mRNA_H-paniculata_contig6281.14046.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6281.14046.1
Unique NamemRNA_H-paniculata_contig6281.14046.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6281.14046.1 vs. uniprot
Match: R1CIT9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CIT9_EMIHU)

HSP 1 Score: 92.0 bits (227), Expect = 3.130e-22
Identity = 46/86 (53.49%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   16 PKGWSVVCNESVCVKGKYKPYNGRTAHERLAQAAGMPDPIVGASIKPDGKVELRSESVNNSNFGVCDASGTYAGETVRAQIEAGKV 273
            PK  +VVC+   CV G YKP    TAHERLA+AAGM  P V  SIKPDG+V LRSES+N +N   CDA+GT  G+    ++  G V
Sbjct:    3 PKSGTVVCDGEKCVIGNYKPTKDGTAHERLAKAAGMDKPKVAGSIKPDGRVALRSESINRTNGLGCDAAGTKLGQWAEMKMALGDV 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6281.14046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1CIT9_EMIHU3.130e-2253.49Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6281contigH-paniculata_contig6281:6613..6906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930718.3854473-CDS-H-paniculata_contig6281:6612..69061622930718.3854473-CDS-H-paniculata_contig6281:6612..6906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6281 6613..6906 +
1691481421.0072832-CDS-H-paniculata_contig6281:6612..69061691481421.0072832-CDS-H-paniculata_contig6281:6612..6906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6281 6613..6906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6281.14046.1prot_H-paniculata_contig6281.14046.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6281 6613..6906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6281.14046.1

>prot_H-paniculata_contig6281.14046.1 ID=prot_H-paniculata_contig6281.14046.1|Name=mRNA_H-paniculata_contig6281.14046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MSSARPKGWSVVCNESVCVKGKYKPYNGRTAHERLAQAAGMPDPIVGASI
KPDGKVELRSESVNNSNFGVCDASGTYAGETVRAQIEAGKVSCLRVV*
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mRNA from alignment at H-paniculata_contig6281:6613..6906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6281.14046.1 ID=mRNA_H-paniculata_contig6281.14046.1|Name=mRNA_H-paniculata_contig6281.14046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig6281:6613..6906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCTGCCAGGCCCAAAGGCTGGAGCGTGGTCTGCAATGAGAGCGT
CTGCGTGAAGGGCAAGTACAAGCCCTACAACGGGCGGACTGCGCACGAGC
GTCTTGCACAAGCTGCCGGCATGCCCGATCCTATCGTGGGGGCCTCGATC
AAGCCTGATGGGAAGGTTGAATTGCGTTCGGAAAGTGTAAACAACTCTAA
CTTCGGCGTCTGCGATGCGTCCGGCACCTACGCCGGGGAGACTGTGAGAG
CTCAAATAGAGGCAGGAAAGGTAAGCTGTTTGCGTGTTGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6281:6613..6906+

>mRNA_H-paniculata_contig6281.14046.1 ID=mRNA_H-paniculata_contig6281.14046.1|Name=mRNA_H-paniculata_contig6281.14046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig6281:6613..6906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCTGCCAGGCCCAAAGGCTGGAGCGTGGTCTGCAATGAGAGCGT
CTGCGTGAAGGGCAAGTACAAGCCCTACAACGGGCGGACTGCGCACGAGC
GTCTTGCACAAGCTGCCGGCATGCCCGATCCTATCGTGGGGGCCTCGATC
AAGCCTGATGGGAAGGTTGAATTGCGTTCGGAAAGTGTAAACAACTCTAA
CTTCGGCGTCTGCGATGCGTCCGGCACCTACGCCGGGGAGACTGTGAGAG
CTCAAATAGAGGCAGGAAAGGTAAGCTGTTTGCGTGTTGTGTGAATGTCC
TCTGCCAGGCCCAAAGGCTGGAGCGTGGTCTGCAATGAGAGCGTCTGCGT
GAAGGGCAAGTACAAGCCCTACAACGGGCGGACTGCGCACGAGCGTCTTG
CACAAGCTGCCGGCATGCCCGATCCTATCGTGGGGGCCTCGATCAAGCCT
GATGGGAAGGTTGAATTGCGTTCGGAAAGTGTAAACAACTCTAACTTCGG
CGTCTGCGATGCGTCCGGCACCTACGCCGGGGAGACTGTGAGAGCTCAAA
TAGAGGCAGGAAAGGTAAGCTGTTTGCGTGTTGTGTGA
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