTCCGTGGACAGAGTTGCAGTCC
AAGTCTGCCCCCCCAAATGGGAGTTGAAGAATATGGCCTTCACACTATCG
ACCTCCCGAGGCTAAGCGGCGAGGTGGGGGACGTGAAAGTGCTCAAACTC
CGCAGTCGATTGGTGGTGGCTCTGGTCAAGGGCGGACGTGGGAGCTATAG
TAGAAAGACTCCGTGGACAGAGTTGCAGTCCAAGTCTGCCCCCCCAAATG
GGAGTTGA
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