mRNA_H-paniculata_contig6273.14035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6273.14035.1
Unique NamemRNA_H-paniculata_contig6273.14035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-12
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG 289
            LYGLKQA   W K LV  +   +G  Q  +D CV RL + GVV M++ VHVDD+   GK  +C+     L      T  GEL+ Y G  F RD  +G
Sbjct:  751 LYGLKQASRTWHKHLVRGM-KCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRDLNEYVPITNLGELRLYAGIRFSRDFAQG 846          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A0A9YFJ4_LYGHE (Copia protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YFJ4_LYGHE)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-8
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSV-KCDSLFAALRAEFQTT-RGELKWYLGCAFWRDIVRGV 292
            LYGLKQ+G  W  +L E L   +G+  SKSDPCV+ L+K     +I+ ++VDD+ +A K++ K ++L A L+ E +    G + + LG  F  +   GV
Sbjct:   58 LYGLKQSGRQWYLKLDEKL-KKLGLKPSKSDPCVYTLDKGTEDVVILTIYVDDLCLASKNLSKLNTLKAKLKEECKMKDMGRIHYCLGLEFKYEPEEGV 155          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A1M2VT27_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VT27_TRAPU)

HSP 1 Score: 60.1 bits (144), Expect = 1.910e-8
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDV-IVAGKSVKCDSLFAALRAEFQTT-RGELKWYLGCAFWRD 277
            LYGLKQ+   W K+L+ VL + +GM+QS  D  VF    +G   +++ VHVDD+ +VA        + A LR  F+ +  GE+ W LG A  RD
Sbjct:   77 LYGLKQSARHWHKKLLRVLRDKLGMSQSDVDQAVFY-RVDGTDLIVIVVHVDDLTVVAATDALIREVKAKLREAFEISDEGEIHWILGFAVERD 169          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A182GNG6_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNG6_AEDAL)

HSP 1 Score: 59.7 bits (143), Expect = 2.570e-8
Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKC-DSLFAALRAEFQTTRG-ELKWYLGCAFWRDIVRG 289
            LYGLKQA   W++R    +   +   +SK+D C++ + K+    ++M ++VDD++VAG S+K  +++   L  EF+ T G E++ +LG    RD+  G
Sbjct:   43 LYGLKQASRAWNERFHNFVKKQLKFERSKNDQCLY-VWKSDKGTVLMVIYVDDIVVAGSSLKLVETVKRCLANEFEMTDGGEIRCFLGLRIDRDVKNG 139          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5K5C3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.710e-8
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 2
Query:   32 WSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDI 280
            W + LV  +   V   Q  +D CV RL ++  V M++ VHVDD+   G+  +CD   A L      +  GEL+WY GC F RDI
Sbjct:  371 WHQHLVRGM-KRVHFEQCLADACVMRLVEHRAVTMVVVVHVDDIPSIGRKGRCDQFGADLIKYVPISNLGELRWYAGCRFSRDI 453          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A4Y2FVN1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FVN1_ARAVE)

HSP 1 Score: 59.7 bits (143), Expect = 2.750e-8
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVK 187
            LYGLKQ+G  W  RL E+L NN G+  +KSDPCVF ++ N  +  I+ V+VDD+++  +  K
Sbjct:  515 LYGLKQSGRCWFSRLKEIL-NNFGLNNTKSDPCVFHMKNNNKLT-ILTVYVDDILMFSEDTK 574          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A3Q0EVF0_VIGRR (uncharacterized protein LOC111241419 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A3Q0EVF0_VIGRR)

HSP 1 Score: 59.3 bits (142), Expect = 3.490e-8
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVK-CDSLFAALRAEFQTTR-GELKWYLG 259
            LYGLKQA   W  +L   L++N   TQSKSD  +F +++      ++ V+VDD+I+AG S+K  D + A L   F+    GELK++LG
Sbjct:  130 LYGLKQASRQWFDKLSSFLLSN-NYTQSKSDHSLF-IKRTSTTFTVLLVYVDDIILAGNSIKEIDHIKALLHHAFRIKNLGELKYFLG 215          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.590e-7
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 2
Query:   68 VGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG 289
            +G  Q  +D CV RL + GVV M++ VHVDD+   GK  +C+     L      T  GEL+ Y G  F RD  +G
Sbjct:    4 LGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRDLNEYVPITNLGELRLYAGIRFSRDFAQG 78          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A1M2VVQ8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VVQ8_TRAPU)

HSP 1 Score: 57.4 bits (137), Expect = 1.750e-7
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDV-IVAGKSVKCDSLFAALRAEFQTT-RGELKWYLGCA 265
            LYGLKQ+   W K+L+ VL + +GM+QS  D  VF    +G   +++ VHVDD+ +VA        + A LR  F+ +  GE+ W LG A
Sbjct:  554 LYGLKQSARHWHKKLLRVLRDKLGMSQSDVDQAVFY-RVDGTDLIVIVVHVDDLTVVAATDALIREVKAKLREAFEISDEGEIHWILGFA 642          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 57.0 bits (136), Expect = 2.490e-7
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 2
Query:    2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSV-KCDSLFAALRAEFQTTR-GELKWYLGCAFWRD 277
            LYGLKQAG MW+K+L    +  +G  ++ +DPCV+   ++G +  I+ V VDD+I+ G S  + D+  +AL+  F+    GE K  LG    R+
Sbjct: 1002 LYGLKQAGRMWNKKL-NAQLTTLGFNRTNADPCVYYNNQDGKIT-ILTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRN 1093          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.300e-1242.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A0A9YFJ4_LYGHE1.890e-838.38Copia protein (Fragment) n=1 Tax=Lygus hesperus Ta... [more]
A0A1M2VT27_TRAPU1.910e-840.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GNG6_AEDAL2.570e-834.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5C3_9PHAE2.710e-839.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y2FVN1_ARAVE2.750e-846.77Retrovirus-related Pol polyprotein from transposon... [more]
A0A3Q0EVF0_VIGRR3.490e-842.05uncharacterized protein LOC111241419 n=1 Tax=Vigna... [more]
A0A6H5L5Q2_9PHAE1.590e-740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VVQ8_TRAPU1.750e-740.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C3AKI0_9AGAM2.490e-738.30Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6273contigH-paniculata_contig6273:17..308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size293
Cds size264
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930716.940255-UTR-H-paniculata_contig6273:16..441622930716.940255-UTR-H-paniculata_contig6273:16..44Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6273 17..44 +
1691481420.3780584-UTR-H-paniculata_contig6273:16..441691481420.3780584-UTR-H-paniculata_contig6273:16..44Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6273 17..44 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930716.9659414-CDS-H-paniculata_contig6273:44..3081622930716.9659414-CDS-H-paniculata_contig6273:44..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6273 45..308 +
1691481420.3895059-CDS-H-paniculata_contig6273:44..3081691481420.3895059-CDS-H-paniculata_contig6273:44..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6273 45..308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6273.14035.1prot_H-paniculata_contig6273.14035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6273 45..308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6273.14035.1

>prot_H-paniculata_contig6273.14035.1 ID=prot_H-paniculata_contig6273.14035.1|Name=mRNA_H-paniculata_contig6273.14035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGK
SVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGV
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mRNA from alignment at H-paniculata_contig6273:17..308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6273.14035.1 ID=mRNA_H-paniculata_contig6273.14035.1|Name=mRNA_H-paniculata_contig6273.14035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=292bp|location=Sequence derived from alignment at H-paniculata_contig6273:17..308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGTATGGGCTCAAGCAGGCAGGATGGATGTGGTCAAAGCGCCTTGTAG AAGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGT GTGTTTAGGCTTGAGAAAAATGGGGTGGTAGATATGATTATGTGTGTTCA TGTAGATGATGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCCCTGT TTGCGGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAGCTCAAGTGG TACCTGGGTTGTGCATTTTGGCGTGACATAGTGAGGGGAGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig6273:17..308+

>mRNA_H-paniculata_contig6273.14035.1 ID=mRNA_H-paniculata_contig6273.14035.1|Name=mRNA_H-paniculata_contig6273.14035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig6273:17..308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGAC
GCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTTGAGAAAAATGGGGTGG
TAGATATGATTATGTGTGTTCATGTAGATGATGTAATTGTTGCTGGTAAA
AGTGTGAAGTGCGATTCCCTGTTTGCGGCGTTGAGGGCGGAGTTCCAAAC
CACGAGAGGCGAGCTCAAGTGGTACCTGGGTTGTGCATTTTGGCGTGACA
TAGTGAGGGGAGTTATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAAC
AACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTTGA
GAAAAATGGGGTGGTAGATATGATTATGTGTGTTCATGTAGATGATGTAA
TTGTTGCTGGTAAAAGTGTGAAGTGCGATTCCCTGTTTGCGGCGTTGAGG
GCGGAGTTCCAAACCACGAGAGGCGAGCTCAAGTGGTACCTGGGTTGTGC
ATTTTGGCGTGACATAGTGAGGGGAGTT
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