mRNA_H-paniculata_contig6274.14038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A6A3IVK9_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IVK9_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.860e-11 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVI 204
LS+ D P T EEK++M KF YREA+G +++ TRPD+A +R V+R+ +NPGP H V+
Sbjct: 112 LSESDFPQTEEEKQNMEKFPYREAVGSFMYLMMGTRPDLANFIRQVSRYLQNPGPHHWNYVV 173
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE) HSP 1 Score: 66.6 bits (161), Expect = 3.570e-11 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
LSK P TP+E E+M + Y A+G LL++ATMTRPDIA +ARF+ NPG H K V ++
Sbjct: 366 LSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVL 430
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC) HSP 1 Score: 63.5 bits (153), Expect = 4.400e-10 Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 37 PTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEI 210
P T EKE+M YREA+G L W+A MTRPDIA V +RF +NPG H K+V I
Sbjct: 657 PKTQAEKEEMKDIPYREAVGNLQWLANMTRPDIAQAVGVASRFCQNPGVQHWKLVKRI 714
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A4Y9ZNP4_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZNP4_9AGAM) HSP 1 Score: 63.2 bits (152), Expect = 5.950e-10 Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 1 MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAH 189
M LSK D PTT E+E M YRE +G L+W++T++RPDIA V +A+F+ NPG H
Sbjct: 385 MDNGLILSKSDGPTTDAEREAMKGRPYRELVGSLIWLSTISRPDIAFVAGYLAQFNANPGERH 447
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A328KYS8_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_331 TaxID=1969379 RepID=A0A328KYS8_9BACI) HSP 1 Score: 60.8 bits (146), Expect = 1.050e-9 Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1
Query: 19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAH 189
LS PTT +E+++M Y E +G L W+AT TRPDIAC V + RF NPG H
Sbjct: 29 LSTNMSPTTDQERDNMKLVPYSELVGSLNWLATTTRPDIACAVGTLCRFISNPGRQH 85
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A484M7A7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M7A7_9ASTE) HSP 1 Score: 60.5 bits (145), Expect = 5.350e-9 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 16 ALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
ALSK P+TPE+KE MMK Y A+G +++ TRPD++ + +R+ NPG AH V I+
Sbjct: 584 ALSKSQSPSTPEQKELMMKVPYASAIGSIMYAMICTRPDVSFALSVTSRYQGNPGEAHWTAVKNIL 649
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A484LAG6_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LAG6_9ASTE) HSP 1 Score: 58.2 bits (139), Expect = 1.170e-8 Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 1 MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
M+ LSK P+TPE+KE MMK Y A+G +++ TRPD++ + +R+ +PG AH V I+
Sbjct: 1 MTPGTVLSKNQSPSTPEQKELMMKVPYASAIGSIMYAMICTRPDVSFALSVTSRYQGSPGEAHWTAVKNIL 71
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A4Y9XUY7_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XUY7_9APHY) HSP 1 Score: 58.9 bits (141), Expect = 1.890e-8 Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
LSK EP T E++ +M K YREALG ++++A TRPD++ ++ ++RF NPG +H + + ++
Sbjct: 1188 LSKEAEPVTAEQRAEMDKIPYREALGAVMYLAVATRPDLSYPIQLLSRFMANPGYSHWRALKRVL 1252
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A484MTZ2_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MTZ2_9ASTE) HSP 1 Score: 58.2 bits (139), Expect = 3.400e-8 Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 1 MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
M+ LSK P+TPE+KE MMK Y A+G +++ TRPD++ + +R+ +PG AH V I+
Sbjct: 11 MTPGTVLSKSQSPSTPEQKELMMKVPYASAIGSIMYAMICTRPDVSFALSVTSRYQGSPGEAHWTAVKNIL 81
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A6G0R8U1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R8U1_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 3.470e-8 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
L+K DEP T E+K M YR +G L+++A TRPD++ V ++RF +NPG H I++V
Sbjct: 434 LTKADEPQTEEDKAKMKSKPYRSLVGNLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDAGIKVV 498 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6274.14038.1 >prot_H-paniculata_contig6274.14038.1 ID=prot_H-paniculata_contig6274.14038.1|Name=mRNA_H-paniculata_contig6274.14038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRback to top mRNA from alignment at H-paniculata_contig6274:6530..6742+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6274.14038.1 ID=mRNA_H-paniculata_contig6274.14038.1|Name=mRNA_H-paniculata_contig6274.14038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig6274:6530..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6274:6530..6742+ >mRNA_H-paniculata_contig6274.14038.1 ID=mRNA_H-paniculata_contig6274.14038.1|Name=mRNA_H-paniculata_contig6274.14038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig6274:6530..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |