mRNA_H-paniculata_contig6280.14044.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig6280.14044.1 vs. uniprot
Match: A0A6H5L5E6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E6_9PHAE) HSP 1 Score: 496 bits (1276), Expect = 1.080e-162 Identity = 302/494 (61.13%), Postives = 362/494 (73.28%), Query Frame = 1
Query: 19 QNSVGRHDAQERLEHFLGNPLRPSKQDLLDQGIYLDATPQELKMSHYLAARNVKHGLEGRETVQDLKNQGVYLSCGSNRAAHEKLLVKALLRRKLKHAFSQEELAQXXXXXXXXXXXXXXXXXXXXXXTSQLARLVSRRPHPDQLEREHPELLEAGILALVFEERVMPRFRGES-----------TGAEGGGGGSEQDGGPEHVVSFDALMTWPDVKDHMA-KGGLEEEEATAEMAQHFRLCDADSDGFLTFSQFLRWVELCDLNPEDHVQ---VFDRELETEFSLLIG-EGDSGVSLDAAASCRFVKRWVTSASLGREELEIMWG-----EGDAAEGKKNLEGFKKFCRQCETRSSAAHNVRLEDLQNCANIAEAKAKQALKSKLAARLSARPDLEELKKTRIYRLGGLDPATELLERNLIANDLKQQLLARPALEDLEKRGIKPNSARKASAARRDRSSSLLAAALDSTMRHDDAKWRMDPSTLGAGPRAEV 1437
Q+ + R ++RL L NPLRPSK+DL++ GIY+DATP+EL+M HYLA RN+KHGLE RE++QDLK+ GVY + S AAHEKLL+KALL+RKL HAFS+E XXXXXXXXXXXXXXXXXXXXXXT QLARLVS+RP P QLE+EHPEL++AG LALVFEERVMPR S G + G +E +GGPEH+VSFD L+TWPDV+DH+A +GG E+ EMA+HF LCD+D DG++TFSQFLRWVELCDL+P+DH+Q V D L+ E++ L G G G++LD A S VKRW SASL R+ LE MWG G A E K L+GFK FCR CE RSSAAH +R ++L A EAKAK+ L++K+AA+LSARPDL++LK++RIYR GGLDPA LERNLIA LK+QLLARPA+EDLEKRGIKP K R D +SS L ALDSTMRHDDA WR PS L AG R EV
Sbjct: 484 QHGLERQLIEQRLSRSLRNPLRPSKKDLVEHGIYIDATPRELQMEHYLATRNLKHGLERRESIQDLKDHGVYQAENSLSAAHEKLLIKALLQRKLSHAFSREXXXXXXXXXXXXXXXXXXXXXXXXXXTRQLARLVSKRPDPAQLEQEHPELMKAGTLALVFEERVMPRAAAGSXXXXXXXTVAEAGEKEGEVVAESEGGPEHLVSFDGLLTWPDVQDHLAGEGG---EDTKHEMARHFDLCDSDGDGYITFSQFLRWVELCDLDPDDHLQAGDVTDSNLDAEYARLEGASGKGGITLDQALSYPLVKRWAASASLDRDALEAMWGIGASEGGSAEENTKQLDGFKSFCRHCEARSSAAHQMRHKELLADAAKKEAKAKEDLRAKMAAKLSARPDLDKLKESRIYRSGGLDPAVVHLERNLIAISLKEQLLARPAIEDLEKRGIKPKDGTKV---RLDHNSSKLREALDSTMRHDDAVWRSHPSELVAGSRQEV 971
BLAST of mRNA_H-paniculata_contig6280.14044.1 vs. uniprot
Match: D8LIW6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW6_ECTSI) HSP 1 Score: 502 bits (1292), Expect = 8.420e-161 Identity = 305/491 (62.12%), Postives = 365/491 (74.34%), Query Frame = 1
Query: 19 QNSVGRHDAQERLEHFLGNPLRPSKQDLLDQGIYLDATPQELKMSHYLAARNVKHGLEGRETVQDLKNQGVYLSCGSNRAAHEKLLVKALLRRKLKHAFSQEELAQXXXXXXXXXXXXXXXXXXXXXXTSQLARLVSRRPHPDQLEREHPELLEAGILALVFEERVMPRFRGES-----------TGAEGGGGGSEQDGGPEHVVSFDALMTWPDVKDHMA-KGGLEEEEATAEMAQHFRLCDADSDGFLTFSQFLRWVELCDLNPEDHVQVFDRELETEFSLLIG-EGDSGVSLDAAASCRFVKRWVTSASLGREELEIMWG----EGDAAEGK-KNLEGFKKFCRQCETRSSAAHNVRLEDLQNCANIAEAKAKQALKSKLAARLSARPDLEELKKTRIYRLGGLDPATELLERNLIANDLKQQLLARPALEDLEKRGIKPNSARKASAARRDRSSSLLAAALDSTMRHDDAKWRMDPSTLGAGPRAEV 1437
Q+ + R ++RL L NPLRPSK+DL++ GIY+DATP+EL+M HYLA RN+KHGLE RE++QDLK+ GVY S RAAHEKLL+KALL+RKL HAFS+EE+ +XXXXXXXXXXXXXXXXXXXXXXT QLARLVS+RP P QLE+EHPEL++AG LALVFEERVMPR S G + G +E GGPEH+VSFD L+TWPDV+DH+ +GG E+ EMA+HF LCD+D DG++TFSQFLRWVELCDL+P+DH+QV D L+ E++ L G G GV+LD A S VKRWV SASL R+ L MWG EG +AEG K L+GFK FCR CE RSSAAH +R ++L A EAKAK+ L++ +AA+LSARPDL++LK++RIYR GGLDPA LERNLIA LK+QLLARPA+EDLEKRGIKP K R D +SS L ALDSTMRHDDA WR PS L AG R EV
