mRNA_H-paniculata_contig6257.14016.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6257.14016.1
Unique NamemRNA_H-paniculata_contig6257.14016.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: D7FW81_ECTSI (Pantothenate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW81_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 2.000e-113
Identity = 188/318 (59.12%), Postives = 225/318 (70.75%), Query Frame = 2
Query:  161 VWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRT--AEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMPITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGDGKASAWVLHKAVVDSWEVEGSTPERMRDRIQYVAEVIHLGIASLAFG 1108
            +WL LMIGNSRLHWA+L RD V+E WD+ H+ +    EGP    ATS  +        EGIPLS +S           SRV +    GV        T      S C   +P RF+VASVVP+ELE WRRRC GI PI+S D +AG ++Y TLGVDRALAVRGAAR+ GWPV+V+DCGSALTFTA D  G+L GGAILPGVRLQLA LG+RTAQLPS+V LP++LP RWAM T GGIQAGVMWTIVAGI SFI+DRW+++ +ATV+FTGGDG+    VLH+AVVD WE EG    R+R+R+++V EVIH GIASL  G
Sbjct:    5 MWLCLMIGNSRLHWALLERDDVMEMWDTGHLRKDDGIEGPT---ATSGAVQ-------EGIPLSLMS-----------SRVGQTVDDGV------PPTGDGGNASTCYTADPRRFKVASVVPEELERWRRRCPGISPISSTDALAGVQEYPTLGVDRALAVRGAARMRGWPVLVIDCGSALTFTAADASGRLAGGAILPGVRLQLAVLGSRTAQLPSDVVLPDELPLRWAMGTSGGIQAGVMWTIVAGIHSFIKDRWKIDPDATVIFTGGDGQ----VLHRAVVDFWEAEGPDLVRVRNRLEFVREVIHWGIASLELG 291          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: UPI00145C75C2 (pantothenate kinase n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145C75C2)

HSP 1 Score: 169 bits (429), Expect = 8.040e-45
Identity = 115/276 (41.67%), Postives = 153/276 (55.43%), Query Frame = 2
Query:  155 DEVWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPT-SGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRR---CIGIMPITSHDV-IAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGD 967
               WL+LMIGNSRLHWA  + + ++ TWD+ ++            T N +  E+    EGI             QGD+     E T  G  E   S   +  D  +      P    +ASVVP +  LW+     CI    IT   V I G   Y+TLG+DRALA+ GA +V G+PV+V+D G+ALTFT  D    L GGAILPG+ LQLA L  RT QLP+ V  P+QLP R+A++TQ  +Q+GV++T+VAGI+ FIE  WR   +  +V TGGD
Sbjct:    4 SSFWLALMIGNSRLHWAHFIGETLIRTWDTNYMPANIVQKLSQSKTLNDLPPEILPPNEGIN-----------GQGDTGDHRSEETMEGRTEGEFSLTLSLSDSLNPLSPHLPIPLLLASVVPNQTALWQTYPNVCI----ITLEQVPIKGI--YSTLGIDRALALLGAGQVWGFPVLVIDAGTALTFTGADTNHCLVGGAILPGLGLQLATLAERTGQLPT-VESPQQLPQRYALNTQQAMQSGVIYTLVAGIKDFIEAWWRDFPQGKIVMTGGD 261          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: A0A8J6WUE7_9CYAN (Type III pantothenate kinase n=2 Tax=Trichocoleus sp. FACHB-262 TaxID=2692869 RepID=A0A8J6WUE7_9CYAN)

HSP 1 Score: 162 bits (409), Expect = 1.480e-42
Identity = 105/273 (38.46%), Postives = 148/273 (54.21%), Query Frame = 2
Query:  152 MDEVWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAE-GPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMPITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGD 967
            MD+ W +LMIGNSRLHWA  + D +   WDS H+  +    P  +G T                     K+A   ++G      RE               GE E S   +L  +   +ASVVP +  +W+     ++ I + + I     Y TLG+DRALA+ GA  V GWP +V+D G+ALTFT G+ E +L GGAILPG+ LQ+ +L  +TA LP+ +TLPE LP RWA  TQ  I +G+++T++AG+  FI+  W+    + VV TGGD
Sbjct:    1 MDKSWFALMIGNSRLHWAWFVGDQLQSAWDSEHLVSSGPPSPSILGGTL--------------------KTASPKIEG------RE---------------GE-ERSREDNLNNSPIVLASVVPAQTTIWQD--YPLLQILTLEQILLEHSYPTLGIDRALALWGAGEVYGWPALVIDAGTALTFTGGNAERQLVGGAILPGLSLQVRSLAQKTAALPA-ITLPETLPTRWANDTQEAIASGIIYTVLAGVMDFIQAWWQEFPGSAVVMTGGD 228          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: A0A433NMY3_CHLFR (Type III pantothenate kinase n=2 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A433NMY3_CHLFR)

HSP 1 Score: 161 bits (408), Expect = 1.560e-42
Identity = 101/272 (37.13%), Postives = 145/272 (53.31%), Query Frame = 2
Query:  161 VWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMP---ITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGD 967
            +WL+LMIGNSRLHW +   + + +TWD+ H+  ++     IG + + +   ++      PL   S      L                                          +ASVVPK+  LW+     I P   I + + +     Y TLG+DRALA+ GA +  G+P+++VD G+ALTFT  D    L GGAILPG+ LQLAAL  RT QLP NV LP+QLP R+A++TQ  +Q+GV++T++AGI+ F+E  WR   E+ +  TGGD
Sbjct:    1 MWLALMIGNSRLHWGLFEGETLCQTWDTNHLPESSLQQLAIGQSLDDLLKTISPSP---PLPLPSSXXXXXL------------------------------------------LASVVPKQTALWQ-----IYPNVRIITLEQVPLQGLYPTLGIDRALALWGAGKTWGFPMLIVDAGTALTFTGADANQNLNGGAILPGLSLQLAALANRTGQLP-NVELPQQLPQRFALTTQEAMQSGVIYTLLAGIKDFVEAWWRSYPESKIAITGGD 221          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: A0A8J7BAP4_9CYAN (Type III pantothenate kinase n=2 Tax=Trichocoleus sp. FACHB-591 TaxID=2692872 RepID=A0A8J7BAP4_9CYAN)

HSP 1 Score: 160 bits (406), Expect = 3.890e-42
Identity = 109/272 (40.07%), Postives = 149/272 (54.78%), Query Frame = 2
Query:  152 MDEVWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMPITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGD 967
            MD+ WL+LMIGNSRLHWA   RD +  TWDS H+  +     D  +  N          EGI L   S S+RE                     R+   + E+      +L+     +ASVVP ++ +W+      + I + + I     Y TLG+DRALA+ GA  V GWPV+V+D G+ALTFT G+ E +L GGAILPG+ LQ+ +L  +TA LP+ + LPE LP RWA  TQ  I +G+  T++AG+ +FIE  W     + VV TGGD
Sbjct:    1 MDKSWLALMIGNSRLHWAWFDRDQLQSTWDSEHLVNS-----DPPSPPNL---------EGI-LERASLSSRE---------------------RAVRRSREE------NLDELPIVLASVVPDQIAIWQG--YPHLQILTLEQILLEHSYPTLGIDRALALWGAGEVYGWPVLVIDAGTALTFTGGNTERQLVGGAILPGLSLQVRSLAQKTAALPA-IALPETLPTRWANDTQEAIASGITHTVLAGVVNFIEAWWEEFPGSAVVITGGD 227          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: UPI0013917CE5 (Pantothenate kinase n=4 Tax=Nostocaceae TaxID=1162 RepID=UPI0013917CE5)

HSP 1 Score: 159 bits (402), Expect = 2.030e-41
Identity = 102/271 (37.64%), Postives = 147/271 (54.24%), Query Frame = 2
Query:  155 DEVWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMPITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGD 967
            +++WL+L IGNSRLHWA+ + + +   WD+ H+  +         T + +  E+       PLS LS   RE++                            ETS+ L +      VASVVP++  LW+      + + + D +     Y TLG+DRALA+ GA +  G+P++V+D G+ALTFTA D    L GGAILPG+ LQ A LG +T QLP   T    LPPR+A++TQ  IQ+GV++T++AGI+ FIE  W L  E  +   GGD
Sbjct:   11 EKLWLALEIGNSRLHWALFIGETLECVWDTDHLPESVIQQMAQCRTLDDLPIEI------FPLSLLSGKQREIIA---------------------------ETSSYLPI-----FVASVVPQQTALWQN--YPHIRVITLDQVPLKGMYPTLGIDRALALWGAGKTWGFPMLVIDAGTALTFTAADANQCLVGGAILPGIGLQFATLGQKTGQLPLVETHNFTLPPRFALNTQEAIQSGVIYTLLAGIKDFIEAWWSLFPEGKIAIKGGD 241          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: UPI00168338B6 (pantothenate kinase n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI00168338B6)

HSP 1 Score: 157 bits (397), Expect = 3.750e-41
Identity = 102/274 (37.23%), Postives = 139/274 (50.73%), Query Frame = 2
Query:  146 LDMDEVWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMPITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGD 967
            + +D++WL LMIGNSRLHWA  + + + E WD+  + R  E P                                                          + +DE S  L+L       ASVVP +  LW+      + + + + I   + Y TLG+DRALAV GA    G+P +V+D G+ALTFT  D+   L GGAILPG++LQL +LG RTA LP  V LP QLP RWA ST   I++GV++T+++G+R FIE  W    E+ VV TGGD
Sbjct:    1 MSIDKIWLGLMIGNSRLHWARFIGETLQEAWDTEFVERRRETP----------------------------------------------------------SLQDEQSVPLYL-------ASVVPTQTALWQD--YPDVRVITLEQIPLRKLYPTLGIDRALAVLGAGETYGYPCLVIDAGTALTFTGVDENRCLVGGAILPGLKLQLESLGKRTAALPQ-VELPSQLPTRWAKSTPEAIESGVVYTVLSGMRDFIEAWWHSFPESRVVLTGGD 206          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: A0A846FKE9_9CYAN (Type III pantothenate kinase n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FKE9_9CYAN)

HSP 1 Score: 158 bits (399), Expect = 4.670e-41
Identity = 95/277 (34.30%), Postives = 142/277 (51.26%), Query Frame = 2
Query:  155 DEVWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWR---RRCIGIMPITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLP-SNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGDGK 973
            +  WL LMIGNSR HWA    D + ++WD+ H+                +   +T   +G   + L+    + L G                               L   P    +ASVVP + ELW+      +  + +   + I   + YAT+G+DRALA+ GA    GWP++V+DCG+ALT TA +++ +  GGAILPG++LQ  AL   TA LP S+++    LP RWAM+T   I++G+ +T +AGIR ++ED W    ++TVV TGGD +
Sbjct:    5 NRAWLGLMIGNSRWHWAWFRGDRLYQSWDTPHLSAVL------------LEQLITSSFQGGVWTELASVDPQALPG-------------------------------LDNAPVEICLASVVPSQTELWKPYSNLALLNLVVLKLEQIPIQDLYATIGIDRALALLGAGATRGWPILVIDCGTALTLTAANQQQQFVGGAILPGIKLQFQALAQNTAALPLSHLSERHSLPQRWAMTTSAAIRSGITYTTLAGIRDYVEDWWSTYPQSTVVLTGGDSR 238          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: A0A0C2MD90_9CYAN (Type III pantothenate kinase n=3 Tax=Scytonemataceae TaxID=1182 RepID=A0A0C2MD90_9CYAN)

HSP 1 Score: 157 bits (396), Expect = 1.300e-40
Identity = 111/294 (37.76%), Postives = 158/294 (53.74%), Query Frame = 2
Query:  161 VWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMP---ITSHDVIAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGDGKASAWVLHKA---VVDSWEVE 1024
            +WL+LMIGNSRLHWA    + ++  WD+ ++      P D+     Q++   T++   + +   +++  +   G+     +  +S +  P                        VASVVP +  LW+     I P   I S D +     Y TLG+DRALA+ GA    G+PV+V+D G+ALTFT  D    L GGAILPG+ LQLA L  RT QLP+ V LP+QLP R+A++TQ  +Q+GV++T+VAGI+ FIE  WR   +  VV TGGD +     L      +VDS  VE
Sbjct:    1 MWLALMIGNSRLHWAQFTGETLIYAWDTDYL------PADV---IQQLSQSQTLKDLLLKIFPSNEATGKARHGNMEDFLKTLSSFLPSPP---------------------VIVASVVPSQTALWQ-----IYPNVRILSLDQVPIKGMYPTLGIDRALALWGAGNNWGFPVLVIDAGTALTFTGADANQHLVGGAILPGLGLQLATLAERTGQLPT-VELPQQLPQRYALNTQEAMQSGVIYTLVAGIKDFIEAWWRDFPQGNVVVTGGDRELLVNYLQSQFPEIVDSLNVE 258          
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Match: UPI001ABB7F66 (pantothenate kinase n=1 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001ABB7F66)

HSP 1 Score: 156 bits (395), Expect = 1.580e-40
Identity = 109/270 (40.37%), Postives = 147/270 (54.44%), Query Frame = 2
Query:  161 VWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQIADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATAGEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMPITSHDV-IAGTEKYATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILPGVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGIRSFIEDRWRLESEATVVFTGGD 967
            +WL LMIGNSRLHW+  +   ++  WD+ ++           A   Q+A   T+E     +    +  R++  G    +T  P                 E    L+L       ASVVP E  LW+     +  IT   V + G   Y TLG+DRALA+ GA +   +PV+V+D G+ALTFT  D +  L GGAILPG  LQ A LG RT QLP NVTLP+QLP R+A++TQ  I +GV++TIVAG++ FI+  W L +E  VV TGGD
Sbjct:    1 MWLGLMIGNSRLHWSWFVDKAIVCAWDTDYLPE---------AVIEQLAKSQTLEDLPPEIFLPIQRGRDI--GTEKLITTTP-----------------EFPLPLYL-------ASVVPSETRLWQTYP-NVQLITLEQVPLEGM--YPTLGIDRALALWGAGQNWSFPVLVIDAGTALTFTGADSKRCLVGGAILPGFGLQFATLGGRTGQLP-NVTLPQQLPKRYALNTQEAIHSGVIYTIVAGVKDFIQAWWELFAEGNVVVTGGD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6257.14016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW81_ECTSI2.000e-11359.12Pantothenate kinase n=1 Tax=Ectocarpus siliculosus... [more]
UPI00145C75C28.040e-4541.67pantothenate kinase n=1 Tax=Brasilonema sp. UFV-L1... [more]
A0A8J6WUE7_9CYAN1.480e-4238.46Type III pantothenate kinase n=2 Tax=Trichocoleus ... [more]
A0A433NMY3_CHLFR1.560e-4237.13Type III pantothenate kinase n=2 Tax=Chlorogloeops... [more]
A0A8J7BAP4_9CYAN3.890e-4240.07Type III pantothenate kinase n=2 Tax=Trichocoleus ... [more]
UPI0013917CE52.030e-4137.64Pantothenate kinase n=4 Tax=Nostocaceae TaxID=1162... [more]
UPI00168338B63.750e-4137.23pantothenate kinase n=1 Tax=Microcoleus sp. FACHB-... [more]
A0A846FKE9_9CYAN4.670e-4134.30Type III pantothenate kinase n=1 Tax=Cyanothece sp... [more]
A0A0C2MD90_9CYAN1.300e-4037.76Type III pantothenate kinase n=3 Tax=Scytonematace... [more]
UPI001ABB7F661.580e-4040.37pantothenate kinase n=1 Tax=Aetokthonos hydrillico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6257contigH-paniculata_contig6257:6621..11973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.5
Seed ortholog evalue8.3e-94
Seed eggNOG ortholog2880.D7FW81
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Type III pantothenate kinase
EggNOG OGs2SGJP@2759,COG1521@1
Ec32 ortholog descriptionType III pantothenate kinase
Ec32 orthologEc-01_003730.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1534
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6257.14016.1prot_H-paniculata_contig6257.14016.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6257 6772..11556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.3615136-UTR-H-paniculata_contig6257:6620..67711622930714.3615136-UTR-H-paniculata_contig6257:6620..6771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6257 6621..6771 +
1691481419.2484276-UTR-H-paniculata_contig6257:6620..67711691481419.2484276-UTR-H-paniculata_contig6257:6620..6771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6257 6621..6771 +
1622930714.4669564-UTR-H-paniculata_contig6257:11556..119731622930714.4669564-UTR-H-paniculata_contig6257:11556..11973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6257 11557..11973 +
1691481419.3238976-UTR-H-paniculata_contig6257:11556..119731691481419.3238976-UTR-H-paniculata_contig6257:11556..11973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6257 11557..11973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.376228-CDS-H-paniculata_contig6257:6771..68091622930714.376228-CDS-H-paniculata_contig6257:6771..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 6772..6809 +
1691481419.2714307-CDS-H-paniculata_contig6257:6771..68091691481419.2714307-CDS-H-paniculata_contig6257:6771..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 6772..6809 +
1622930714.390359-CDS-H-paniculata_contig6257:8612..88321622930714.390359-CDS-H-paniculata_contig6257:8612..8832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 8613..8832 +
1691481419.281595-CDS-H-paniculata_contig6257:8612..88321691481419.281595-CDS-H-paniculata_contig6257:8612..8832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 8613..8832 +
1622930714.404373-CDS-H-paniculata_contig6257:9203..94511622930714.404373-CDS-H-paniculata_contig6257:9203..9451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 9204..9451 +
1691481419.290073-CDS-H-paniculata_contig6257:9203..94511691481419.290073-CDS-H-paniculata_contig6257:9203..9451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 9204..9451 +
1622930714.4157095-CDS-H-paniculata_contig6257:9838..100181622930714.4157095-CDS-H-paniculata_contig6257:9838..10018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 9839..10018 +
1691481419.2984216-CDS-H-paniculata_contig6257:9838..100181691481419.2984216-CDS-H-paniculata_contig6257:9838..10018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 9839..10018 +
1622930714.4286692-CDS-H-paniculata_contig6257:10483..106311622930714.4286692-CDS-H-paniculata_contig6257:10483..10631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 10484..10631 +
1691481419.3066945-CDS-H-paniculata_contig6257:10483..106311691481419.3066945-CDS-H-paniculata_contig6257:10483..10631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 10484..10631 +
1622930714.4471061-CDS-H-paniculata_contig6257:11424..115561622930714.4471061-CDS-H-paniculata_contig6257:11424..11556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 11425..11556 +
1691481419.3151689-CDS-H-paniculata_contig6257:11424..115561691481419.3151689-CDS-H-paniculata_contig6257:11424..11556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6257 11425..11556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6257.14016.1

>prot_H-paniculata_contig6257.14016.1 ID=prot_H-paniculata_contig6257.14016.1|Name=mRNA_H-paniculata_contig6257.14016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=322bp
MDEVWLSLMIGNSRLHWAVLLRDHVLETWDSRHIGRTAEGPFDIGATSNQ
IADEVTVEGEGIPLSFLSKSARELLQGDSSRVTREPTSGVGEPARSTATA
GEDETSACLHLEPNRFRVASVVPKELELWRRRCIGIMPITSHDVIAGTEK
YATLGVDRALAVRGAARVGGWPVMVVDCGSALTFTAGDKEGKLGGGAILP
GVRLQLAALGTRTAQLPSNVTLPEQLPPRWAMSTQGGIQAGVMWTIVAGI
RSFIEDRWRLESEATVVFTGGDGKASAWVLHKAVVDSWEVEGSTPERMRD
RIQYVAEVIHLGIASLAFGPV*
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mRNA from alignment at H-paniculata_contig6257:6621..11973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6257.14016.1 ID=mRNA_H-paniculata_contig6257.14016.1|Name=mRNA_H-paniculata_contig6257.14016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5353bp|location=Sequence derived from alignment at H-paniculata_contig6257:6621..11973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGACATTACCCACGGATGCAGCACGGCAGACGGTAGTTGATGCTGACCC GCTAAGTCTCCAACGAAAAAAATAACGTGCGACGCGGGAATCCATCAGGC ATTTTATTTGGAAGCCTAGCCGTCTGCTGCTGACTAACTACCACATTGGA CATGGATGAGGTGTGGCTCAGCCTCATGATCGGAAACAGGTAACAATGTT CACACTGGAGCAGAAACAACGCCGGGGTTCAGGCCAGACGGTAGTAGCAA GGGTGGACTGACTGCGTGCAGCAACATAGTTAACACAATATATGTATATA CATTGTAAAGCGCGAGAGAGAGTTCCCTTTGCCAGTCAATGCTGTTAAAC TTTATGCTGCTGGGCTGACCCGTCCTCTGTTCCTCCTCGGTTGCTAATTT TCATCTCATGTCAAAAATCGAAACAAATTAAACGGTTACATTTTCGGAAT AGAACTCGGAACGATTCAAATAAAGTTCGGAATCGAAGAACTTCAGGGCG AAACAGATAAACGCCGGTAGCGGGTCGCCTGCTTGCCCAAATAAACTTGA ACCTTCGGGCAAGAACTCCGTACCTGACGATATTTTTCGGATGCCGTTTT TGAGACGTCGGTTACGCTGTGACGCTTCAGAAAGTGCATACACAAGCACA GGGAGACAACAGAACAATATTCAGAAAACGTCAGTACAAAACAGGCAACA GATGTCATGGATCACATTTGGTAAATCCAACTTCACCGAAAGAGCAAGAT AGGCATGACGCAAGATTATCATCATAGCTCTGGGGCGTTGTAGTGGCTGG GCTCCGCTTCACACTCGTGCTTGTGCAGCAGCGTGTTAGGGCTGTTGGCC CCATCATGTTGATATTTTTACGTTCATAAAGGACAAAGAAGGAAAGCCAA GCAACCAGAAATATGCGCGCGATTCCAACTGGCGAATAACGAAAGACAGT AGTCCTGCGAGACATTAGCCATTAAATCGTCTGTCGACGATATACCTCAT TCCAATCTTGTGCAATTTAGGGTGTCTACTGGCTAGCTGCTGCTCCTGTT TGTCCCTTTTGGCGTGTCCACATTTGTTTATTTTTTATATGATAAGCTAC AACCAACACAGAGCAACGGCAAAAAAAGAAGGACCCTAGTCTCGCGAGAT CCCAGCTCTTAGACTGTCGGTCATATCGCATCTGCCTTGCTTGTATCTGT CGGGTTTCTAGTCCTGGATGTTGTGCCCCCTTGCTGTCATGTCTACTGTT TGACTAACACTAAACAATGTGTATTTAGTAGAAGTTAGGATGGCTTTTTT CTTTACGATGAAACGTGTCTTCCACCATTTTCCCGATATTACGCGCCGAA TCACGACTCGAACAGAGTCAGTGAAACTACATGGCATCAGTGTTGGTTGG GTGTTGGTGTTTTTCATGTTGGATCCTCTGCTCTCGTGATATGGGCATTC AAAGCAACCACCTAGTAGCCGTTCACGGTTCCCCTTGATTCTTCTGTTTT GCCCTATATCTTGAGATTCCCTTATCTATAGAAGTGAAGAATATCTCAAG CTCATTAGGTTTTGGGGATGGGGTATATGGCGCAAGTTTTAACTGAACTA TTTCCATCCTAAAGAAAAAAGCCAGCCTAAATTCCTAGTACACAGTGTTA ATAATTGTTTAAACTTGTGGAAGTAGACCGACTGTGACAATTTGTTTCAT AATTTAGGACATGCAGCCAATCAGCGCAACATGCCTAAGCACGCCATACC GGGTCCCGTTCGGAGCTTTTGCACCGTTATGATTACGGGGCAGGGCAGCG GTGCGGGGTTGCTTGGCGATTTTTTTCGTGTTAGCTCGAATACATTTATA CTTTTCTAGAACTGTTCGTCTAACGCACTGTTGCTGCTATAGCACTGCAA TAAACCTGCTTTCATTCCGGCATGCAGGGGAGGCTGAAGCTTGTTATTTC GTCTTCACGTTGTATTCTATTACATCTTCCAACGAGGCGCAGCCGACTAC ATTGGGCTGTGCTTCTCAGAGACCACGTGCTAGAAACCTGGGATTCGAGG CACATTGGCAGAACTGCGGAGGGGCCATTCGATATCGGAGCAACTTCCAA CCAAATCGCAGACGAAGTGACGGTCGAGGGAGAAGGAATACCGCTGTCTT TCTTGTCGAAGTCGGCGCGAGAGTTGTTGCAAGGCGACAGCTCAAGAGTA ACACGTGAACCTGTGAGAGATATGCACCTTGAAAGATTGCGGAGATAACA TGTATCCACTGGCGTGTACAGATATATAAATATTGCGAATAGAAAACTTG ATGTTTGTATGCACTTCGTTTCTTTGCAAACAATGCTATGATGACAACCA ACTCAAGGTCTGCTGCTGTACTAGAACTCTATGTAGCACATATGATACGG ACAAGAGATGAAGCCACTTGCATGCGATGACCGTATCTAACGTATGGGTT TTCGAGGTCAACAACATCGCGCGCTCGGTCTTGTAACCCACATAATTGTT CATGTTGAATCGCTGTATTCTCATATCTCGCTGAATATTCTAAACCTATT TGTTGGGTATCTCGATCATTGCTCGTTTGTCAGACAAGTGGTGTCGGAGA ACCAGCACGATCGACGGCAACGGCCGGCGAAGACGAAACAAGCGCGTGTC TACACCTCGAGCCCAATCGATTTAGGGTAGCATCGGTCGTTCCGAAGGAG CTAGAACTGTGGCGGCGGCGATGCATAGGCATCATGCCTATCACATCTCA CGACGTCATCGCCGGGACGGAGAAATACGCAACACTTGGCGTGGACAGAG CATTGGCTGTGCGGGGGGCTGCACGCGTGGGGTGACTATATTGTTCCTAG TCCTTCAGTTTGACAAAGCCTTAAGATTTATGTAATGCTTTGTCCCATGA TGAACCAACTGGACGAAACTTGAATTTGGTCGTTGCTGTTTTTCACGCGC CAATTCCTGGCGCTCCATCTATACATGGCACCCGCCCGATTGTGGTATTT TGGCAGGTATATGCGGCCATCGCTGACTCCTTCGTGAGGAAAGGCTTGCA ACTGATGCCTTGGTCAGAAAACAGTTGAGTGTCGGAAAAGTTCTTATTTG TGTGATGAATTTATCTCTTTTGAAGCATTATGTTTATCTCTATTATCTAC TATAAGACTTTTGAATCGTCGCGGCGTGATCTTTCTGTCTTAACCAATCG TGGACTATGCCATGCCAGTGGATGGCCGGTGATGGTGGTGGACTGCGGCA GCGCCCTAACGTTCACGGCGGGCGACAAGGAGGGTAAGCTTGGCGGTGGG GCAATCCTTCCGGGGGTACGGTTACAGCTGGCGGCGCTGGGAACACGAAC GGCACAGTTGCCCTCTAATGTTACATTGCCGGAACAGCTGCCGCCTAGGT AAATACTTGTTGCCGGTTCTGATTATTTGCTGGTATTTCCTCATGTTAAT TTGTGTTGGGTACTACCATTGTTCATGCAGTGAGCACGTGGGCACGAGAA TAGGACGAGAAGCTATACAAACGTTGCGGTACCGTGGTGTCCAATGGTAC ATATTGGAAGGTTCAATGGTACATATTGGAATGCACAGGACATAGTCTCC CCCCAGAGCTCTCTCTACCACAGAGTTGACATTGTCTGTTTAAATCAAGC ATGGTTCGATAAGTTGGAGACATAAATAAAACCCGTTTTTCCTATCCAAT AATTGATATACGCATGTGACACGTTGCTGCTGCACTGCAATTAAACTATT GAAAAAGAGAACGGAGCTGTGTGCCACCTGCCAATATTTCATGTCAGAAG ACCAGTTTAGCAATTCCTGCCCATTACCGGGTGTGCCACGCGCGTTTACT ATGCCGATCGTAGGTGGGCTATGAGCACACAGGGAGGCATCCAGGCAGGG GTAATGTGGACAATCGTAGCGGGAATTCGGAGCTTCATAGAGGATCGGTG GAGACTCGAGTCGGAGGCCACGGTTGTCTTCACGGGCGGTGACGGAAAGG CGAGTGCGTGGGTTTTGCAGCCTGCACACACTAAACACCCCCCAAATGAA TCTGAATCCTTGGGATATTACATCTTAGATGAAATTCAAAACATACATTC GGTCTGAATTTCAACATGTGCGTTTTAAAACACGGAATGTAAAATATTGA CCGTCTGTTTATGCGGTTTACACTATTATGTGGAGCCGTCATTGATCGGT CCAGGGCTCATAGAATAGGCGTGTGCTCATGTCGAACCTTTAGGCGAATA TTTTAAATATTCATTTGAAATCATTCTCAATATTCGAAGCATTCGAGTTC GTCCCGGGGGTGCAGTATCGTTGTTGCCTCCCCCCCATTTTGTTCACCAC GCGTGGGTAAATCGATCTGATTAGATCAAATTAAAAAAATACATGTAGAA CTGAAGTTGCGGGATCCCACTTTCTCGCCCCCACATATCATGTGCAACAA ATATACGGGTATACATAGACGGATTAAGAAATTAGATGTAGCTATCCTTC ACTACCTCAAGGGACCATCAGTCTTGGTGGAATTCTAAAAGGTGCCGTGG GTTTGCTTGCCAGCCGGAGCGACAAAGAGTGAATTTTCATCGATTTGTAC TATCAGTTGTTGCGAGATCGACAAAACATAAGGCTTGAAGTCTGGCGGTA AGTGGCTCATGTGGAGGATATATGTGCTAGAGGCTAGAATCACGACCGGC GTACTTGCATGGGGAAAAAACCTTATATTCGAGGCGCGGAAGCTTAGTCC AATGCGTTGTGCTGTTCGTGTCTGGGGTTCCTATTTTTGCTTGGTGTGCA CCAGGTCCTTCATAAGGCAGTTGTGGACTCGTGGGAAGTCGAAGGGTCAA CTCCAGAGCGGATGCGTGATCGGATCCAATACGTGGCGGAAGTGATCCAT TTGGGCATCGCCAGCCTTGCTTTCGGACCCGTTTAACATCTCTCGAACGT TCCCTGTTGTGCATGATACGCTGCTGTACATGGAAAGAAAAAAAACAAGA ATGTGGCAAACGTGTAGATACGGCGCAGGACAGAAGATGCGATAGAAGGA CGGTATGCATGATGGACTCTTGTTGTCGCCGCTGTACTAAGTCATGTTAA GGGTGCGTAATGCAGCTCATTCGGGTGCGCTCGTCCTCGAGCGACTATGT TGTCGTACGGCTGATTTCGTGGACGAAGAAAGCGGGGTCTACCTTTTTCT GAACATCTTGTCGTGATGCTCTAACGAACAAGAGTTTACCGCTTGCAAAG CGTTTTGGGTTTTTTGTAGGGGTGCTTACAATGATGGGAGGTGTCATGAA CACACAGGGCACATACAAAAAGCTGTTCCAATATGAGGTAAAAATGCCGA CGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6257:6621..11973+

>mRNA_H-paniculata_contig6257.14016.1 ID=mRNA_H-paniculata_contig6257.14016.1|Name=mRNA_H-paniculata_contig6257.14016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig6257:6621..11973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGGTGTGGCTCAGCCTCATGATCGGAAACAGATGGATGAGGTG
TGGCTCAGCCTCATGATCGGAAACAGCCGACTACATTGGGCTGTGCTTCT
CAGAGACCACGTGCTAGAAACCTGGGATTCGAGGCACATTGGCAGAACTG
CGGAGGGGCCATTCGATATCGGAGCAACTTCCAACCAAATCGCAGACGAA
GTGACGGTCGAGGGAGAAGGAATACCGCTGTCTTTCTTGTCGAAGTCGGC
GCGAGAGTTGTTGCAAGGCGACAGCTCAAGAGTAACACGTGAACCTCCGA
CTACATTGGGCTGTGCTTCTCAGAGACCACGTGCTAGAAACCTGGGATTC
GAGGCACATTGGCAGAACTGCGGAGGGGCCATTCGATATCGGAGCAACTT
CCAACCAAATCGCAGACGAAGTGACGGTCGAGGGAGAAGGAATACCGCTG
TCTTTCTTGTCGAAGTCGGCGCGAGAGTTGTTGCAAGGCGACAGCTCAAG
AGTAACACGTGAACCTACAAGTGGTGTCGGAGAACCAGCACGATCGACGG
CAACGGCCGGCGAAGACGAAACAAGCGCGTGTCTACACCTCGAGCCCAAT
CGATTTAGGGTAGCATCGGTCGTTCCGAAGGAGCTAGAACTGTGGCGGCG
GCGATGCATAGGCATCATGCCTATCACATCTCACGACGTCATCGCCGGGA
CGGAGAAATACGCAACACTTGGCGTGGACAGAGCATTGGCTGTGCGGGGG
GCTGCACGCGTGGGACAAGTGGTGTCGGAGAACCAGCACGATCGACGGCA
ACGGCCGGCGAAGACGAAACAAGCGCGTGTCTACACCTCGAGCCCAATCG
ATTTAGGGTAGCATCGGTCGTTCCGAAGGAGCTAGAACTGTGGCGGCGGC
GATGCATAGGCATCATGCCTATCACATCTCACGACGTCATCGCCGGGACG
GAGAAATACGCAACACTTGGCGTGGACAGAGCATTGGCTGTGCGGGGGGC
TGCACGCGTGGGTGGATGGCCGGTGATGGTGGTGGACTGCGGCAGCGCCC
TAACGTTCACGGCGGGCGACAAGGAGGGTAAGCTTGGCGGTGGGGCAATC
CTTCCGGGGGTACGGTTACAGCTGGCGGCGCTGGGAACACGAACGGCACA
GTTGCCCTCTAATGTTACATTGCCGGAACAGCTGCCGCCTAGTGGATGGC
CGGTGATGGTGGTGGACTGCGGCAGCGCCCTAACGTTCACGGCGGGCGAC
AAGGAGGGTAAGCTTGGCGGTGGGGCAATCCTTCCGGGGGTACGGTTACA
GCTGGCGGCGCTGGGAACACGAACGGCACAGTTGCCCTCTAATGTTACAT
TGCCGGAACAGCTGCCGCCTAGGTGGGCTATGAGCACACAGGGAGGCATC
CAGGCAGGGGTAATGTGGACAATCGTAGCGGGAATTCGGAGCTTCATAGA
GGATCGGTGGAGACTCGAGTCGGAGGCCACGGTTGTCTTCACGGGCGGTG
ACGGAAAGGCGAGTGCGTGGGTGGGCTATGAGCACACAGGGAGGCATCCA
GGCAGGGGTAATGTGGACAATCGTAGCGGGAATTCGGAGCTTCATAGAGG
ATCGGTGGAGACTCGAGTCGGAGGCCACGGTTGTCTTCACGGGCGGTGAC
GGAAAGGCGAGTGCGTGGGTCCTTCATAAGGCAGTTGTGGACTCGTGGGA
AGTCGAAGGGTCAACTCCAGAGCGGATGCGTGATCGGATCCAATACGTGG
CGGAAGTGATCCATTTGGGCATCGCCAGCCTTGCTTTCGGACCCGTTTAA
GTCCTTCATAAGGCAGTTGTGGACTCGTGGGAAGTCGAAGGGTCAACTCC
AGAGCGGATGCGTGATCGGATCCAATACGTGGCGGAAGTGATCCATTTGG
GCATCGCCAGCCTTGCTTTCGGACCCGTTTAA
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