mRNA_H-paniculata_contig6261.14021.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6261.14021.1
Unique NamemRNA_H-paniculata_contig6261.14021.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A6H5KFT3_9PHAE (PUA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.700e-23
Identity = 60/101 (59.41%), Postives = 69/101 (68.32%), Query Frame = 2 
Query:  203 QRATLHYAVRRRALIYSAVAHGIEVSGEAGDCVQEDSALPPFEPKKVVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWGKTLPDS 505
            QRAT    V R   + S+VA G+   G    C ++ S       K VV+A+GKARLFWDGNPLVYGGAV RVEG PAAG+VVDV+DSSGKFIAWG   PDS
Sbjct:   37 QRATAAVRVCRPTAL-SSVAGGVAEPGTTVACSRKLS-------KAVVVARGKARLFWDGNPLVYGGAVSRVEGDPAAGDVVDVIDSSGKFIAWGVYNPDS 129
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: D7FS18_ECTSI (PUA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS18_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.980e-22
Identity = 60/102 (58.82%), Postives = 69/102 (67.65%), Query Frame = 2 
Query:  200 RQRATLHYAVRRRALIYSAVAHGIEVSGEAGDCVQEDSALPPFEPKKVVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWGKTLPDS 505
            R  A +H   R RAL  S+VA  +   G    C ++ S       K VV+A+GKARLFWDGNPLVYGGAV RVEG PAAG+VVDV+DSSGKFIAWG   PDS
Sbjct:   38 RATAAVHVC-RPRAL--SSVAGAVAEPGTTVACSRKLS-------KAVVVARGKARLFWDGNPLVYGGAVSRVEGDPAAGDVVDVIDSSGKFIAWGVYNPDS 129
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A8J2SGB3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGB3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-10
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 2 
Query:  335 KKVVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWGKTLPDS 505
            K V I +GKARLF DGNPLVYGGAV R  G  + G+ V+VVD +G  I WG   PDS
Sbjct:   32 KSVTIKRGKARLFRDGNPLVYGGAVERTSGDVSRGDAVEVVDGAGNNIGWGFYNPDS 88
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A836CPI8_9STRA (Ribosomal RNA large subunit methyltransferase I-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.460e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 2 
Query:  341 VVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWG 487
            V IAKGKARLF+DGNPLV+GGAV  V G+PA  +VV+V    GK I WG
Sbjct:   26 VTIAKGKARLFYDGNPLVFGGAVAAVTGRPAQCDVVEVKSDVGKLIGWG 74
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A7X7L9M1_9BACT (Class I SAM-dependent rRNA methyltransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X7L9M1_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 3.120e-9
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:  338 KVVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWGKTLPDS 505
            +V I KGKA+ FW G+PLV+ GA+ +V+G P AGE VDV+D +G  I WG   P S
Sbjct:    9 RVSIRKGKAKPFWYGHPLVFSGAIQKVDGSPEAGECVDVLDQNGNRIGWGVFNPHS 64
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A6P5GU83_ANACO (uncharacterized protein LOC109724890 isoform X1 n=5 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GU83_ANACO)

HSP 1 Score: 62.8 bits (151), Expect = 9.920e-8
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:  338 KVVIAKGKARLFWDGNPLVYGGAVLRVEGKPA--AGEVVDVVDSSGKFIAWG 487
            KVV+ KGKA++F DGNP+VY GAV R+ G+P    G+VV V D SGK I WG
Sbjct:  109 KVVLKKGKAQIFRDGNPMVYSGAVDRIIGRPPPRTGDVVLVADGSGKPIGWG 160
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A061RB59_9CHLO (Rna binding protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RB59_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 7.920e-7
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:  341 VVIAKGKARLFWDGNPLVYGGAVLRVEGKPA--AGEVVDVVDSSGKFIAWGKTLPDSCRFVLR-----SELRQSCFC 550
            VV+ KGKARLF +G P+VY GA+ RV G+PA  AG+ V V D +    AWG   P+S  F +R      E R+S  C
Sbjct:   89 VVLKKGKARLFKEGQPIVYQGAIDRVVGRPAPVAGDCVMVSDGAQSVFAWGVINPESSVFRVRLMQFEEEARRSPGC 165
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: K8FI44_9CHLO (Putative methyltransferase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FI44_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 1.090e-6
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  341 VVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWGKTLPDSCRFVLR 523
            V +A GKA +F DGNP+VYGGA+ R+E  P  G+VV V D + + I WG T   S  F +R
Sbjct:  119 VQLASGKANIFMDGNPIVYGGAIDRMENDPKDGQVVGVFDHNQRPIGWG-TFNSSSMFRVR 178
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A7V6E8D7_9DELT (Class I SAM-dependent rRNA methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V6E8D7_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 2.310e-6
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 2 
Query:  341 VVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWG 487
            V I +GKAR FW GNPLVY GA+ +++G PA G +V+V    GK I +G
Sbjct:    6 VFIKRGKARPFWFGNPLVYSGAIEKIDGSPAGGGLVEVRSYEGKTIGFG 54
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BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Match: A0A7S0W985_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W985_9CRYP)

HSP 1 Score: 56.2 bits (134), Expect = 2.980e-6
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 2 
Query:  260 AHGIEVSGEAGDCVQED--SALPPFEPKKVVIAKGKARLFWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWG 487
            A G+    E  D    D  +AL       VV+  GK+RLF++GNP+V+GGAV  V G+    + V VVD +G  + WG
Sbjct:    4 AGGVSRERELVDVTSRDDVAALVGAGVPVVVLQAGKSRLFYEGNPVVFGGAVREVVGEAGDAQPVAVVDHAGNPVGWG 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6261.14021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFT3_9PHAE3.700e-2359.41PUA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS18_ECTSI1.980e-2258.82PUA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J2SGB3_9STRA2.200e-1059.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836CPI8_9STRA5.460e-1065.31Ribosomal RNA large subunit methyltransferase I-li... [more]
A0A7X7L9M1_9BACT3.120e-953.57Class I SAM-dependent rRNA methyltransferase n=1 T... [more]
A0A6P5GU83_ANACO9.920e-859.62uncharacterized protein LOC109724890 isoform X1 n=... [more]
A0A061RB59_9CHLO7.920e-746.75Rna binding protein n=1 Tax=Tetraselmis sp. GSL018... [more]
K8FI44_9CHLO1.090e-649.18Putative methyltransferase n=1 Tax=Bathycoccus pra... [more]
A0A7V6E8D7_9DELT2.310e-653.06Class I SAM-dependent rRNA methyltransferase n=1 T... [more]
A0A7S0W985_9CRYP2.980e-639.74Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6261contigH-paniculata_contig6261:11417..12549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue4.3e-20
Seed eggNOG ortholog2880.D7FS18
Hectar predicted targeting categoryother localisation
EggNOG free text desc.S-adenosylmethionine-dependent methyltransferase
EggNOG OGs2QS1I@2759,COG1092@1
Ec32 ortholog descriptionS-adenosylmethionine-dependent methyltransferase
Ec32 orthologEc-12_006830.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size732
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6261.14021.1prot_H-paniculata_contig6261.14021.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6261 11487..12409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.9676292-UTR-H-paniculata_contig6261:11416..114861622930714.9676292-UTR-H-paniculata_contig6261:11416..11486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6261 11417..11486 +
1691481419.5293095-UTR-H-paniculata_contig6261:11416..114861691481419.5293095-UTR-H-paniculata_contig6261:11416..11486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6261 11417..11486 +
1622930715.0121152-UTR-H-paniculata_contig6261:12409..125491622930715.0121152-UTR-H-paniculata_contig6261:12409..12549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6261 12410..12549 +
1691481419.5694187-UTR-H-paniculata_contig6261:12409..125491691481419.5694187-UTR-H-paniculata_contig6261:12409..12549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6261 12410..12549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.98299-CDS-H-paniculata_contig6261:11486..117911622930714.98299-CDS-H-paniculata_contig6261:11486..11791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6261 11487..11791 +
1691481419.540866-CDS-H-paniculata_contig6261:11486..117911691481419.540866-CDS-H-paniculata_contig6261:11486..11791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6261 11487..11791 +
1622930714.9991791-CDS-H-paniculata_contig6261:12192..124091622930714.9991791-CDS-H-paniculata_contig6261:12192..12409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6261 12193..12409 +
1691481419.5540173-CDS-H-paniculata_contig6261:12192..124091691481419.5540173-CDS-H-paniculata_contig6261:12192..12409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6261 12193..12409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6261.14021.1

>prot_H-paniculata_contig6261.14021.1 ID=prot_H-paniculata_contig6261.14021.1|Name=mRNA_H-paniculata_contig6261.14021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MLFAASLSMAERPSCGAIAFVPSRSWLPRAPHSLALVDSDHVSRQRATLH
YAVRRRALIYSAVAHGIEVSGEAGDCVQEDSALPPFEPKKVVIAKGKARL
FWDGNPLVYGGAVLRVEGKPAAGEVVDVVDSSGKFIAWGKTLPDSCRFVL
RSELRQSCFCNTLLLAYDCTALV*
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mRNA from alignment at H-paniculata_contig6261:11417..12549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6261.14021.1 ID=mRNA_H-paniculata_contig6261.14021.1|Name=mRNA_H-paniculata_contig6261.14021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1133bp|location=Sequence derived from alignment at H-paniculata_contig6261:11417..12549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAATAATGTTGTACTGACCGACACTGTACCGGTGAAATGGAAGCCCA
TACAGCGGCGAAGAAGCAACATGCTTTTTGCAGCATCATTGTCCATGGCA
GAGAGGCCAAGCTGTGGTGCGATCGCTTTTGTGCCCAGTCGGTCGTGGCT
TCCCCGCGCTCCCCATTCATTAGCGCTGGTCGACAGTGATCATGTTAGTC
GGCAACGAGCCACGCTGCACTATGCGGTCCGTAGGAGAGCGCTGATTTAC
TCTGCGGTAGCACACGGGATTGAGGTATCGGGAGAGGCAGGAGACTGTGT
ACAAGAAGATTCTGCGTTGCCACCCTTCGAACCCAAGAAAGTCGTTATCG
CGAAAGGGAAGGCCAGATTATTCTGGTATGATACGCCTACTTCTACCTGG
ACTGACTTTGCGAAATAGCAGACATCAGATACTTTCACATGTCGAGATAA
GACAGACAGTACAATACATGATTCAAATTGGGGTACAACTCGCTGGGTAC
TCCAGTGAGAGGATAGACATCCAGTTCTCCATTACTGCAGTGGAGTATAC
TGTCAGTTTTTGCCTGTGCCCGGGGCAGTACTTCAACAGGTTGATCGTTG
CTCTGGTTCAGTGGTGTCTCTAAATGGATCCTTGTCGTTAATGTCGATAT
TGTATGTAGTGTAGTATACTTTTGGATAGTACAGTACTGTGAAGAACACC
AACATAAACTTCTCATGTAGAGATGGGATTCTCCGACCCTTGACAGAGGT
GATCGCTTCCCACGCTTGCGACGTAGGGATGGTAACCCTTTGGTATATGG
TGGTGCTGTGTTGCGTGTGGAGGGAAAGCCAGCTGCCGGCGAGGTCGTGG
ATGTTGTTGACTCCAGCGGGAAGTTCATCGCTTGGGGTAAGACATTACCG
GATTCATGTCGATTCGTGCTCCGTTCAGAGCTCAGACAAAGTTGTTTCTG
CAACACTCTCCTGCTTGCATATGATTGCACTGCGCTGGTGTAAAACATTA
GTCTCGGTCAACTAAGTATGCTTGCTATTTAGTTTTAAAAGGTCGAGTAG
ATAGTTGACTCAAGTCCATGTGAACTCAAGCCAAGTTTCCCAGCGGCAAC
AGCAACAGGCCATAAATTTTCGCGCTGATGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig6261:11417..12549+

>mRNA_H-paniculata_contig6261.14021.1 ID=mRNA_H-paniculata_contig6261.14021.1|Name=mRNA_H-paniculata_contig6261.14021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig6261:11417..12549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTTTGCAGCATCATTGTCCATGGCAGAGAGGCCAAGCTGTGGTGC
GATCGCTTTTGTGCCCAGTCGGTCGTGGCTTCCCCGCGCTCCCCATTCAT
TAGCGCTGGTCGACAGTGATCATGTTAGTCGGCAACGAGCCACGCTGCAC
TATGCGGTCCGTAGGAGAGCGCTGATTTACTCTGCGGTAGCACACGGGAT
TGAGGTATCGGGAGAGGCAGGAGACTGTGTACAAGAAGATTCTGCGTTGC
CACCCTTCGAACCCAAGAAAGTCGTTATCGCGAAAGGGAAGGCCAGATTA
TTCTGATGCTTTTTGCAGCATCATTGTCCATGGCAGAGAGGCCAAGCTGT
GGTGCGATCGCTTTTGTGCCCAGTCGGTCGTGGCTTCCCCGCGCTCCCCA
TTCATTAGCGCTGGTCGACAGTGATCATGTTAGTCGGCAACGAGCCACGC
TGCACTATGCGGTCCGTAGGAGAGCGCTGATTTACTCTGCGGTAGCACAC
GGGATTGAGGTATCGGGAGAGGCAGGAGACTGTGTACAAGAAGATTCTGC
GTTGCCACCCTTCGAACCCAAGAAAGTCGTTATCGCGAAAGGGAAGGCCA
GATTATTCTGGGATGGTAACCCTTTGGTATATGGTGGTGCTGTGTTGCGT
GTGGAGGGAAAGCCAGCTGCCGGCGAGGTCGTGGATGTTGTTGACTCCAG
CGGGAAGTTCATCGCTTGGGGTAAGACATTACCGGATTCATGTCGATTCG
TGCTCCGTTCAGAGCTCAGACAAAGTTGTTTCTGCAACACTCTCCTGCTT
GCATATGATTGCACTGCGCTGGTGTAAGGATGGTAACCCTTTGGTATATG
GTGGTGCTGTGTTGCGTGTGGAGGGAAAGCCAGCTGCCGGCGAGGTCGTG
GATGTTGTTGACTCCAGCGGGAAGTTCATCGCTTGGGGTAAGACATTACC
GGATTCATGTCGATTCGTGCTCCGTTCAGAGCTCAGACAAAGTTGTTTCT
GCAACACTCTCCTGCTTGCATATGATTGCACTGCGCTGGTGTAA
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