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Homology
BLAST of mRNA_H-paniculata_contig6262.14022.1 vs. uniprot
Match: D8LF73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF73_ECTSI) HSP 1 Score: 255 bits (652), Expect = 8.350e-74 Identity = 158/276 (57.25%), Postives = 189/276 (68.48%), Query Frame = 2
Query: 251 QFSIAFPSGKRRASILTSSLELRLGPKLPKEKVPQVVVEDSADGCGDRISASDASESLGLVRCRVCAAVMPSGHLQRHILSTCRLLPCPLCLRLLLPANEESHIEKASQSMSCPNRKTICARCGEAVVLSDFASHEREGNPSGCRRKVVSXXXXXXFCLANELEQHEVSECPEREXXXXXXXXXXXXXXXXXXVSWGCRQKTWTCGCGNIGPIPLTERPGHLKNCDAFLDAWEASIEKVMILSRVEDPELALIALSECKGNASLAARRISDDRYKI 1078
+FS++F SG RRAS LT SLE+RLGP PK + QV D DG D AS+ GL+RC CA ++ S + +HI STCRLLPC C RLLLPA+ E H+E+A CPNR+ C RCGEAVV+S+FA HE EG GC R+VV FC A+EL +H E XXXXXXXXXXXXXXXXXX CR TW CGCG GP L+ERP HLK C+AF+DAWEASIEKVMI +RVE+P LAL+AL+E +GN SLAARR++D+R I
Sbjct: 644 EFSVSFSSGIRRASSLTPSLEVRLGP--PKASLEQVA--DVTDGNTD----DRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTHCSRLLLPADRERHVEEA-----CPNRRRSCMRCGEAVVVSEFARHEAEG---GCARRVVPCAACGDFCPADELREHGAREXXXXXXXXXXXXXXXXXXXXXXXXXXXCRNMTWACGCGE-GPFALSERPAHLKTCNAFIDAWEASIEKVMIATRVENPGLALLALAESRGNVSLAARRVTDERAYI 902
BLAST of mRNA_H-paniculata_contig6262.14022.1 vs. uniprot
Match: A0A6H5L7C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C1_9PHAE) HSP 1 Score: 243 bits (621), Expect = 7.810e-71 Identity = 148/312 (47.44%), Postives = 185/312 (59.29%), Query Frame = 2
Query: 191 PVRVFSLHPAGVEILLLSLLQFSIAFPSGKRRASILTSSLELRLGPKLPKEKVPQVVVEDSADGCGDRISASDASESLGLVRCRVCAAVMPSGHLQRHILSTCRLLPCPLCLRLLLPANEESHIEKASQSMSCPNRKTICARCGEAVVLSDFASHEREGNPSGCRRKVVSXXXXXXFCLANELEQHEVSECPEREXXXXXXXXXXXXXXXXXXVSWGCRQKTWTCGCGNIGPIPLTERPGHLKNCDAFLDAWEASIEKV----------------MILSRVEDPELALIALSECKGNASLAARRISDDRYKI 1078
P+ +LHP + +FS++FPSG RRAS LT SLE+RLGP PK + QV G D + AS+ GL+RC CA ++ S + +HI STCRLLPC LC RLLLPA+ E H+E+A CPNR+ C RCGEAVV+S+FA HE EG GC R+VV XXXXX FC A++ +H ++E S CR TW CGCG GP L+ERP HLK CDAF+DAWEASIEKV MI +RVEDP +AL+AL+E +G+ SLAARR++D R I
Sbjct: 401 PLPHLTLHPGRPPCIQPQ--EFSVSFPSGIRRASSLTPSLEVRLGP--PKASLEQVA------GVTDGNTDDRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEA-----CPNRRRSCMRCGEAVVVSEFARHEAEG---GCARRVVPXXXXXDFCPADDFREHGMAE----------------------HASSLCRNMTWACGCGE-GPFALSERPEHLKTCDAFIDAWEASIEKVIARMPKIEVVRKIGKVMIATRVEDPGVALLALAESRGSVSLAARRVADKRAYI 671
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 254.6 |
| Seed ortholog evalue | 6e-65 |
| Seed eggNOG ortholog | 2880.D8LF73 |
| Preferred name | ENAH |
| KEGG ko | ko:K03099,ko:K05746 |
| KEGG Pathway | ko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231 |
| Hectar predicted targeting category | chloroplast |
| EggNOG free text desc. | positive regulation of caveolin-mediated endocytosis |
| EggNOG OGs | KOG1029@1,KOG1029@2759 |
| Ec32 ortholog description | EPS15 homology (EH) |
| Ec32 ortholog | Ec-06_001920.1 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001 |
| Exons | 5 |
| Model size | 1087 |
| Cds size | 936 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6262.14022.1 >prot_H-paniculata_contig6262.14022.1 ID=prot_H-paniculata_contig6262.14022.1|Name=mRNA_H-paniculata_contig6262.14022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
MLAAALTYPLSRIPVRVFSLHPAGVEILLLSLLQFSIAFPSGKRRASILT
SSLELRLGPKLPKEKVPQVVVEDSADGCGDRISASDASESLGLVRCRVCA
AVMPSGHLQRHILSTCRLLPCPLCLRLLLPANEESHIEKASQSMSCPNRK
TICARCGEAVVLSDFASHEREGNPSGCRRKVVSCSACGEFCLANELEQHE
VSECPEREIKCSSCGDALPARNLFYHVSWGCRQKTWTCGCGNIGPIPLTE
RPGHLKNCDAFLDAWEASIEKVMILSRVEDPELALIALSECKGNASLAAR
RISDDRYKIIP* back to topmRNA from alignment at H-paniculata_contig6262:2..3363+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig6262.14022.1 ID=mRNA_H-paniculata_contig6262.14022.1|Name=mRNA_H-paniculata_contig6262.14022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3362bp|location=Sequence derived from alignment at H-paniculata_contig6262:2..3363+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGATTGATCCATATTCTTGTGAAACCTCTTTGTGTATGTATGTAGT
ATGTACTACCGATACGGTCTCAACATATCTCCCGTTCTCTTCTTGAGAAT
AGATTCTCCATCTCACGAAAACTCTGTTATAAGTGGAATCCCCGAGATAA
CATGCTAGCTGCAGCTCTGACGTATCCACTCTCGAGAATCCCAGTTCGTG
TTTTCTCCTTGCACCCTGCTGGTGTTGAGATCCTCTTGCTATCTCTACTG
CAGTTCAGCATCGCATTTCCGTCTGGGAAGAGACGTGCGTCAATATTAAC
CTCGTCTCTGGAGTTACGTCTGGGACCAAAGTTGCCGAAGGAGAAGGTGC
CACAGGTGGTCGTTGAAGACAGCGCAGACGGTTGTGGTGATCGCATCAGT
GCAAGTGATGCTAGTGAGAGTTTGGGGCTTGTCAGGTATTGAATAACGCG
GTCATTCTCCTTTTTAGAACGAAAATTCAAGCGAGCTAGGTTGCAGACGA
GCCAAGAATTGACCCAGCTGCCAAGACATGTCTGCGCCACCAGGCAATTT
GACGCCCTTGTCACACTTTGCAACCAAGTCATCTACGGGAACACTCGGCG
ACCCGACCGCCTGCTCTGCCCGAGGCGCGAATTTGACGTGTGCACTTGAA
AGTCGCCACAACTCGAAGCAGCCGAACGCTGATCACAGTACATTCGGCGT
GTATGCGGTACCACACGCACCAAAATTGCAGGTGTCGTGTCTGCGCGGCA
GTGATGCCTTCTGGCCACCTGCAACGACATATTTTATCTACCTGTCGGCT
TCTCCCTTGCCCTCTCTGCCTGCGTCTTCTGCTCCCAGCGAACGAAGAGT
CACATATTGAGAAGGCGAGTCAAAGTATGGTACATGAACTGAGCGAAAGG
GAAGATGCTAATGTCGCAAGGAAGCGGAGCAAGAAACAAAACAACGCAAT
AATGTCCCACCCTCTTCTCCATTTAAAATCGTAGTCCGCACAACTGTTTA
CTGCGTTGTGGCTCAAACGTCTCGGAAATGTAGTACAGCGTGACAGACTG
GTTCGGAAGTAAGAGTAACCAGGTAGAACAGGAATCGACATCACAAACAC
AGGGTTCGCCGCACAACATATTATCTCCAAGGTTAGTCAGGTGTGGAGCG
GGTTGATTTTTCTGCTCAGTTGCTTATCAAAAGCACCAAGTACGAGGATG
CGTAAACTGCCCCTGGCCGCTGAGCGAGACGAAGGGAATGATCTCCCCCT
TGAGCCTGAGCCCTGTCCTACATGGCAGAGCGATGTGTAATGAGTAACGA
TAATAGGTGAACTCCGTGATGGTCGGCGACAGCTTATTCACCAAGCGTTT
CTATCCACTTCTCTCTCTTCTCTGTGCGCTAATGGCAAATGGCACAGTCA
TGTCCCAACCGCAAAACTATCTGCGCTCGTTGCGGGGAAGCTGTTGTCTT
GAGCGATTTTGCGAGTCATGAGAGAGAAGGGAACCCAAGCGGCTGCCGTC
GGAAGGTGGTGTCGTGTTCGGCGTGTGGCGAGTTTTGTCTGGCAAACGAG
CTGGAGCAGCACGAGGTACTTGCGACAGACTTTCGTCGTGCTGCTGCATA
CGCGTGCGTGTCGCGTGTTCGTGTGCCTGTTCATGCATGATCATGTGCCG
GCAGAAGACCAAAATAACGTATACATCCGCGCTCACGCTTAACAGTACCC
CCCTTCCCTCCTAAGCACCTCAAACGTATTTATGTCTTACTAGTTTTATT
AGAGTGTGGGAACTGAGCAGCAAGTACTTCATTCGTACCTGGATACGCAA
GCCTTCCAAATCAAAATGCCATCCTTTCCTCTCTCCCCTTAGCGAAACGT
AACGCCTTTGGCAGGTGAGTGAGTGCCCTGAACGGGAAATTAAGTGCAGC
TCTTGCGGCGATGCTCTGCCAGCTCGAAACCTGTTTTACCACGTGTCTTG
GGGGTGTCGTCAAAAGACATGGACTTGCGGGTGCGGGAATATTGGACCGA
TACCTCTTACAGAACGACCTGGGCACCTCAAGAATTGCGATGCTTTCCTA
GATGCTTGGGAAGCTTCTATCGAGAAGGTACGGTTTAAAATGAAAACATT
TCTCCCCCCGAACAAGTACGAATGGAACATTCGCAACTATCTCGAACTAT
CACTATTTGTCTTGGGTAAACATGTATTTATTCGTTTACAAGTTTATATA
TGGTCACTCTACAGATGGTCACCTGATAGTCGTATTCCTGGCGAACAGTC
ACACATGCAGGTCCTGTTTACATTCTGGGTGGTACTGTACAGGTTGAATA
CTCCATCTATCCGAGCTTTTCGATACTGTATGGTACATCGAGTACACTGT
ATATTATTCGCGTCACATGGACATCTTCACCCACCGGACAAATACGAATA
CTTGGAGTACTCGCCACGAAAATTTTTAAGTATTCACCTGCGTTTTGGAA
TGAGCGGACACATAGAATAAAGTACCCACCCCTGTCCATTCGATTTACGA
GTATTATTAGCAGTCATGGATGGTCCAGGGCACATAGAATACATGAGCTC
ATTCTGAAACTCAAGCGAATACTGTAATTTTCGTGGCGAATACGCCAAGT
ATTTGTATCTGTCCGGGGGGTGGACATCTTCCGATCTCAAACAGATACAG
TATTCATTCCAGATTTCTCGTCTTTATTCGTGTCTTGTATTCGTATTTGT
CTGCGGAGTGAAATATTGATAAGACACCATTCCTCCTCTTTGGGAATAAC
TAATAGAACACTAAAGAAGGGGCCACCAAAATGTCACCCTTAAAATATTC
GTGAGGGTATTTTATTCTCAGGTACTGACGTTCTAAATCTAATGGGCATG
CGTCAGCTGTCATATTAATATCTTGTGTAACCGTTTCTAGAGAAAATATC
TACTTGCCTGAGGTAGCAGAGCAACCCGTTTTAACTGCGCCATTCCCAGC
TTGTGCCGGTGCCTTTCTGCTGATGATGAAGTATGCCCCGCTTTTGTGTT
CGTCTCCTTGCCCGTAAAACTCTGCAGGTCATGGCTCAAATGCCCAATAT
CGAAGTTTTTCGCCGCATCGGAAAGGTACCACCGACTACGCCTTAACACA
TTTATCAAGGAAAAACCAAGGATCTGCATGTCTTAGGGTATGCATGTCAA
CGATGTGTATGTTACCAGCTATCCTGGAGAGGAAACGTTATCTACCCCTG
GCTCTACTCCTCGCATTCCTTGCTGATTTTGGAGGGTAGGTGATGATTTT
ATCCCGAGTGGAGGATCCTGAGCTGGCGCTGATCGCGCTCTCCGAGTGTA
AAGGAAACGCCAGTTTAGCTGCCAGAAGAATATCGGACGATAGGTACAAA
ATAATACCTTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig6262:2..3363+ >mRNA_H-paniculata_contig6262.14022.1 ID=mRNA_H-paniculata_contig6262.14022.1|Name=mRNA_H-paniculata_contig6262.14022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig6262:2..3363+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGCTGCAGCTCTGACGTATCCACTCTCGAGAATCCCAGTTCGTGT
TTTCTCCTTGCACCCTGCTGGTGTTGAGATCCTCTTGCTATCTCTACTGC
AGTTCAGCATCGCATTTCCGTCTGGGAAGAGACGTGCGTCAATATTAACC
TCGTCTCTGGAGTTACGTCTGGGACCAAAGTTGCCGAAGGAGAAGGTGCC
ACAGGTGGTCGTTGAAGACAGCGCAGACGGTTGTGGTGATCGCATCAGTG
CAAGTGATGCTAGTGAGAGTTTGGGGCTTGTCAGATGCTAGCTGCAGCTC
TGACGTATCCACTCTCGAGAATCCCAGTTCGTGTTTTCTCCTTGCACCCT
GCTGGTGTTGAGATCCTCTTGCTATCTCTACTGCAGTTCAGCATCGCATT
TCCGTCTGGGAAGAGACGTGCGTCAATATTAACCTCGTCTCTGGAGTTAC
GTCTGGGACCAAAGTTGCCGAAGGAGAAGGTGCCACAGGTGGTCGTTGAA
GACAGCGCAGACGGTTGTGGTGATCGCATCAGTGCAAGTGATGCTAGTGA
GAGTTTGGGGCTTGTCAGGTGTCGTGTCTGCGCGGCAGTGATGCCTTCTG
GCCACCTGCAACGACATATTTTATCTACCTGTCGGCTTCTCCCTTGCCCT
CTCTGCCTGCGTCTTCTGCTCCCAGCGAACGAAGAGTCACATATTGAGAA
GGCGAGTCAAAGTATGGTGTCGTGTCTGCGCGGCAGTGATGCCTTCTGGC
CACCTGCAACGACATATTTTATCTACCTGTCGGCTTCTCCCTTGCCCTCT
CTGCCTGCGTCTTCTGCTCCCAGCGAACGAAGAGTCACATATTGAGAAGG
CGAGTCAAAGTATGTCATGTCCCAACCGCAAAACTATCTGCGCTCGTTGC
GGGGAAGCTGTTGTCTTGAGCGATTTTGCGAGTCATGAGAGAGAAGGGAA
CCCAAGCGGCTGCCGTCGGAAGGTGGTGTCGTGTTCGGCGTGTGGCGAGT
TTTGTCTGGCAAACGAGCTGGAGCAGCACGAGTCATGTCCCAACCGCAAA
ACTATCTGCGCTCGTTGCGGGGAAGCTGTTGTCTTGAGCGATTTTGCGAG
TCATGAGAGAGAAGGGAACCCAAGCGGCTGCCGTCGGAAGGTGGTGTCGT
GTTCGGCGTGTGGCGAGTTTTGTCTGGCAAACGAGCTGGAGCAGCACGAG
GTGAGTGAGTGCCCTGAACGGGAAATTAAGTGCAGCTCTTGCGGCGATGC
TCTGCCAGCTCGAAACCTGTTTTACCACGTGTCTTGGGGGTGTCGTCAAA
AGACATGGACTTGCGGGTGCGGGAATATTGGACCGATACCTCTTACAGAA
CGACCTGGGCACCTCAAGAATTGCGATGCTTTCCTAGATGCTTGGGAAGC
TTCTATCGAGAAGGTGAGTGAGTGCCCTGAACGGGAAATTAAGTGCAGCT
CTTGCGGCGATGCTCTGCCAGCTCGAAACCTGTTTTACCACGTGTCTTGG
GGGTGTCGTCAAAAGACATGGACTTGCGGGTGCGGGAATATTGGACCGAT
ACCTCTTACAGAACGACCTGGGCACCTCAAGAATTGCGATGCTTTCCTAG
ATGCTTGGGAAGCTTCTATCGAGAAGGTGATGATTTTATCCCGAGTGGAG
GATCCTGAGCTGGCGCTGATCGCGCTCTCCGAGTGTAAAGGAAACGCCAG
TTTAGCTGCCAGAAGAATATCGGACGATAGGTACAAAATAATACCTTAGG
TGATGATTTTATCCCGAGTGGAGGATCCTGAGCTGGCGCTGATCGCGCTC
TCCGAGTGTAAAGGAAACGCCAGTTTAGCTGCCAGAAGAATATCGGACGA
TAGGTACAAAATAATACCTTAG back to top
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