mRNA_H-paniculata_contig62104.13952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62104.13952.1
Unique NamemRNA_H-paniculata_contig62104.13952.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62104.13952.1 vs. uniprot
Match: UPI00063AEE8E (uncharacterized protein LOC105793376 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AEE8E)

HSP 1 Score: 50.4 bits (119), Expect = 9.880e-5
Identity = 32/96 (33.33%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:    7 SSKSRIHWIIDSGCNGHHLIPQRDLFQIFRQVVRSPIASAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYVPEASDSILSVERMVSQGMEAYF 294
            SSK    W+IDSGC  HH+     +F+       S +   G GEL ++ +G  + +I T  G   I  C+V YVP+   ++LSV +++ +G    F
Sbjct:  150 SSKVNKIWLIDSGCT-HHIASDESMFKELDTSFESKVG-IGNGEL-LKARGKGKAVICTKLGIKTI--CEVLYVPDIDQNLLSVGQLLEKGYSLLF 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62104.13952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00063AEE8E9.880e-533.33uncharacterized protein LOC105793376 n=1 Tax=Gossy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62104contigH-paniculata_contig62104:6..383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.9960103-CDS-H-paniculata_contig62104:5..3831622930706.9960103-CDS-H-paniculata_contig62104:5..383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62104 6..383 -
1691481415.839838-CDS-H-paniculata_contig62104:5..3831691481415.839838-CDS-H-paniculata_contig62104:5..383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62104 6..383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62104.13952.1prot_H-paniculata_contig62104.13952.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62104 6..383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62104.13952.1

>prot_H-paniculata_contig62104.13952.1 ID=prot_H-paniculata_contig62104.13952.1|Name=mRNA_H-paniculata_contig62104.13952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MESSKSRIHWIIDSGCNGHHLIPQRDLFQIFRQVVRSPIASAGKGELNVE
GQGDVEGLIWTAEGAVRIIFCDVFYVPEASDSILSVERMVSQGMEAYFGS
ERRRLYYNGITIPFEHTSRKEYSLRM
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mRNA from alignment at H-paniculata_contig62104:6..383-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62104.13952.1 ID=mRNA_H-paniculata_contig62104.13952.1|Name=mRNA_H-paniculata_contig62104.13952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig62104:6..383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTAAATCACGCATACACTGGATAATTGATTCGGGCTGCAA
CGGGCATCACCTGATCCCGCAACGCGACCTCTTCCAAATTTTTCGCCAGG
TCGTACGTAGTCCCATTGCCTCAGCGGGCAAGGGGGAATTGAATGTAGAG
GGGCAAGGAGACGTGGAGGGTTTGATTTGGACTGCGGAAGGAGCCGTGCG
CATCATCTTCTGCGATGTATTTTATGTACCTGAAGCATCAGACAGTATTT
TATCAGTGGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCG
GAACGGAGACGGTTGTATTACAATGGGATAACGATTCCGTTCGAACACAC
ATCGCGCAAGGAGTATTCATTACGTATG
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Coding sequence (CDS) from alignment at H-paniculata_contig62104:6..383-

>mRNA_H-paniculata_contig62104.13952.1 ID=mRNA_H-paniculata_contig62104.13952.1|Name=mRNA_H-paniculata_contig62104.13952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig62104:6..383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTAAATCACGCATACACTGGATAATTGATTCGGGCTGCAA
CGGGCATCACCTGATCCCGCAACGCGACCTCTTCCAAATTTTTCGCCAGG
TCGTACGTAGTCCCATTGCCTCAGCGGGCAAGGGGGAATTGAATGTAGAG
GGGCAAGGAGACGTGGAGGGTTTGATTTGGACTGCGGAAGGAGCCGTGCG
CATCATCTTCTGCGATGTATTTTATGTACCTGAAGCATCAGACAGTATTT
TATCAGTGGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCG
GAACGGAGACGGTTGTATTACAATGGGATAACGATTCCGTTCGAACACAC
ATCGCGCAAGGAGTATTCATTACGTATGATGGAGTCATCTAAATCACGCA
TACACTGGATAATTGATTCGGGCTGCAACGGGCATCACCTGATCCCGCAA
CGCGACCTCTTCCAAATTTTTCGCCAGGTCGTACGTAGTCCCATTGCCTC
AGCGGGCAAGGGGGAATTGAATGTAGAGGGGCAAGGAGACGTGGAGGGTT
TGATTTGGACTGCGGAAGGAGCCGTGCGCATCATCTTCTGCGATGTATTT
TATGTACCTGAAGCATCAGACAGTATTTTATCAGTGGAGCGGATGGTGAG
CCAAGGGATGGAGGCGTATTTTGGTTCGGAACGGAGACGGTTGTATTACA
ATGGGATAACGATTCCGTTCGAACACACATCGCGCAAGGAGTATTCATTA
CGTATG
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