mRNA_H-paniculata_contig62707.14031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: D1J760_ECTSI (50S ribosomal protein L35, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J760_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.220e-33 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLVH 192
MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLVH
Sbjct: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLVH 64
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A7T8G5H8_SCYLO (50S ribosomal protein L35, chloroplastic n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5H8_SCYLO) HSP 1 Score: 108 bits (270), Expect = 1.600e-29 Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
MPKLKVRK+AKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAK++VVSK DTKAIRKML+
Sbjct: 26 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKLVVVSKADTKAIRKMLI 88
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8B0R8A0_SCYLO (50S ribosomal protein L35, chloroplastic n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A8B0R8A0_SCYLO) HSP 1 Score: 107 bits (266), Expect = 3.260e-29 Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
MPKLKVRK+AKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAK++VVSK DTK IRKML+
Sbjct: 1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKLVVVSKADTKTIRKMLI 63
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8F0F7Q5_9PHAE (50S ribosomal protein L35 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Q5_9PHAE) HSP 1 Score: 100 bits (249), Expect = 1.280e-26 Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
MPKLKVRK+AKKRYKLIAGKRF+RRKAFKGHLLEKKSPKQK+NL IVV K DTKAIRKMLV
Sbjct: 1 MPKLKVRKAAKKRYKLIAGKRFVRRKAFKGHLLEKKSPKQKRNLTGNIVVKKSDTKAIRKMLV 63
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A0R6M006_UNDPI (50S ribosomal protein L35, chloroplastic n=24 Tax=Laminariales TaxID=2886 RepID=A0A0R6M006_UNDPI) HSP 1 Score: 97.4 bits (241), Expect = 2.130e-25 Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
MPKLK RK+AKKRYKLIA KRF+RRKAFKGHLLEKKS KQK+NLA I+VSK DTKAIRKMLV
Sbjct: 1 MPKLKTRKAAKKRYKLIARKRFVRRKAFKGHLLEKKSAKQKRNLANTIIVSKSDTKAIRKMLV 63
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A6B7EUY3_9PHAE (50S ribosomal protein L35 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY3_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.680e-25 Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKML 186
MPKLKV+K+AKKRYKLIA KRFIRRKAFK H+LEKKSPKQK+NL+K IVVSK DTKAI+KML
Sbjct: 1 MPKLKVKKAAKKRYKLIAEKRFIRRKAFKSHILEKKSPKQKRNLSKSIVVSKSDTKAIKKML 62
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8F0JZ08_9PHAE (50S ribosomal protein L35 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZ08_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.750e-24 Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
MPKLK RK+A+KRYK IAGKRF+RRKAFKGHLLEKKSPKQK NLA +VVSK DTKAIR MLV
Sbjct: 1 MPKLKTRKAAQKRYKRIAGKRFVRRKAFKGHLLEKKSPKQKNNLANPVVVSKSDTKAIRIMLV 63
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8F0F748_9PHAE (50S ribosomal protein L35 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F748_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 4.140e-23 Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
M KLKVRK+AKKRYKLI GKRFIR+KAFKGHLLEKKS K+K+NL ++VSKPDTKAIR MLV
Sbjct: 1 MRKLKVRKAAKKRYKLITGKRFIRQKAFKGHLLEKKSTKRKRNLTNAVLVSKPDTKAIRIMLV 63
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A2R4QPW2_9PHAE (50S ribosomal protein L35 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW2_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 6.880e-22 Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
MPKLKVRKSAKKRYKLI GK+F+R+KAFKGHLLEKK K+K+NL+ ++V++ DTKAI+KMLV
Sbjct: 1 MPKLKVRKSAKKRYKLIKGKKFVRQKAFKGHLLEKKCSKRKRNLSSRVIVNQSDTKAIKKMLV 63
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8E5XRC2_9PHAE (50S ribosomal protein L35, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRC2_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 3.980e-21 Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1
Query: 1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
M KLKVRK+A+KRYKLI+ K F+R+KAFK HLLEKKS KQK+NLA VI+VSK D+KAI+KML+
Sbjct: 1 MSKLKVRKAARKRYKLISNKMFLRKKAFKSHLLEKKSTKQKRNLANVIIVSKADSKAIKKMLI 63 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62707.14031.1 >prot_H-paniculata_contig62707.14031.1 ID=prot_H-paniculata_contig62707.14031.1|Name=mRNA_H-paniculata_contig62707.14031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVback to top mRNA from alignment at H-paniculata_contig62707:203..397- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62707.14031.1 ID=mRNA_H-paniculata_contig62707.14031.1|Name=mRNA_H-paniculata_contig62707.14031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig62707:203..397- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62707:203..397- >mRNA_H-paniculata_contig62707.14031.1 ID=mRNA_H-paniculata_contig62707.14031.1|Name=mRNA_H-paniculata_contig62707.14031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig62707:203..397- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |