mRNA_H-paniculata_contig62707.14031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62707.14031.1
Unique NamemRNA_H-paniculata_contig62707.14031.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: D1J760_ECTSI (50S ribosomal protein L35, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J760_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.220e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLVH 192
            MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLVH
Sbjct:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLVH 64          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A7T8G5H8_SCYLO (50S ribosomal protein L35, chloroplastic n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5H8_SCYLO)

HSP 1 Score: 108 bits (270), Expect = 1.600e-29
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            MPKLKVRK+AKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAK++VVSK DTKAIRKML+
Sbjct:   26 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKLVVVSKADTKAIRKMLI 88          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8B0R8A0_SCYLO (50S ribosomal protein L35, chloroplastic n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A8B0R8A0_SCYLO)

HSP 1 Score: 107 bits (266), Expect = 3.260e-29
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            MPKLKVRK+AKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAK++VVSK DTK IRKML+
Sbjct:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKLVVVSKADTKTIRKMLI 63          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8F0F7Q5_9PHAE (50S ribosomal protein L35 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Q5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.280e-26
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            MPKLKVRK+AKKRYKLIAGKRF+RRKAFKGHLLEKKSPKQK+NL   IVV K DTKAIRKMLV
Sbjct:    1 MPKLKVRKAAKKRYKLIAGKRFVRRKAFKGHLLEKKSPKQKRNLTGNIVVKKSDTKAIRKMLV 63          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A0R6M006_UNDPI (50S ribosomal protein L35, chloroplastic n=24 Tax=Laminariales TaxID=2886 RepID=A0A0R6M006_UNDPI)

HSP 1 Score: 97.4 bits (241), Expect = 2.130e-25
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            MPKLK RK+AKKRYKLIA KRF+RRKAFKGHLLEKKS KQK+NLA  I+VSK DTKAIRKMLV
Sbjct:    1 MPKLKTRKAAKKRYKLIARKRFVRRKAFKGHLLEKKSAKQKRNLANTIIVSKSDTKAIRKMLV 63          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A6B7EUY3_9PHAE (50S ribosomal protein L35 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY3_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.680e-25
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKML 186
            MPKLKV+K+AKKRYKLIA KRFIRRKAFK H+LEKKSPKQK+NL+K IVVSK DTKAI+KML
Sbjct:    1 MPKLKVKKAAKKRYKLIAEKRFIRRKAFKSHILEKKSPKQKRNLSKSIVVSKSDTKAIKKML 62          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8F0JZ08_9PHAE (50S ribosomal protein L35 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZ08_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.750e-24
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            MPKLK RK+A+KRYK IAGKRF+RRKAFKGHLLEKKSPKQK NLA  +VVSK DTKAIR MLV
Sbjct:    1 MPKLKTRKAAQKRYKRIAGKRFVRRKAFKGHLLEKKSPKQKNNLANPVVVSKSDTKAIRIMLV 63          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8F0F748_9PHAE (50S ribosomal protein L35 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F748_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.140e-23
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            M KLKVRK+AKKRYKLI GKRFIR+KAFKGHLLEKKS K+K+NL   ++VSKPDTKAIR MLV
Sbjct:    1 MRKLKVRKAAKKRYKLITGKRFIRQKAFKGHLLEKKSTKRKRNLTNAVLVSKPDTKAIRIMLV 63          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A2R4QPW2_9PHAE (50S ribosomal protein L35 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.880e-22
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            MPKLKVRKSAKKRYKLI GK+F+R+KAFKGHLLEKK  K+K+NL+  ++V++ DTKAI+KMLV
Sbjct:    1 MPKLKVRKSAKKRYKLIKGKKFVRQKAFKGHLLEKKCSKRKRNLSSRVIVNQSDTKAIKKMLV 63          
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Match: A0A8E5XRC2_9PHAE (50S ribosomal protein L35, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRC2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.980e-21
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1
Query:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 189
            M KLKVRK+A+KRYKLI+ K F+R+KAFK HLLEKKS KQK+NLA VI+VSK D+KAI+KML+
Sbjct:    1 MSKLKVRKAARKRYKLISNKMFLRKKAFKSHLLEKKSTKQKRNLANVIIVSKADSKAIKKMLI 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62707.14031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J760_ECTSI1.220e-33100.0050S ribosomal protein L35, chloroplastic n=3 Tax=E... [more]
A0A7T8G5H8_SCYLO1.600e-2992.0650S ribosomal protein L35, chloroplastic n=3 Tax=S... [more]
A0A8B0R8A0_SCYLO3.260e-2990.4850S ribosomal protein L35, chloroplastic n=2 Tax=S... [more]
A0A8F0F7Q5_9PHAE1.280e-2687.3050S ribosomal protein L35 n=2 Tax=Laminariales Tax... [more]
A0A0R6M006_UNDPI2.130e-2584.1350S ribosomal protein L35, chloroplastic n=24 Tax=... [more]
A0A6B7EUY3_9PHAE8.680e-2583.8750S ribosomal protein L35 n=1 Tax=Cladosiphon okam... [more]
A0A8F0JZ08_9PHAE1.750e-2482.5450S ribosomal protein L35 n=1 Tax=Desmarestia acul... [more]
A0A8F0F748_9PHAE4.140e-2379.3750S ribosomal protein L35 n=1 Tax=Protohalopteris ... [more]
A0A2R4QPW2_9PHAE6.880e-2273.0250S ribosomal protein L35 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8E5XRC2_9PHAE3.980e-2173.0250S ribosomal protein L35, chloroplastic n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62707contigH-paniculata_contig62707:203..397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog2880.D1J760
Preferred namerpl35
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Ribosomal protein L35
EggNOG OGs2E9KB@1,2SFXQ@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930716.6282263-CDS-H-paniculata_contig62707:202..3971622930716.6282263-CDS-H-paniculata_contig62707:202..397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62707 203..397 -
1691481420.2785687-CDS-H-paniculata_contig62707:202..3971691481420.2785687-CDS-H-paniculata_contig62707:202..397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62707 203..397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62707.14031.1prot_H-paniculata_contig62707.14031.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62707 203..397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62707.14031.1

>prot_H-paniculata_contig62707.14031.1 ID=prot_H-paniculata_contig62707.14031.1|Name=mRNA_H-paniculata_contig62707.14031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVV
SKPDTKAIRKMLVH*
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mRNA from alignment at H-paniculata_contig62707:203..397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62707.14031.1 ID=mRNA_H-paniculata_contig62707.14031.1|Name=mRNA_H-paniculata_contig62707.14031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig62707:203..397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAATTAAAAGTAAGAAAATCTGCAAAAAAACGTTATAAACTTAT TGCTGGGAAACGCTTTATTCGTCGTAAAGCTTTTAAAGGCCATTTGCTAG AAAAGAAATCTCCGAAACAAAAAAAGAATTTAGCTAAGGTTATTGTCGTA AGTAAACCAGATACCAAGGCAATAAGAAAAATGTTAGTCCATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig62707:203..397-

>mRNA_H-paniculata_contig62707.14031.1 ID=mRNA_H-paniculata_contig62707.14031.1|Name=mRNA_H-paniculata_contig62707.14031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig62707:203..397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAATTAAAAGTAAGAAAATCTGCAAAAAAACGTTATAAACTTAT
TGCTGGGAAACGCTTTATTCGTCGTAAAGCTTTTAAAGGCCATTTGCTAG
AAAAGAAATCTCCGAAACAAAAAAAGAATTTAGCTAAGGTTATTGTCGTA
AGTAAACCAGATACCAAGGCAATAAGAAAAATGTTAGTCCATTAAATGCC
AAAATTAAAAGTAAGAAAATCTGCAAAAAAACGTTATAAACTTATTGCTG
GGAAACGCTTTATTCGTCGTAAAGCTTTTAAAGGCCATTTGCTAGAAAAG
AAATCTCCGAAACAAAAAAAGAATTTAGCTAAGGTTATTGTCGTAAGTAA
ACCAGATACCAAGGCAATAAGAAAAATGTTAGTCCATTAA
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