mRNA_H-paniculata_contig6277.14039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6277.14039.1
Unique NamemRNA_H-paniculata_contig6277.14039.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A6H5J939_9PHAE (RRM domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J939_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 7.840e-65
Identity = 153/226 (67.70%), Postives = 173/226 (76.55%), Query Frame = 1 
Query:    1 RAMLGEDVDHPEDSTQQQDVKGGSASPVADAA-----KELQAXXXXXXXXXXXXX--FEKAKQEIDGMDDPE-EEEKLDGLQQIISDSTSAAVAASSAVAD--------ASKTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXASAYYPVPSYPTYR 630
            RAMLGEDV+   D+T      G  A+   D A     K+L AXXXXXXXXXXXXX  FEKAKQEIDGM+DP+ EEEKL+GLQQIISDST+ A                 A+K+PDE+SVYVGQVDYDATP+ELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFAD DG+ENAL L+ S FKGR+LKVTPKRTN+PGL+ RGGR XXXXXXA  Y   P+YP++R
Sbjct:   12 RAMLGEDVETTADTT------GNGAAATGDGAAPAEGKDLAAXXXXXXXXXXXXXXXFEKAKQEIDGMEDPDDEEEKLEGLQQIISDSTAHAXXXXXXXXXXXXXXXXXAAKSPDESSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGSENALALDNSPFKGRNLKVTPKRTNVPGLSMRGGRGXXXXXXA--YSAEPAYPSFR 229
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1X2GEA8_9FUNG (RNA-binding domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GEA8_9FUNG)

HSP 1 Score: 144 bits (364), Expect = 3.900e-36
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:  286 KTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXASAYYPVPSY 618
            +T D  SVYVGQVDY A+P ELQ+HF++CGTINRVTILCDKF+G PKGYAYIEFA++    NA++L  S F+GR LKVTPKRTN+PG AARG  XXXXXX    Y P P Y
Sbjct:   74 ETIDSRSVYVGQVDYGASPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYIEFAESSFVNNAVSLNESLFRGRLLKVTPKRTNVPGFAARGXXXXXXXXAYGGYAPGPYY 184
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A7S3XQ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ96_HETAK)

HSP 1 Score: 140 bits (354), Expect = 9.530e-36
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:  295 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGL 549
            DETSVYVGQVDY+A+P ELQ+HF++CGTINRVTILCDKF+GRPKGYAY+EF + +  ENAL L  S FKGR LKVTPKR N+PG+
Sbjct:   37 DETSVYVGQVDYEASPEELQAHFQSCGTINRVTILCDKFTGRPKGYAYVEFLEKESVENALLLHDSLFKGRQLKVTPKRHNLPGM 121
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1X2ILT2_9FUNG (RRM domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ILT2_9FUNG)

HSP 1 Score: 141 bits (356), Expect = 3.550e-35
Identity = 77/117 (65.81%), Postives = 87/117 (74.36%), Query Frame = 1 
Query:  295 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXA--SAYYPVPSYPTYRGRG 639
            D  SVYVGQVDY ATP ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+     NA+ L  S F+GR LKVTPKRTN+PG A+RGG XXXXXXX     Y P P Y    G G
Sbjct:   74 DSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGGXXXXXXXXXFRGGYAPPPYYGHSAGYG 190
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A397VF04_9GLOM (RRM domain-containing protein n=4 Tax=Gigaspora TaxID=4873 RepID=A0A397VF04_9GLOM)

HSP 1 Score: 140 bits (353), Expect = 1.340e-34
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:  295 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLA-ARGGRXXXXXXXASAYYPVPSY--PTYRGRGR 642
            D  S+YVG VDY ATP +LQ+HF++CGTINRVTILCDKFSG PKGYAY+EFAD     NA+ L+ +  +GR +KVT KRTNIPG A  RGGR          +Y   +Y  PT+RGRGR
Sbjct:   80 DARSIYVGNVDYSATPEDLQNHFQSCGTINRVTILCDKFSGHPKGYAYVEFADPSSVANAMLLDNTVLRGRPIKVTAKRTNIPGYARGRGGRGTRASWRGG-FYGHGAYFAPTFRGRGR 197
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A163JZ81_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JZ81_ABSGL)

HSP 1 Score: 141 bits (355), Expect = 9.670e-34
Identity = 75/110 (68.18%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:  295 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXA--SAYYPVPSY 618
            D  SVYVGQVDY ATP ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+     NA+ L  S F+GR LKVTPKRTN+PG A+RGG XXXXXXX     Y P P Y
Sbjct:  176 DSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGGXXXXXXXXXFRGGYAPPPYY 285
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1Y2CJG4_9FUNG (RNA-binding domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CJG4_9FUNG)

HSP 1 Score: 137 bits (345), Expect = 1.140e-33
Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:  193 EEEEKLDGLQQIISDSTSAAVAASSAVADASKTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGG 564
            EE  KL  +Q+ +  +++A     +    A +  D  SVYVG VDY +TP ELQSHF++CGTINR+TILCDKF+G+PKG+AY+EFADA   E A+TL  S FKGR LKVTPKRTN+P    RGG
Sbjct:   28 EEAAKLKQMQEQVDQTSNAGATTDAEPITAKEDIDARSVYVGNVDYSSTPEELQSHFQSCGTINRITILCDKFTGQPKGFAYVEFADAANVETAITLNESLFKGRLLKVTPKRTNVPSFM-RGG 150
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1Y2GZW7_9FUNG (RRM domain-containing protein (Fragment) n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GZW7_9FUNG)

HSP 1 Score: 136 bits (342), Expect = 1.610e-33
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:  286 KTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARG-GRXXXXXXXASA-------YYPVPSY--PT-----YRGRG 639
            +T D  SVYVG VD+ +TP ELQSHF++CGTINR+TILCDK++G PKGYAY+EFAD     NA+ L  S F+ R +KVTPKRTN+PG+AARG GR XX      A       Y   P Y  PT     YRGRG
Sbjct:   39 ETVDSRSVYVGNVDWGSTPEELQSHFQSCGTINRITILCDKWTGHPKGYAYVEFADPSSVANAMVLNESLFRSRLIKVTPKRTNVPGMAARGRGRGXXAYRGGFAGHGAYGGYGQTPMYGAPTPYSGGYRGRG 171
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A7S2AZN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZN6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.640e-33
Identity = 74/139 (53.24%), Postives = 96/139 (69.06%), Query Frame = 1 
Query:  151 FEKAKQEIDGMDDPEEEEKLDGLQQIISDSTSAAVAASSAVADASKTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGR 567
             E  K+ +  M+  EE EKL  LQ+ ++   ++  A +SA A      D TS+YVGQVDY+A P+ELQ+HF +CGTINRVTILC+ F+G+P+GYAY+EFAD +  ENAL L  S FKGR LKV  KR N PG+  RGG+
Sbjct:   19 IEDMKRRVQEME--EEAEKLKELQESVAKEINSNTAPASAAAVGGSVED-TSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENALLLNDSIFKGRELKVAVKRVNFPGM--RGGK 152
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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: U9SZA1_RHIID (RRM domain-containing protein n=11 Tax=Eukaryota TaxID=2759 RepID=U9SZA1_RHIID)

HSP 1 Score: 137 bits (344), Expect = 1.710e-33
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 1 
Query:  295 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLA-ARGGRXXXXXXXASAYYPVPSY--PTYRGRGR 642
            D  S+YVG VDY ATP +LQ+HF++CGTINRVTILCDK+SG PKGYAY+EFAD     NA++L+ S  +GR++KVT KRTNIPG    RGGR          Y    +Y  PT+RGR R
Sbjct:   69 DARSIYVGNVDYAATPEDLQNHFQSCGTINRVTILCDKWSGHPKGYAYVEFADPSLVANAMSLDNSVLRGRAIKVTAKRTNIPGYTRGRGGRGARAAWRGGYYGHGSAYYSPTFRGRAR 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J939_9PHAE7.840e-6567.70RRM domain-containing protein (Fragment) n=2 Tax=E... [more]
A0A1X2GEA8_9FUNG3.900e-3667.57RNA-binding domain-containing protein n=1 Tax=Hess... [more]
A0A7S3XQ96_HETAK9.530e-3674.12Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1X2ILT2_9FUNG3.550e-3565.81RRM domain-containing protein n=1 Tax=Absidia repe... [more]
A0A397VF04_9GLOM1.340e-3458.82RRM domain-containing protein n=4 Tax=Gigaspora Ta... [more]
A0A163JZ81_ABSGL9.670e-3468.18Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1Y2CJG4_9FUNG1.140e-3356.45RNA-binding domain-containing protein n=1 Tax=Rhiz... [more]
A0A1Y2GZW7_9FUNG1.610e-3356.39RRM domain-containing protein (Fragment) n=1 Tax=L... [more]
A0A7S2AZN6_9STRA1.640e-3353.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
U9SZA1_RHIID1.710e-3357.14RRM domain-containing protein n=11 Tax=Eukaryota T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6277contigH-paniculata_contig6277:1248..6425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue2e-57
Seed eggNOG ortholog2880.D7FLM6
KEGG koko:K02884,ko:K09201,ko:K14396
KEGG Pathwayko03010,ko03015,ko05164,map03010,map03015,map05164
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000228,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005844,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016070,GO:0016071,GO:0016073,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0031090,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0034248,GO:0034518,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043621,GO:0043631,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045184,GO:0045292,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070717,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098588,GO:0098781,GO:0098787,GO:0098789,GO:0098805,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903311,GO:1903313,GO:1990251,GO:1990904,GO:2000112
EggNOG free text desc.positive regulation of polynucleotide adenylyltransferase activity
EggNOG OGsKOG4209@1,KOG4209@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-17_000570.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011,ko03019,ko03029,ko03036
Exons4
Model size1979
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6277.14039.1prot_H-paniculata_contig6277.14039.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6277 1254..5160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.2091157-UTR-H-paniculata_contig6277:1247..12531622930717.2091157-UTR-H-paniculata_contig6277:1247..1253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6277 1248..1253 +
1691481420.458153-UTR-H-paniculata_contig6277:1247..12531691481420.458153-UTR-H-paniculata_contig6277:1247..1253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6277 1248..1253 +
1622930717.2813754-UTR-H-paniculata_contig6277:5160..64251622930717.2813754-UTR-H-paniculata_contig6277:5160..6425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6277 5161..6425 +
1691481420.5129728-UTR-H-paniculata_contig6277:5160..64251691481420.5129728-UTR-H-paniculata_contig6277:5160..6425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6277 5161..6425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.2243145-CDS-H-paniculata_contig6277:1253..14181622930717.2243145-CDS-H-paniculata_contig6277:1253..1418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 1254..1418 +
1691481420.4724064-CDS-H-paniculata_contig6277:1253..14181691481420.4724064-CDS-H-paniculata_contig6277:1253..1418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 1254..1418 +
1622930717.235729-CDS-H-paniculata_contig6277:2798..29351622930717.235729-CDS-H-paniculata_contig6277:2798..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 2799..2935 +
1691481420.4820278-CDS-H-paniculata_contig6277:2798..29351691481420.4820278-CDS-H-paniculata_contig6277:2798..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 2799..2935 +
1622930717.2519135-CDS-H-paniculata_contig6277:4408..46161622930717.2519135-CDS-H-paniculata_contig6277:4408..4616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 4409..4616 +
1691481420.493259-CDS-H-paniculata_contig6277:4408..46161691481420.493259-CDS-H-paniculata_contig6277:4408..4616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 4409..4616 +
1622930717.2669015-CDS-H-paniculata_contig6277:4962..51601622930717.2669015-CDS-H-paniculata_contig6277:4962..5160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 4963..5160 +
1691481420.5042582-CDS-H-paniculata_contig6277:4962..51601691481420.5042582-CDS-H-paniculata_contig6277:4962..5160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6277 4963..5160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6277.14039.1

>prot_H-paniculata_contig6277.14039.1 ID=prot_H-paniculata_contig6277.14039.1|Name=mRNA_H-paniculata_contig6277.14039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MLGEDVDHPEDSTQQQDVKGGSASPVADAAKELQAAAAAAAAAEADDDFE
KAKQEIDGMDDPEEEEKLDGLQQIISDSTSAAVAASSAVADASKTPDETS
VYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADA
DGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRGRGRGRGASAYYP
VPSYPTYRGRGRGRGRGGYRGGYRGGYHAHTGGYY*
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mRNA from alignment at H-paniculata_contig6277:1248..6425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6277.14039.1 ID=mRNA_H-paniculata_contig6277.14039.1|Name=mRNA_H-paniculata_contig6277.14039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5178bp|location=Sequence derived from alignment at H-paniculata_contig6277:1248..6425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCAATGCTCGGAGAGGATGTTGATCATCCGGAGGATTCGACGCAGCA
GCAAGATGTTAAGGGTGGATCCGCGAGTCCTGTAGCGGACGCGGCGAAGG
AGCTTCAGGCGGCGGCGGCGGCAGCTGCAGCTGCCGAAGCTGACGATGAT
TTCGAGAAGGCAAAGCAGGAGGTACGACAAGAAAGGAGAGGTTTTCCGGC
AATATTTCATCATCACTTTTTTGTTCTCTTGTGTGTCAATGAACGTGTTC
GACAGACTTCTTCGATAATTTCAAAATTTGTGACCTGTTTTCGTCAGGAA
TCGTCTGAATCTTCGATATATATGTTTTCAAATTTAATTTCTTAAACTTG
GGGAGGAACGGCGTTAGGGTCAGAGTTAGAGTGACATGTGTTCCACCGGT
GTGGTTGCTGCAAGCACCTCAATGTAGTTTCGTGAGTTTCAATTGCCATT
TTCTTGTCCTTGTTTACCGCGCAGCCGGCGTTGCCTAATCGTGAAGTCAC
CGAGCTTGCATTGTTTTCGTGTTGTGGCGTTAAATACTGCTGGGTCTTTT
TCTAGATTTATGTCCCTATTCATAATATAATCGATTTCGAAGTGATTTTT
TCTTCACGTTTCAAACCATTTTAATTGTCCAAGGCTTTTCAATGTTTTTT
TTCCCTGGGCGGTTTGACCTCGATTAATTTTTGTGGAAATTATCGAAAAG
TCTTTCCGAGAGAACCACACCTCCGTTTTTGCCAGACCCTCAAACGGTCC
AAGCGAAAGTTCCCTCCATTTCCACCTGTTTTATTGGGGGGGCGAAAGTC
CCAAAGTCGTATATATTTTTAGCAAGACTTGCTGCACACATGTGGACGAT
CCCACCATCATGATAGCCAGTCACCACGCATCTCTCACACAGAAATGAAT
ACTGAATGTTTGTTACAGTTGTCACGCATCACGCGTTGCTACCGACACAG
CCAAGCTAGAGACACGATGCCGACGTAATCGTCGCGGGACTTCAGGTTTG
CAGGAGAAGCTAGAGTCCCTATCGCTGCCCAGTGATGGCGACCGTCAGCT
GCTCCTCTAAGGCTGTCCCATACTGCTGCCGTTGTTATGGATGATGGCTA
TAATGGTGATGAGTCTATAATCCATCCCGCCTAAACCGCCAAGCACACTT
GGCGAATCCGGCCGATTACATATTGCATGTATATGGTGTTTGAGAACCAC
AAGCCTACGTTGAAGCCTGCCCGCAACAGCAGTGAAGAGCAACCGGTGTA
CGTGAGCACGTCGTCGTGGTGGAACATAATGGCATTTGGATTTATTTCTC
GCCCATGAATTTTTTCCGTTTTTTTTCCGAGTAAAAATAACGACCAATAA
GAAGGAACACTTTTGAACAAACTCCGCCAATAACAAGTGGTCTTACGAAT
GAAAATCAACGCAACGGACCAAACCGAGCGTCATGGCTTCGATTTAGTTG
TCCGTTTTCTTTCACATATTTAAAATGTCAAATAATTGCCACGAAACTGA
TCGAGCATCCCTCCTTCGTTGGATTTTTTTTTTTTTGTTCACATGGAAAA
GATTGATGGCATGGATGACCCAGAGGAGGAGGAGAAATTGGACGGTCTGC
AGCAAATCATATCGGACTCGACCAGCGCGGCGGTTGCCGCTAGCTCCGCG
GTTGCGGACGCCTCAAAAACTCCCGACGAGACTTCTGTGTGAGTTTTTTG
CTGCACGTTTTTGTCCATTGTTTGATACGTTTCGCTGATTTACATAGCCT
ATAGCTCGCCACGCTTTTACGATCTTTAGCCGCCGCAAGAACCATTGTGT
ACTTGAGCATTTTACATGACCGGCATAGCACGTCTGTTTTCCCCAGGTCA
TGTGAGAAATATGCCCAGTTCGCGATCGGTCATATGTCATGTGGGAAAGT
CCCGGTCACATCAAGGTGTCGCACAGAGGGCAGGGCCTGAATCAACCCCC
CGACTTTTTTTGGCCTCTTCCCTCATTTATGTGCGTGTAGTTTCTGCTGG
GTGTGATCTGAAGGCCTTCTTGTACACTATGCAAGTGCTGCTGCATTTGA
ATAGCATATGCAACAGTTCAAAGCGTGCAATCAAGCTGCGGCACTACCTT
GACCGACAGATGTGTTTGCGTCACATGCTTGCCTCACATAATTCATCGTT
TGACTGCGCAGACCCGTACATGGTAAAGAGGAATCAAAACTAGGCTGTGG
ACACGCGTGCATGGATGTTCATCTGGTAGCTATTTCTAATATGTAATATT
AAAATCGGATAGTGGGGAGAACATCCATCCCCGTGCGTTCTGTTGCAAAT
TTATAGCCTATCTGTTTCTCTTCGTAAAGCCCCCGTGATGCCGCCAAGAT
CTCCAAGCTTCTCTCCGCCTCAACAAAGACACCCGCACGCGCCATCCACT
GGCATGATGTCCACCAAACATTGGCAAGGTTCGCTTTAGGCACTAACTCC
TTACTTGTCCCTTAAGTATGCTACTGTTTCACTCTCCTGCCGACGCTGCA
CTATTGCCACCTCCCCTCCGACATGCTGCTCCCACGACTTTTCCAGGATA
TGAACCCCCTCAAAGCTGCGTGGAGGCTCAGCACGATTTTGTTTTGTAGT
GGATAACAACTGATATCCCGCGAAGGGCTGGATTATGATTTAATGCAAAC
CTATTACGCTTGCCCTCCCTCAAATGCCCTTAGCGCACTTCTTGGTGTGT
GGCTCAAGCCCTGCCTTCCGTGTGACCCCTTGTTCATGTGAAAAGCCTTG
AAGAACATTCGATTATTTTGTCAGATTTGTTTTAGTCAATGGTATATACA
GATCAAATGAAGGGAAAAAATGGATTGACTATGTCATTGGCTGCACGCAA
ACCACCATTGGAAACAAGAACTAGGCAGCTAAAGCATGTTTTAGAAATAA
TTACATAAGCATCCAGTGAACGCCTGATACATCGTAATTGCGAGCTAATC
TTCCAAGTATTGGCAGACTAAACTCGTTACTCGTATGGTTCTCATCTTTT
TGCGATGTATTTGTTCGATGTACGTCATCCAGATCCATGCACGTGATGTA
GCTTTAAATGAGTATATATCAAAACTATTTGATCATTTCGTGTAGTCGTC
CGGGCAGTTGAAATCTTAACCCCACTGTTACAACACCACCCGGCATTCAC
TCCTAAAACAGATATGTGGGTCAGGTGGACTACGATGCCACCCCGAACGA
GCTTCAAAGTCATTTCGAAGCCTGCGGCACCATCAACCGCGTGACTATTC
TGTGCGATAAATTCTCCGGTCGCCCTAAGGGCTACGCATACATTGAGTTT
GCAGATGCAGACGGGGCCGAGAATGCCTTGACTCTAGAGGGGTCTACTTT
CAAGGGGCGCAGCTTGAAGGTGATTTCAACAGTGGATGATGGCAAACACG
GTTAAGGAACGCGGGTTTTTGTTATCTTTTTAATTTATTTATTTCGTGTA
GCTCAAAGAGCGTAAGACATTAGCATGTATGGAAGAGAGGACGAGAGAGA
GATCTTACAATGACCGTATTTCGGGTTTATTTTCGTATTTGAAAGAACGT
GTCCAGACATGGATGCAATTCTGGGCTTCTTTTTTTTTATGCGGCATCAC
CATAGAACACTAACCCCAAGTTAGATTTCACTGAGTCTACTTCATTGCGT
TCCCCCTCCCCCTCCCAGGGAAGTATTTATACCACAAAACATGCATATCT
GGTCCCTTTTTCCAGGTCACTCCGAAAAGAACGAACATCCCTGGGCTCGC
CGCACGAGGCGGTCGCGGACGTGGGCGAGGTCGTGGCGCCAGTGCATACT
ATCCGGTACCAAGCTACCCCACCTACCGTGGGCGGGGCCGGGGGAGGGGA
AGAGGGGGGTACCGAGGTGGATATCGGGGGGGATACCACGCCCACACCGG
CGGGTACTATTGAATATAGAGGGGGGTGGGGGGTACTCGGCAGTACGGCA
TATGCGCTCAGAGAGTAATGTTTGGAGAACGGCCTTTTGCATGCAAGAAA
AAGAACGGAGTCCTGAGAATCTTGTTACGCAGACTATTAGCAAACTTTGA
CCATATCGACGAAAACAATGGAGATGCAACGCGTGCAGATATATTTTAAT
GGTAGACGGGAGCGCACATCCCTTTGTAGCCAATTGATGTGAGATGCTGC
CCAGGGGGCGGGGTTGTGACGGAGGATATGAGGGTGTGCGCCGGACGCTT
TTGCATGCGTTTTGCCTGCGAGATGTGCCGTTTTCGGTAATGCTTTTCAC
GCGTTGATTCGCGCGGTAGCGCTGGACAGTCTGGTACTCGGGTTTTATTG
TTATAAATTCACCGAGACTCGACGTAATAGTTGAAGCGACGGAAAGGAGT
TAGACCTTGATGGTGTTGAGGTGGGTAGAGAGTTTTTCATTGCCGTGGAG
GCATCCAGCGGTTGGAGAAGGAGTCGGTCCGATTTGGTCCTAATCTGTCT
CACTAGGGCAGGTTGATTCCGTGAAAGGTTTTCGTTGGGGAGATGACTTA
GCCTCTCGGAAGTTGTATCTTGTGACCACAACCGTTGCGTGTTCGTCGTT
CTCTAATGCCAGTTTGAAGTTACTGAATTATTTCCCGGAAGGAAAGAGGC
CGGGCAGCTAAAGGCGCTAGTGCACACGTGGAGAGAGGAGAGTCAGGCTT
GTGTGCGGTGGAGAAAAGTGTAAGAGTTATGTTGTGGCCCTTGGTCTTGT
GTTTATGGAGCACAAGCCGGTCCTTGAGGATTTGTTGGAAGTCGTGCGGT
GAAATCGGGAAAGTAAACGCGAGGCGGGGAAAGAGCTCCAGGATGGTGCG
GCAGACGATAGTACGTAGTACTCTTGTTTTGTGGGCGGCAACTGGACTAC
AGCAGCTGGGTTTGCTCTGTCTCGGCGACGTACCAGTGTCGAACGGACAT
TATTCGAGAAACTTTTGAGCAGGATATCGACTACTTGGGCGGGCAGTTTG
GTATTGGTGAGAGAGAGAGGAGGGGGGGAGTGGGGGCGGGCGGGGGCAAC
AAGGATTGAGCCCTGCCTGGAAAGCTGAAGCTCCAAGATCACCTTCCATC
GTTTATTACGTCTGCTTGATCCAAACCTCGGTTTTTGCATGTTTTGTGCG
GGAACCAGGACTCGGCCCGGACGTATGAAGTCTTGTCTTGTCTCTCCGCG
GCCGTCATGGGTGTGCTCCGTCGTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig6277:1248..6425+

>mRNA_H-paniculata_contig6277.14039.1 ID=mRNA_H-paniculata_contig6277.14039.1|Name=mRNA_H-paniculata_contig6277.14039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig6277:1248..6425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGGAGAGGATGTTGATCATCCGGAGGATTCGACGCAGCAGCAAGA
TGTTAAGGGTGGATCCGCGAGTCCTGTAGCGGACGCGGCGAAGGAGCTTC
AGGCGGCGGCGGCGGCAGCTGCAGCTGCCGAAGCTGACGATGATTTCGAG
AAGGCAAAGCAGGAGATGCTCGGAGAGGATGTTGATCATCCGGAGGATTC
GACGCAGCAGCAAGATGTTAAGGGTGGATCCGCGAGTCCTGTAGCGGACG
CGGCGAAGGAGCTTCAGGCGGCGGCGGCGGCAGCTGCAGCTGCCGAAGCT
GACGATGATTTCGAGAAGGCAAAGCAGGAGATTGATGGCATGGATGACCC
AGAGGAGGAGGAGAAATTGGACGGTCTGCAGCAAATCATATCGGACTCGA
CCAGCGCGGCGGTTGCCGCTAGCTCCGCGGTTGCGGACGCCTCAAAAACT
CCCGACGAGACTTCTGTATTGATGGCATGGATGACCCAGAGGAGGAGGAG
AAATTGGACGGTCTGCAGCAAATCATATCGGACTCGACCAGCGCGGCGGT
TGCCGCTAGCTCCGCGGTTGCGGACGCCTCAAAAACTCCCGACGAGACTT
CTGTATATGTGGGTCAGGTGGACTACGATGCCACCCCGAACGAGCTTCAA
AGTCATTTCGAAGCCTGCGGCACCATCAACCGCGTGACTATTCTGTGCGA
TAAATTCTCCGGTCGCCCTAAGGGCTACGCATACATTGAGTTTGCAGATG
CAGACGGGGCCGAGAATGCCTTGACTCTAGAGGGGTCTACTTTCAAGGGG
CGCAGCTTGAAGATATGTGGGTCAGGTGGACTACGATGCCACCCCGAACG
AGCTTCAAAGTCATTTCGAAGCCTGCGGCACCATCAACCGCGTGACTATT
CTGTGCGATAAATTCTCCGGTCGCCCTAAGGGCTACGCATACATTGAGTT
TGCAGATGCAGACGGGGCCGAGAATGCCTTGACTCTAGAGGGGTCTACTT
TCAAGGGGCGCAGCTTGAAGGTCACTCCGAAAAGAACGAACATCCCTGGG
CTCGCCGCACGAGGCGGTCGCGGACGTGGGCGAGGTCGTGGCGCCAGTGC
ATACTATCCGGTACCAAGCTACCCCACCTACCGTGGGCGGGGCCGGGGGA
GGGGAAGAGGGGGGTACCGAGGTGGATATCGGGGGGGATACCACGCCCAC
ACCGGCGGGTACTATTGAGTCACTCCGAAAAGAACGAACATCCCTGGGCT
CGCCGCACGAGGCGGTCGCGGACGTGGGCGAGGTCGTGGCGCCAGTGCAT
ACTATCCGGTACCAAGCTACCCCACCTACCGTGGGCGGGGCCGGGGGAGG
GGAAGAGGGGGGTACCGAGGTGGATATCGGGGGGGATACCACGCCCACAC
CGGCGGGTACTATTGA
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