mRNA_H-paniculata_contig62815.14047.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62815.14047.1
Unique NamemRNA_H-paniculata_contig62815.14047.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62815.14047.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.240e-7
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 FLDVGWLAKVLEPVLNHKGVEQRGASHMFGDA-----ELTEPWHSHSLRRLTDDGILEQRLAQFLWP 186
            FLDV WLA++L+P+LNHK  E        GD       L +P    S  RL ++G+LE RLA  +WP
Sbjct:  507 FLDVVWLARILKPLLNHKDQEMFDGRVNLGDTGDTRITLDDPSDIASWDRLKNEGVLEPRLADAIWP 573
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BLAST of mRNA_H-paniculata_contig62815.14047.1 vs. uniprot
Match: A0A6H5KM56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM56_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.070e-6
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 FLDVGWLAKVLEPVLNHK------GVEQRGASHMFGDAELTEPWHSH--SLRRLTDDGILEQRLAQFLWP 186
            FLD  WLA++L+P LNHK      G+ + G +   GD  +T    S   SL RL D+G+LE RLA  +WP
Sbjct:  295 FLDFVWLARILKPFLNHKDQVTYDGLVRLGDT---GDVRITLHDQSDIASLDRLKDEGVLEPRLANAIWP 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62815.14047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L650_9PHAE2.240e-743.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM56_9PHAE5.070e-644.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62815contigH-paniculata_contig62815:612..802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930718.4363065-CDS-H-paniculata_contig62815:611..8001622930718.4363065-CDS-H-paniculata_contig62815:611..800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62815 612..800 +
1691481421.0176742-CDS-H-paniculata_contig62815:611..8001691481421.0176742-CDS-H-paniculata_contig62815:611..800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62815 612..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62815.14047.1prot_H-paniculata_contig62815.14047.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62815 612..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62815.14047.1

>prot_H-paniculata_contig62815.14047.1 ID=prot_H-paniculata_contig62815.14047.1|Name=mRNA_H-paniculata_contig62815.14047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
FLDVGWLAKVLEPVLNHKGVEQRGASHMFGDAELTEPWHSHSLRRLTDDG
ILEQRLAQFLWPR
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mRNA from alignment at H-paniculata_contig62815:612..802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62815.14047.1 ID=mRNA_H-paniculata_contig62815.14047.1|Name=mRNA_H-paniculata_contig62815.14047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=191bp|location=Sequence derived from alignment at H-paniculata_contig62815:612..802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTCGATGTGGGCTGGTTGGCGAAGGTGCTCGAGCCGGTGCTGAATCA
CAAGGGTGTTGAGCAGAGGGGTGCGTCGCATATGTTCGGAGATGCGGAGC
TGACGGAGCCGTGGCATAGTCACTCCCTACGGAGGCTAACAGACGATGGC
ATCCTGGAGCAGCGACTCGCTCAGTTTTTGTGGCCGCGCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig62815:612..802+

>mRNA_H-paniculata_contig62815.14047.1 ID=mRNA_H-paniculata_contig62815.14047.1|Name=mRNA_H-paniculata_contig62815.14047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig62815:612..802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTCGATGTGGGCTGGTTGGCGAAGGTGCTCGAGCCGGTGCTGAATCA
CAAGGGTGTTGAGCAGAGGGGTGCGTCGCATATGTTCGGAGATGCGGAGC
TGACGGAGCCGTGGCATAGTCACTCCCTACGGAGGCTAACAGACGATGGC
ATCCTGGAGCAGCGACTCGCTCAGTTTTTGTGGCCGCGCTTCCTCGATGT
GGGCTGGTTGGCGAAGGTGCTCGAGCCGGTGCTGAATCACAAGGGTGTTG
AGCAGAGGGGTGCGTCGCATATGTTCGGAGATGCGGAGCTGACGGAGCCG
TGGCATAGTCACTCCCTACGGAGGCTAACAGACGATGGCATCCTGGAGCA
GCGACTCGCTCAGTTTTTGTGGCCGCGC
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