Sbjct: 941 QHGLERQLIEKRLSRSLRNPLRPSKKDLVEHGIYIDATPRELQMEHYLATRNLKHGLERRESIQDLKDHGVYQPENSLRAAHEKLLIKALLQRKLSHAFSREEMDRXXXXXXXXXXXXXXXXXXXXXXTRQLARLVSKRPDPAQLEQEHPELMKAGTLALVFEERVMPRAAAGSXXXXXXXXXXEAGEKEGEVVAESGGGPEHLVSFDGLLTWPDVQDHLVGEGG---EDTKHEMARHFDLCDSDGDGYITFSQFLRWVELCDLDPDDHLQVTDSNLDAEYARLEGASGKWGVTLDQALSYPLVKRWVASASLDRDALNAMWGMGAGEGGSAEGNTKQLDGFKSFCRHCEARSSAAHQMRHKELLADAAKKEAKAKEDLRATMAAKLSARPDLDKLKESRIYRSGGLDPAMVHLERNLIAISLKEQLLARPAIEDLEKRGIKPKDGTKV---RLDHNSSKLREALDSTMRHDDAIWRSHPSELAAGSRQEV 1425
BLAST of mRNA_H-paniculata_contig6280.14044.1 vs. uniprot
Match: A0A835YKI0_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI0_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.060e-50 Identity = 170/513 (33.14%), Postives = 240/513 (46.78%), Query Frame = 1
Query: 175 VKHGLEGRETVQDLKNQGVYLSCGSNRAAHEKLLVKALLRRKLKHAFSQEELAQXXXXXXXXXXXXXXXXXXXXXXTSQLARLVSRRPHPDQLEREHPELL--------------EAGILALVFEERVMPRFRGESTGAEGGGGGSEQDGGPEHVVSFDALMTWPDVKDHMAKGGLEEEE----------------------------ATAEMAQH--FRLCDA----------------DSDGFLTFSQFLRWVELCDLNPEDHVQVFDRELETEFSLLI-----GEGDSGVSLDAAASCRF------------------------VKRWVTSASLGREELEIMWGEG---DAAEGKKNLEGFKKFCRQCETRSSAAHNVRLEDLQNCANIAEAKAKQALKSKLAARLSARPDLEELKKTRIYRLGGLDPATELLERNLIANDLKQQLLARPALEDLEKRGIKPNSARKASAARRDRSSSLLAAALDSTMRHDDAKWRMDPSTLGAGPRAEV 1437
VK GL R ++DL+ QG+YL + +AAHE+LL AL+ R L F+ XXXXXXXX +QL+RL+ RP + L+ EHP +L EA LAL F++R+ S A+ +SF+AL WP +++ + + L E AT + + F CDA D+DG +TFS+FLR+VELCD+NPE H++ D L F L GEG G + A +C + V+RW SA+L R+ L ++G DAA ++ GF FCR C+T ++ AH R++ +++ A+ A+ L+ L +L ARPD EL + I G PA LLERNLIAN +KQQLLARPAL++L ++GI S +AA+ +++ L L +MR DDA WR P+ LGAG R V
Sbjct: 1351 VKRGLLNRPDLEDLRAQGIYLDTTATQAAHERLLKGALIARGLSKHFNXXXXXXXXXXXXXXEQGGSRLRAEHSIIAAQLSRLMRARPDVEALQEEHPHILXXXXXXXXXXXXXXEANELALAFQDRLS------SPDAQ--------------TLSFEALRDWPALREALKEADLMHPEXXXXXXXMGSFDSCVTRLLAPRSRTLARATRKCYREGSFDACDAPVRACAPXXXXXXXXADADGAITFSEFLRFVELCDINPEAHIEADDDALAAAFQRLSTAAEGGEGGGGSRVSLAVACEYKRLSVAVDXXXXXXXXXXXXXXXLVQRWAASAALDRKALTELFGNAAGADAASPVQDQAGFVAFCRACQTAAAEAHAYRVQRMRSAASAEGEAARDTLRQTLVKKLQARPDYRELCERHIVL--GAAPAAALLERNLIANSIKQQLLARPALDELVRQGILLPSD---TAAQHADAAAQLEQRL--SMRKDDALWRARPAELGAGHRHAV 1836 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6280.14044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6280.14044.1 >prot_H-paniculata_contig6280.14044.1 ID=prot_H-paniculata_contig6280.14044.1|Name=mRNA_H-paniculata_contig6280.14044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=481bp QGTIQDQNSVGRHDAQERLEHFLGNPLRPSKQDLLDQGIYLDATPQELKMback to top mRNA from alignment at H-paniculata_contig6280:2298..12393+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6280.14044.1 ID=mRNA_H-paniculata_contig6280.14044.1|Name=mRNA_H-paniculata_contig6280.14044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10096bp|location=Sequence derived from alignment at H-paniculata_contig6280:2298..12393+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6280:2298..12393+ >mRNA_H-paniculata_contig6280.14044.1 ID=mRNA_H-paniculata_contig6280.14044.1|Name=mRNA_H-paniculata_contig6280.14044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2886bp|location=Sequence derived from alignment at H-paniculata_contig6280:2298..12393+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |