mRNA_H-paniculata_contig6274.14038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6274.14038.1
Unique NamemRNA_H-paniculata_contig6274.14038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A6A3IVK9_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IVK9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.860e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVI 204
            LS+ D P T EEK++M KF YREA+G  +++   TRPD+A  +R V+R+ +NPGP H   V+
Sbjct:  112 LSESDFPQTEEEKQNMEKFPYREAVGSFMYLMMGTRPDLANFIRQVSRYLQNPGPHHWNYVV 173          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 66.6 bits (161), Expect = 3.570e-11
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
            LSK   P TP+E E+M +  Y  A+G LL++ATMTRPDIA     +ARF+ NPG  H K V  ++
Sbjct:  366 LSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVL 430          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC)

HSP 1 Score: 63.5 bits (153), Expect = 4.400e-10
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   37 PTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEI 210
            P T  EKE+M    YREA+G L W+A MTRPDIA  V   +RF +NPG  H K+V  I
Sbjct:  657 PKTQAEKEEMKDIPYREAVGNLQWLANMTRPDIAQAVGVASRFCQNPGVQHWKLVKRI 714          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A4Y9ZNP4_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZNP4_9AGAM)

HSP 1 Score: 63.2 bits (152), Expect = 5.950e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAH 189
            M     LSK D PTT  E+E M    YRE +G L+W++T++RPDIA V   +A+F+ NPG  H
Sbjct:  385 MDNGLILSKSDGPTTDAEREAMKGRPYRELVGSLIWLSTISRPDIAFVAGYLAQFNANPGERH 447          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A328KYS8_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_331 TaxID=1969379 RepID=A0A328KYS8_9BACI)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-9
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAH 189
            LS    PTT +E+++M    Y E +G L W+AT TRPDIAC V  + RF  NPG  H
Sbjct:   29 LSTNMSPTTDQERDNMKLVPYSELVGSLNWLATTTRPDIACAVGTLCRFISNPGRQH 85          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A484M7A7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M7A7_9ASTE)

HSP 1 Score: 60.5 bits (145), Expect = 5.350e-9
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   16 ALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
            ALSK   P+TPE+KE MMK  Y  A+G +++    TRPD++  +   +R+  NPG AH   V  I+
Sbjct:  584 ALSKSQSPSTPEQKELMMKVPYASAIGSIMYAMICTRPDVSFALSVTSRYQGNPGEAHWTAVKNIL 649          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A484LAG6_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LAG6_9ASTE)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-8
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
            M+    LSK   P+TPE+KE MMK  Y  A+G +++    TRPD++  +   +R+  +PG AH   V  I+
Sbjct:    1 MTPGTVLSKNQSPSTPEQKELMMKVPYASAIGSIMYAMICTRPDVSFALSVTSRYQGSPGEAHWTAVKNIL 71          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A4Y9XUY7_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XUY7_9APHY)

HSP 1 Score: 58.9 bits (141), Expect = 1.890e-8
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
            LSK  EP T E++ +M K  YREALG ++++A  TRPD++  ++ ++RF  NPG +H + +  ++
Sbjct: 1188 LSKEAEPVTAEQRAEMDKIPYREALGAVMYLAVATRPDLSYPIQLLSRFMANPGYSHWRALKRVL 1252          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A484MTZ2_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MTZ2_9ASTE)

HSP 1 Score: 58.2 bits (139), Expect = 3.400e-8
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
            M+    LSK   P+TPE+KE MMK  Y  A+G +++    TRPD++  +   +R+  +PG AH   V  I+
Sbjct:   11 MTPGTVLSKSQSPSTPEQKELMMKVPYASAIGSIMYAMICTRPDVSFALSVTSRYQGSPGEAHWTAVKNIL 81          
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Match: A0A6G0R8U1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R8U1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.470e-8
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   19 LSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVRGVARFSKNPGPAHKKVVIEIV 213
            L+K DEP T E+K  M    YR  +G L+++A  TRPD++  V  ++RF +NPG  H    I++V
Sbjct:  434 LTKADEPQTEEDKAKMKSKPYRSLVGNLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDAGIKVV 498          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6274.14038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3IVK9_9STRA1.860e-1148.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
E2LZP6_MONPE3.570e-1149.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B3L7_ROZAC4.400e-1053.45Integrase, catalytic core domain-containing protei... [more]
A0A4Y9ZNP4_9AGAM5.950e-1047.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A328KYS8_9BACI1.050e-949.12Uncharacterized protein (Fragment) n=1 Tax=Bacillu... [more]
A0A484M7A7_9ASTE5.350e-942.42Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484LAG6_9ASTE1.170e-838.03Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A4Y9XUY7_9APHY1.890e-840.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A484MTZ2_9ASTE3.400e-838.03Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
A0A6G0R8U1_9STRA3.470e-841.54Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6274contigH-paniculata_contig6274:6530..6742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.1
Seed ortholog evalue4.7e-10
Seed eggNOG ortholog65672.G4TYB3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size214
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.1559122-CDS-H-paniculata_contig6274:6529..67421622930717.1559122-CDS-H-paniculata_contig6274:6529..6742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6274 6530..6742 +
1691481420.4387271-CDS-H-paniculata_contig6274:6529..67421691481420.4387271-CDS-H-paniculata_contig6274:6529..6742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6274 6530..6742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6274.14038.1prot_H-paniculata_contig6274.14038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6274 6530..6742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6274.14038.1

>prot_H-paniculata_contig6274.14038.1 ID=prot_H-paniculata_contig6274.14038.1|Name=mRNA_H-paniculata_contig6274.14038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MSGAPALSKGDEPTTPEEKEDMMKFTYREALGELLWMATMTRPDIACVVR
GVARFSKNPGPAHKKVVIEIV
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mRNA from alignment at H-paniculata_contig6274:6530..6742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6274.14038.1 ID=mRNA_H-paniculata_contig6274.14038.1|Name=mRNA_H-paniculata_contig6274.14038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig6274:6530..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGAGCACCAGCACTATCAAAAGGGGACGAGCCGACGACCCCGGA GGAGAAAGAGGATATGATGAAATTCACATATCGAGAGGCATTGGGGGAGC TATTGTGGATGGCGACGATGACGCGACCGGATATAGCATGCGTAGTACGT GGCGTTGCAAGGTTCTCCAAAAACCCCGGGCCAGCACACAAGAAGGTGGT GATTGAGATAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6274:6530..6742+

>mRNA_H-paniculata_contig6274.14038.1 ID=mRNA_H-paniculata_contig6274.14038.1|Name=mRNA_H-paniculata_contig6274.14038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig6274:6530..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGAGCACCAGCACTATCAAAAGGGGACGAGCCGACGACCCCGGA
GGAGAAAGAGGATATGATGAAATTCACATATCGAGAGGCATTGGGGGAGC
TATTGTGGATGGCGACGATGACGCGACCGGATATAGCATGCGTAGTACGT
GGCGTTGCAAGGTTCTCCAAAAACCCCGGGCCAGCACACAAGAAGGTGGT
GATTGAGATAGTGATGTCGGGAGCACCAGCACTATCAAAAGGGGACGAGC
CGACGACCCCGGAGGAGAAAGAGGATATGATGAAATTCACATATCGAGAG
GCATTGGGGGAGCTATTGTGGATGGCGACGATGACGCGACCGGATATAGC
ATGCGTAGTACGTGGCGTTGCAAGGTTCTCCAAAAACCCCGGGCCAGCAC
ACAAGAAGGTGGTGATTGAGATAGTG
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