prot_H-paniculata_contig6277.14039.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig6277.14039.1
Unique Name	prot_H-paniculata_contig6277.14039.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	236

Homology

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A6H5J939_9PHAE (RRM domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J939_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.560e-68
Identity = 151/224 (67.41%), Postives = 171/224 (76.34%), Query Frame = 0

Query:    1 MLGEDVDHPEDSTQQQDVKGGSASPVADAA-----KELQAXXXXXXXXXXXXX--FEKAKQEIDGMDDPE-EEEKLDGLQQIISDSTSAAVAASSAVAD--------ASKTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXASAYYPVPSYPTYR 208
            MLGEDV+   D+T      G  A+   D A     K+L AXXXXXXXXXXXXX  FEKAKQEIDGM+DP+ EEEKL+GLQQIISDST+ A                 A+K+PDE+SVYVGQVDYDATP+ELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFAD DG+ENAL L+ S FKGR+LKVTPKRTN+PGL+ RGGR XXXXXXA  Y   P+YP++R
Sbjct:   14 MLGEDVETTADTT------GNGAAATGDGAAPAEGKDLAAXXXXXXXXXXXXXXXFEKAKQEIDGMEDPDDEEEKLEGLQQIISDSTAHAXXXXXXXXXXXXXXXXXAAKSPDESSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGSENALALDNSPFKGRNLKVTPKRTNVPGLSMRGGRGXXXXXXA--YSAEPAYPSFR 229

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1X2GEA8_9FUNG (RNA-binding domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GEA8_9FUNG)

HSP 1 Score: 144 bits (364), Expect = 1.400e-39
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 0

Query:   94 KTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXASAYYPVPSY 204
            +T D  SVYVGQVDY A+P ELQ+HF++CGTINRVTILCDKF+G PKGYAYIEFA++    NA++L  S F+GR LKVTPKRTN+PG AARG  XXXXXX    Y P P Y
Sbjct:   74 ETIDSRSVYVGQVDYGASPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYIEFAESSFVNNAVSLNESLFRGRLLKVTPKRTNVPGFAARGXXXXXXXXAYGGYAPGPYY 184

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A7S3XQ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ96_HETAK)

HSP 1 Score: 140 bits (354), Expect = 4.520e-39
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = 0

Query:   97 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGL 181
            DETSVYVGQVDY+A+P ELQ+HF++CGTINRVTILCDKF+GRPKGYAY+EF + +  ENAL L  S FKGR LKVTPKR N+PG+
Sbjct:   37 DETSVYVGQVDYEASPEELQAHFQSCGTINRVTILCDKFTGRPKGYAYVEFLEKESVENALLLHDSLFKGRQLKVTPKRHNLPGM 121

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1X2ILT2_9FUNG (RRM domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ILT2_9FUNG)

HSP 1 Score: 141 bits (356), Expect = 1.580e-38
Identity = 77/117 (65.81%), Postives = 87/117 (74.36%), Query Frame = 0

Query:   97 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXA--SAYYPVPSYPTYRGRG 211
            D  SVYVGQVDY ATP ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+     NA+ L  S F+GR LKVTPKRTN+PG A+RGG XXXXXXX     Y P P Y    G G
Sbjct:   74 DSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGGXXXXXXXXXFRGGYAPPPYYGHSAGYG 190

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A397VF04_9GLOM (RRM domain-containing protein n=4 Tax=Gigaspora TaxID=4873 RepID=A0A397VF04_9GLOM)

HSP 1 Score: 140 bits (353), Expect = 6.440e-38
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 0

Query:   97 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLA-ARGGRXXXXXXXASAYYPVPSY--PTYRGRGR 212
            D  S+YVG VDY ATP +LQ+HF++CGTINRVTILCDKFSG PKGYAY+EFAD     NA+ L+ +  +GR +KVT KRTNIPG A  RGGR          +Y   +Y  PT+RGRGR
Sbjct:   80 DARSIYVGNVDYSATPEDLQNHFQSCGTINRVTILCDKFSGHPKGYAYVEFADPSSVANAMLLDNTVLRGRPIKVTAKRTNIPGYARGRGGRGTRASWRGG-FYGHGAYFAPTFRGRGR 197

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A163JZ81_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JZ81_ABSGL)

HSP 1 Score: 141 bits (355), Expect = 4.300e-37
Identity = 75/110 (68.18%), Postives = 85/110 (77.27%), Query Frame = 0

Query:   97 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRXXXXXXXA--SAYYPVPSY 204
            D  SVYVGQVDY ATP ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+     NA+ L  S F+GR LKVTPKRTN+PG A+RGG XXXXXXX     Y P P Y
Sbjct:  176 DSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGGXXXXXXXXXFRGGYAPPPYY 285

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1Y2CJG4_9FUNG (RNA-binding domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CJG4_9FUNG)

HSP 1 Score: 137 bits (345), Expect = 6.840e-37
Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 0

Query:   63 EEEEKLDGLQQIISDSTSAAVAASSAVADASKTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGG 186
            EE  KL  +Q+ +  +++A     +    A +  D  SVYVG VDY +TP ELQSHF++CGTINR+TILCDKF+G+PKG+AY+EFADA   E A+TL  S FKGR LKVTPKRTN+P    RGG
Sbjct:   28 EEAAKLKQMQEQVDQTSNAGATTDAEPITAKEDIDARSVYVGNVDYSSTPEELQSHFQSCGTINRITILCDKFTGQPKGFAYVEFADAANVETAITLNESLFKGRLLKVTPKRTNVPSFM-RGG 150

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A1Y2GZW7_9FUNG (RRM domain-containing protein (Fragment) n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GZW7_9FUNG)

HSP 1 Score: 136 bits (342), Expect = 1.050e-36
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 0

Query:   94 KTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARG-GRXXXXXXXASA-------YYPVPSY--PT-----YRGRG 211
            +T D  SVYVG VD+ +TP ELQSHF++CGTINR+TILCDK++G PKGYAY+EFAD     NA+ L  S F+ R +KVTPKRTN+PG+AARG GR XX      A       Y   P Y  PT     YRGRG
Sbjct:   39 ETVDSRSVYVGNVDWGSTPEELQSHFQSCGTINRITILCDKWTGHPKGYAYVEFADPSSVANAMVLNESLFRSRLIKVTPKRTNVPGMAARGRGRGXXAYRGGFAGHGAYGGYGQTPMYGAPTPYSGGYRGRG 171

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: U9SZA1_RHIID (RRM domain-containing protein n=11 Tax=Eukaryota TaxID=2759 RepID=U9SZA1_RHIID)

HSP 1 Score: 137 bits (344), Expect = 1.050e-36
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 0

Query:   97 DETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLA-ARGGRXXXXXXXASAYYPVPSY--PTYRGRGR 212
            D  S+YVG VDY ATP +LQ+HF++CGTINRVTILCDK+SG PKGYAY+EFAD     NA++L+ S  +GR++KVT KRTNIPG    RGGR          Y    +Y  PT+RGR R
Sbjct:   69 DARSIYVGNVDYAATPEDLQNHFQSCGTINRVTILCDKWSGHPKGYAYVEFADPSLVANAMSLDNSVLRGRAIKVTAKRTNIPGYTRGRGGRGARAAWRGGYYGHGSAYYSPTFRGRAR 187

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BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Match: A0A7S2AZN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZN6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.110e-36
Identity = 74/139 (53.24%), Postives = 96/139 (69.06%), Query Frame = 0

Query:   49 FEKAKQEIDGMDDPEEEEKLDGLQQIISDSTSAAVAASSAVADASKTPDETSVYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADADGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGR 187
             E  K+ +  M+  EE EKL  LQ+ ++   ++  A +SA A      D TS+YVGQVDY+A P+ELQ+HF +CGTINRVTILC+ F+G+P+GYAY+EFAD +  ENAL L  S FKGR LKV  KR N PG+  RGG+
Sbjct:   19 IEDMKRRVQEME--EEAEKLKELQESVAKEINSNTAPASAAAVGGSVED-TSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENALLLNDSIFKGRELKVAVKRVNFPGM--RGGK 152

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig6277.14039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J939_9PHAE	1.560e-68	67.41	RRM domain-containing protein (Fragment) n=2 Tax=E...	[more]
A0A1X2GEA8_9FUNG	1.400e-39	67.57	RNA-binding domain-containing protein n=1 Tax=Hess...	[more]
A0A7S3XQ96_HETAK	4.520e-39	74.12	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A1X2ILT2_9FUNG	1.580e-38	65.81	RRM domain-containing protein n=1 Tax=Absidia repe...	[more]
A0A397VF04_9GLOM	6.440e-38	58.82	RRM domain-containing protein n=4 Tax=Gigaspora Ta...	[more]
A0A163JZ81_ABSGL	4.300e-37	68.18	Uncharacterized protein n=1 Tax=Absidia glauca Tax...	[more]
A0A1Y2CJG4_9FUNG	6.840e-37	56.45	RNA-binding domain-containing protein n=1 Tax=Rhiz...	[more]
A0A1Y2GZW7_9FUNG	1.050e-36	56.39	RRM domain-containing protein (Fragment) n=1 Tax=L...	[more]
U9SZA1_RHIID	1.050e-36	57.14	RRM domain-containing protein n=11 Tax=Eukaryota T...	[more]
A0A7S2AZN6_9STRA	1.110e-36	53.24	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..55
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 13..212
None	No IPR available	PANTHER	PTHR23236:SF39	POLYADENYLATE-BINDING PROTEIN 1	coord: 13..212
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 100..172 e-value: 8.7E-22 score: 88.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 101..170 e-value: 7.1E-17 score: 61.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 99..176 score: 17.131
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..179 e-value: 3.8E-26 score: 93.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 88..195

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig6277	contig	H-paniculata_contig6277:1254..5160 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig6277.14039.1	mRNA_H-paniculata_contig6277.14039.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig6277 1248..6425 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig6277.14039.1 ID=prot_H-paniculata_contig6277.14039.1|Name=mRNA_H-paniculata_contig6277.14039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MLGEDVDHPEDSTQQQDVKGGSASPVADAAKELQAAAAAAAAAEADDDFE
KAKQEIDGMDDPEEEEKLDGLQQIISDSTSAAVAASSAVADASKTPDETS
VYVGQVDYDATPNELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADA
DGAENALTLEGSTFKGRSLKVTPKRTNIPGLAARGGRGRGRGRGASAYYP
VPSYPTYRGRGRGRGRGGYRGGYRGGYHAHTGGYY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf