mRNA_H-paniculata_contig6273.14035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.300e-12 Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG 289
LYGLKQA W K LV + +G Q +D CV RL + GVV M++ VHVDD+ GK +C+ L T GEL+ Y G F RD +G
Sbjct: 751 LYGLKQASRTWHKHLVRGM-KCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRDLNEYVPITNLGELRLYAGIRFSRDFAQG 846
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A0A9YFJ4_LYGHE (Copia protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YFJ4_LYGHE) HSP 1 Score: 60.1 bits (144), Expect = 1.890e-8 Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSV-KCDSLFAALRAEFQTT-RGELKWYLGCAFWRDIVRGV 292
LYGLKQ+G W +L E L +G+ SKSDPCV+ L+K +I+ ++VDD+ +A K++ K ++L A L+ E + G + + LG F + GV
Sbjct: 58 LYGLKQSGRQWYLKLDEKL-KKLGLKPSKSDPCVYTLDKGTEDVVILTIYVDDLCLASKNLSKLNTLKAKLKEECKMKDMGRIHYCLGLEFKYEPEEGV 155
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A1M2VT27_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VT27_TRAPU) HSP 1 Score: 60.1 bits (144), Expect = 1.910e-8 Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDV-IVAGKSVKCDSLFAALRAEFQTT-RGELKWYLGCAFWRD 277
LYGLKQ+ W K+L+ VL + +GM+QS D VF +G +++ VHVDD+ +VA + A LR F+ + GE+ W LG A RD
Sbjct: 77 LYGLKQSARHWHKKLLRVLRDKLGMSQSDVDQAVFY-RVDGTDLIVIVVHVDDLTVVAATDALIREVKAKLREAFEISDEGEIHWILGFAVERD 169
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A182GNG6_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNG6_AEDAL) HSP 1 Score: 59.7 bits (143), Expect = 2.570e-8 Identity = 34/98 (34.69%), Postives = 59/98 (60.20%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKC-DSLFAALRAEFQTTRG-ELKWYLGCAFWRDIVRG 289
LYGLKQA W++R + + +SK+D C++ + K+ ++M ++VDD++VAG S+K +++ L EF+ T G E++ +LG RD+ G
Sbjct: 43 LYGLKQASRAWNERFHNFVKKQLKFERSKNDQCLY-VWKSDKGTVLMVIYVDDIVVAGSSLKLVETVKRCLANEFEMTDGGEIRCFLGLRIDRDVKNG 139
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5K5C3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C3_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 2.710e-8 Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 2
Query: 32 WSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDI 280
W + LV + V Q +D CV RL ++ V M++ VHVDD+ G+ +CD A L + GEL+WY GC F RDI
Sbjct: 371 WHQHLVRGM-KRVHFEQCLADACVMRLVEHRAVTMVVVVHVDDIPSIGRKGRCDQFGADLIKYVPISNLGELRWYAGCRFSRDI 453
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A4Y2FVN1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FVN1_ARAVE) HSP 1 Score: 59.7 bits (143), Expect = 2.750e-8 Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVK 187
LYGLKQ+G W RL E+L NN G+ +KSDPCVF ++ N + I+ V+VDD+++ + K
Sbjct: 515 LYGLKQSGRCWFSRLKEIL-NNFGLNNTKSDPCVFHMKNNNKLT-ILTVYVDDILMFSEDTK 574
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A3Q0EVF0_VIGRR (uncharacterized protein LOC111241419 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A3Q0EVF0_VIGRR) HSP 1 Score: 59.3 bits (142), Expect = 3.490e-8 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVK-CDSLFAALRAEFQTTR-GELKWYLG 259
LYGLKQA W +L L++N TQSKSD +F +++ ++ V+VDD+I+AG S+K D + A L F+ GELK++LG
Sbjct: 130 LYGLKQASRQWFDKLSSFLLSN-NYTQSKSDHSLF-IKRTSTTFTVLLVYVDDIILAGNSIKEIDHIKALLHHAFRIKNLGELKYFLG 215
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.590e-7 Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 2
Query: 68 VGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG 289
+G Q +D CV RL + GVV M++ VHVDD+ GK +C+ L T GEL+ Y G F RD +G
Sbjct: 4 LGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRDLNEYVPITNLGELRLYAGIRFSRDFAQG 78
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A1M2VVQ8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VVQ8_TRAPU) HSP 1 Score: 57.4 bits (137), Expect = 1.750e-7 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDV-IVAGKSVKCDSLFAALRAEFQTT-RGELKWYLGCA 265
LYGLKQ+ W K+L+ VL + +GM+QS D VF +G +++ VHVDD+ +VA + A LR F+ + GE+ W LG A
Sbjct: 554 LYGLKQSARHWHKKLLRVLRDKLGMSQSDVDQAVFY-RVDGTDLIVIVVHVDDLTVVAATDALIREVKAKLREAFEISDEGEIHWILGFA 642
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 57.0 bits (136), Expect = 2.490e-7 Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 2
Query: 2 LYGLKQAGWMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKSV-KCDSLFAALRAEFQTTR-GELKWYLGCAFWRD 277
LYGLKQAG MW+K+L + +G ++ +DPCV+ ++G + I+ V VDD+I+ G S + D+ +AL+ F+ GE K LG R+
Sbjct: 1002 LYGLKQAGRMWNKKL-NAQLTTLGFNRTNADPCVYYNNQDGKIT-ILTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRN 1093 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6273.14035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6273.14035.1 >prot_H-paniculata_contig6273.14035.1 ID=prot_H-paniculata_contig6273.14035.1|Name=mRNA_H-paniculata_contig6273.14035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp MWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMIMCVHVDDVIVAGKback to top mRNA from alignment at H-paniculata_contig6273:17..308+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6273.14035.1 ID=mRNA_H-paniculata_contig6273.14035.1|Name=mRNA_H-paniculata_contig6273.14035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=292bp|location=Sequence derived from alignment at H-paniculata_contig6273:17..308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6273:17..308+ >mRNA_H-paniculata_contig6273.14035.1 ID=mRNA_H-paniculata_contig6273.14035.1|Name=mRNA_H-paniculata_contig6273.14035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig6273:17..308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |