prot_H-paniculata_contig6262.14022.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6262.14022.1
Unique Nameprot_H-paniculata_contig6262.14022.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length312
Homology
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BLAST of mRNA_H-paniculata_contig6262.14022.1 vs. uniprot
Match: D8LF73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF73_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.550e-74
Identity = 158/276 (57.25%), Postives = 189/276 (68.48%), Query Frame = 0 
Query:   34 QFSIAFPSGKRRASILTSSLELRLGPKLPKEKVPQVVVEDSADGCGDRISASDASESLGLVRCRVCAAVMPSGHLQRHILSTCRLLPCPLCLRLLLPANEESHIEKASQSMSCPNRKTICARCGEAVVLSDFASHEREGNPSGCRRKVVSXXXXXXFCLANELEQHEVSECPEREXXXXXXXXXXXXXXXXXXVSWGCRQKTWTCGCGNIGPIPLTERPGHLKNCDAFLDAWEASIEKVMILSRVEDPELALIALSECKGNASLAARRISDDRYKI 309
            +FS++F SG RRAS LT SLE+RLGP  PK  + QV   D  DG  D      AS+  GL+RC  CA ++ S  + +HI STCRLLPC  C RLLLPA+ E H+E+A     CPNR+  C RCGEAVV+S+FA HE EG   GC R+VV       FC A+EL +H   E     XXXXXXXXXXXXXXXXXX    CR  TW CGCG  GP  L+ERP HLK C+AF+DAWEASIEKVMI +RVE+P LAL+AL+E +GN SLAARR++D+R  I
Sbjct:  644 EFSVSFSSGIRRASSLTPSLEVRLGP--PKASLEQVA--DVTDGNTD----DRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTHCSRLLLPADRERHVEEA-----CPNRRRSCMRCGEAVVVSEFARHEAEG---GCARRVVPCAACGDFCPADELREHGAREXXXXXXXXXXXXXXXXXXXXXXXXXXXCRNMTWACGCGE-GPFALSERPAHLKTCNAFIDAWEASIEKVMIATRVENPGLALLALAESRGNVSLAARRVTDERAYI 902
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BLAST of mRNA_H-paniculata_contig6262.14022.1 vs. uniprot
Match: A0A6H5L7C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C1_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 2.080e-71
Identity = 144/292 (49.32%), Postives = 178/292 (60.96%), Query Frame = 0 
Query:   34 QFSIAFPSGKRRASILTSSLELRLGPKLPKEKVPQVVVEDSADGCGDRISASDASESLGLVRCRVCAAVMPSGHLQRHILSTCRLLPCPLCLRLLLPANEESHIEKASQSMSCPNRKTICARCGEAVVLSDFASHEREGNPSGCRRKVVSXXXXXXFCLANELEQHEVSECPEREXXXXXXXXXXXXXXXXXXVSWGCRQKTWTCGCGNIGPIPLTERPGHLKNCDAFLDAWEASIEKV----------------MILSRVEDPELALIALSECKGNASLAARRISDDRYKI 309
            +FS++FPSG RRAS LT SLE+RLGP  PK  + QV       G  D  +   AS+  GL+RC  CA ++ S  + +HI STCRLLPC LC RLLLPA+ E H+E+A     CPNR+  C RCGEAVV+S+FA HE EG   GC R+VV XXXXX FC A++  +H ++E                        S  CR  TW CGCG  GP  L+ERP HLK CDAF+DAWEASIEKV                MI +RVEDP +AL+AL+E +G+ SLAARR++D R  I
Sbjct:  419 EFSVSFPSGIRRASSLTPSLEVRLGP--PKASLEQVA------GVTDGNTDDRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEA-----CPNRRRSCMRCGEAVVVSEFARHEAEG---GCARRVVPXXXXXDFCPADDFREHGMAE----------------------HASSLCRNMTWACGCGE-GPFALSERPEHLKTCDAFIDAWEASIEKVIARMPKIEVVRKIGKVMIATRVEDPGVALLALAESRGSVSLAARRVADKRAYI 671
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6262.14022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF73_ECTSI1.550e-7457.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7C1_9PHAE2.080e-7149.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 172..236
e-value: 1.6E-6
score: 29.7
NoneNo IPR availablePANTHERPTHR16295TRAF-TYPE ZINC FINGER PROTEIN-RELATEDcoord: 180..270
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6262contigH-paniculata_contig6262:153..3363 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6262.14022.1mRNA_H-paniculata_contig6262.14022.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6262 2..3363 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6262.14022.1 ID=prot_H-paniculata_contig6262.14022.1|Name=mRNA_H-paniculata_contig6262.14022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
MLAAALTYPLSRIPVRVFSLHPAGVEILLLSLLQFSIAFPSGKRRASILT
SSLELRLGPKLPKEKVPQVVVEDSADGCGDRISASDASESLGLVRCRVCA
AVMPSGHLQRHILSTCRLLPCPLCLRLLLPANEESHIEKASQSMSCPNRK
TICARCGEAVVLSDFASHEREGNPSGCRRKVVSCSACGEFCLANELEQHE
VSECPEREIKCSSCGDALPARNLFYHVSWGCRQKTWTCGCGNIGPIPLTE
RPGHLKNCDAFLDAWEASIEKVMILSRVEDPELALIALSECKGNASLAAR
RISDDRYKIIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD