mRNA_H-paniculata_contig6257.14015.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6257.14015.1 vs. uniprot
Match: A0A6H5L4Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.250e-18 Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 955 VAKAVEANDSLGCLLYDGNHLNVDVLAEVEYSMSRAKRSVRALLEQVRHALPNVRLAHHFGESHKTVHSSCRSQLPSRREGGGDALPSVQLAPGQETSVAVAMGRRDNIIGSISV 1299
+A+AVEAN++LG LL NHL+ D L E++Y+M+R KR VR L+ QV+ ++ K V + ++++ GG PSVQLAPGQETS+ V+ GR+DNIIGSI V
Sbjct: 1 MAQAVEANNTLGILLCQDNHLSADTLIEIDYAMARPKRPVRDLVGQVQRSIDTQNFLS------KGVETGQQTKVAGVPHGGE---PSVQLAPGQETSIQVSFGRKDNIIGSIPV 106
BLAST of mRNA_H-paniculata_contig6257.14015.1 vs. uniprot
Match: A0A4X2LCH0_VOMUR (NACHT domain-containing protein n=6 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2LCH0_VOMUR) HSP 1 Score: 58.5 bits (140), Expect = 2.810e-5 Identity = 50/151 (33.11%), Postives = 74/151 (49.01%), Query Frame = 1
Query: 34 ENLTTLNLASSDLGVAGVAALAAALRASFSIASVDCSGNSRLGDEGVALLTPALLTDGMGASTIRELNLVRCSVGDPGATALAKALPGNSVLEQLKLSGNFIGDAGAVGIMNSLLGLTKGFLTHLWLGSNRIGSKGAEAMAIALAKSPMLQ 486
+NL L L S+ +G G +L AL SI V N + EG+ L+ LL +R++NL C + D LA +L LE++ L+ N +G+ GA + L + + L L L N+IGS GA+ +A LAK P +Q
Sbjct: 1728 QNLKVLYLCSNQIGTEGTLSLGQALARCQSIEEVSLEEN--IFAEGILPLSKGLLK-------LRKINLTSCKINDQMTKPLASSLVLCHDLEEILLAWNSLGNEGATELARVLPQMNQ--LKKLDLEGNQIGSLGAQLLAKGLAKGPGIQ 1867
BLAST of mRNA_H-paniculata_contig6257.14015.1 vs. uniprot
Match: UPI00201451D1 (NACHT, LRR and PYD domains-containing protein 12-like isoform X1 n=5 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI00201451D1) HSP 1 Score: 57.0 bits (136), Expect = 7.740e-5 Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = 1
Query: 82 GVAALAAALRASFSIASVDCSGNSRLGDEGVALLTPALLTDGMGASTIRELNLVRCSVGDPGATALAKALPGNSVLEQLKLSGNFIGDAGAVGIMNSLLGLTKGFLTHLWLGSNRIGSKGAEAMAIALAKSPMLQEL 492
G AAL ++LR++ + +D + N ++GDEG+ LL+ L + +L L RC++ D G LA AL NS L +L LS N IG G +++ L L L L I +G +A AL + L+EL
Sbjct: 753 GCAALTSSLRSNSLLRELDLTWN-KIGDEGLTLLSDGLKDP---HCKLEKLTLCRCNITDEGCAVLASALRSNSHLRELDLSNNIIGGEGLT-LLSDGLKDPHCKLEKLTLCRCNITDEGCAVLASALRSNSHLREL 884 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6257.14015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6257.14015.1 >prot_H-paniculata_contig6257.14015.1 ID=prot_H-paniculata_contig6257.14015.1|Name=mRNA_H-paniculata_contig6257.14015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=498bp VQELSREWGKDENLTTLNLASSDLGVAGVAALAAALRASFSIASVDCSGNback to top mRNA from alignment at H-paniculata_contig6257:516..5726- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6257.14015.1 ID=mRNA_H-paniculata_contig6257.14015.1|Name=mRNA_H-paniculata_contig6257.14015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5211bp|location=Sequence derived from alignment at H-paniculata_contig6257:516..5726- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6257:516..5726- >mRNA_H-paniculata_contig6257.14015.1 ID=mRNA_H-paniculata_contig6257.14015.1|Name=mRNA_H-paniculata_contig6257.14015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at H-paniculata_contig6257:516..5726- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |