prot_H-paniculata_contig6273.14035.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6273.14035.1
Unique Nameprot_H-paniculata_contig6273.14035.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length88
Homology
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-8
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 0
Query:    2 WSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG 87
            W K LV  +   +G  Q  +D CV RL + GVV M++ VHVDD+   GK  +C+     L      T  GEL+ Y G  F RD  +G
Sbjct:  761 WHKHLVRGM-KCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRDLNEYVPITNLGELRLYAGIRFSRDFAQG 846          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5K5C3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.940e-8
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 0
Query:    2 WSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDI 84
            W + LV  +   V   Q  +D CV RL ++  V M++ VHVDD+   G+  +CD   A L      +  GEL+WY GC F RDI
Sbjct:  371 WHQHLVRGM-KRVHFEQCLADACVMRLVEHRAVTMVVVVHVDDIPSIGRKGRCDQFGADLIKYVPISNLGELRWYAGCRFSRDI 453          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-7
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 0
Query:   14 VGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG 87
            +G  Q  +D CV RL + GVV M++ VHVDD+   GK  +C+     L      T  GEL+ Y G  F RD  +G
Sbjct:    4 LGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRDLNEYVPITNLGELRLYAGIRFSRDFAQG 78          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6S7KQT6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KQT6_PARCT)

HSP 1 Score: 53.1 bits (126), Expect = 3.060e-6
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 0
Query:    2 WSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKS-VKCDSLFAALRAEFQTT-RGELKWYLG 77
            W+  L E L  ++G TQ++SDPC++  EK+G +  I+ +HVD++I+AGK+  K   L  ++   FQ    GELK+ LG
Sbjct:   60 WNSVLDEHL-KSIGFTQTESDPCIYVKEKDGNI-FIVVIHVDNIILAGKTNEKIAKLKESIAERFQVAGMGELKYILG 135          
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A1M2VT27_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VT27_TRAPU)

HSP 1 Score: 49.7 bits (117), Expect = 6.320e-5
Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 0
Query:    2 WSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDV-IVAGKSVKCDSLFAALRAEFQTT-RGELKWYLGCAFWRD 83
            W K+L+ VL + +GM+QS  D  VF    +G   +++ VHVDD+ +VA        + A LR  F+ +  GE+ W LG A  RD
Sbjct:   87 WHKKLLRVLRDKLGMSQSDVDQAVFY-RVDGTDLIVIVVHVDDLTVVAATDALIREVKAKLREAFEISDEGEIHWILGFAVERD 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.450e-839.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5C3_9PHAE1.940e-839.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5Q2_9PHAE1.160e-740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7KQT6_PARCT3.060e-641.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VT27_TRAPU6.320e-538.10Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6273contigH-paniculata_contig6273:45..308 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6273.14035.1mRNA_H-paniculata_contig6273.14035.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6273 17..308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6273.14035.1 ID=prot_H-paniculata_contig6273.14035.1|Name=mRNA_H-paniculata_contig6273.14035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGK
SVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGV
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