mRNA_H-paniculata_contig62.13932.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI) HSP 1 Score: 213 bits (541), Expect = 2.860e-68 Identity = 105/134 (78.36%), Postives = 117/134 (87.31%), Query Frame = 1
Query: 1 GMFVRDACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLGEG 402
G+ + ++TLD SDEFRIKMTEQ L KLF++G+ NT SLAK+E +VS+FCRRRLPVVMVRLKMSETL EA TYIEQGHVRVGPHA+TDPAFLVTRSMEDFVTWVDGSKIKRAIK YEDK+DDFDLLGEG
Sbjct: 51 GLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA) HSP 1 Score: 184 bits (468), Expect = 3.620e-57 Identity = 91/128 (71.09%), Postives = 106/128 (82.81%), Query Frame = 1
Query: 19 ACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLGEG 402
A ++TL +D FR+KMT Q L+KL S+GV +T SL K+E +TVSAFCRRRLPVVMVR KMSETL+EA T+IE GH+RVGP+ +TDPAFLVTR+MEDFVTWVD SKIKR I Y DKLDDFDLLGEG
Sbjct: 57 AAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCRRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK) HSP 1 Score: 179 bits (455), Expect = 3.320e-55 Identity = 88/123 (71.54%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 28 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 396
++ L P+D+FRIKMTE L KLF++GV N+ SL E V VSAFCRRRLPVVMVRLKMSET+KEA T+IE GHVRVGPH +TDPAFLV R+MEDF+TWVD SKIKR I Y DKLDD+DLLG
Sbjct: 60 LRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCRRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA) HSP 1 Score: 174 bits (441), Expect = 4.450e-53 Identity = 84/123 (68.29%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 28 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 396
++ L P DEFRIKMT+ L+KL+++G+ T SL++ E + SAFCRRRLPVVMVR+KM+ETLKEA T+IEQGHVRVGP +TDP FLVTRS EDF+TWVD SKIKRA+ Y DKLDDFDLLG
Sbjct: 60 LKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A7S1VV42_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV42_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.190e-52 Identity = 83/131 (63.36%), Postives = 103/131 (78.63%), Query Frame = 1
Query: 1 GMFVRDACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLL 393
GM + A ++TL D FRI MT+Q L KLF +G+ T SL K+E +T SA CRRR+PVVMVR+KM+ET+K A T++EQGHVRVGPH +TDPAFLVT +MED+VTWVD SKI+RA++ Y DKLDDFDLL
Sbjct: 51 GMVTKLAAKLKTLKQDDPFRIAMTDQLLQKLFDMGLITTKKSLLKAEELTASALCRRRIPVVMVRMKMAETVKAAVTFVEQGHVRVGPHVVTDPAFLVTITMEDYVTWVDSSKIRRAVQKYNDKLDDFDLL 181
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: K3XB78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB78_GLOUD) HSP 1 Score: 172 bits (435), Expect = 3.620e-52 Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 1
Query: 49 DEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 396
D FRIK TE L KLF++G+ T SL K+E V VSAFCRRRLPVVMVR+KM+E +KEAAT++EQGHVRVGP +TDPA+LVTRSMEDFVTWVD SKIKR I Y DKLDD+DLLG
Sbjct: 67 DPFRIKTTEALLEKLFNMGLIQTKKSLMKAEEVNVSAFCRRRLPVVMVRVKMAENIKEAATFVEQGHVRVGPSVVTDPAYLVTRSMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 182
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A7S3HSU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSU8_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.510e-51 Identity = 83/123 (67.48%), Postives = 100/123 (81.30%), Query Frame = 1
Query: 28 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 396
++T+ D R +++ Q L KL+++G+ N T+SL+ E +TVSAFCRRRLPVVMVRLKMSE LKEA T+IEQGHVRVGP+ ITDPAFLVTR+ ED+VTWVD SKIKR I Y DKLDDFDLLG
Sbjct: 61 LKTMPAEDPVRYQLSTQILQKLYNMGIVNKTSSLSAIEKLTVSAFCRRRLPVVMVRLKMSENLKEATTFIEQGHVRVGPNVITDPAFLVTRTFEDYVTWVDSSKIKRTIMKYNDKLDDFDLLG 183
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A6U3VKU4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VKU4_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.780e-51 Identity = 82/131 (62.60%), Postives = 99/131 (75.57%), Query Frame = 1
Query: 1 GMFVRDACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLL 393
G+ + ++ L P D FRI MTEQ L KL +G+ TT SL K+E +T +A CRRRLPVVMVR+KMSETL+ A T IEQG VRVGP+ +TDP+FLVTR MEDFVTWVD SKI+RA+ Y DKLDDFDL+
Sbjct: 51 GLVTKLTAKLKNLPPDDPFRIHMTEQLLTKLHDMGILTTTKSLQKAETITATALCRRRLPVVMVRMKMSETLRNAITLIEQGQVRVGPNVVTDPSFLVTRGMEDFVTWVDSSKIRRAVHKYNDKLDDFDLM 181
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A7S2NY68_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY68_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.940e-51 Identity = 85/131 (64.89%), Postives = 102/131 (77.86%), Query Frame = 1
Query: 1 GMFVRDACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLL 393
GM R ++TL D FRI MTEQ L KL+++GV N +SL K+E +TVSA CRRRLPV+MVRL+M+ET+K A T IE G VRVGP+ +TDPAFLVTRSMEDFVTWVD KI+RA++ Y DKLDDFDLL
Sbjct: 51 GMVTRLCAKLKTLPNDDSFRIAMTEQLLEKLYNMGVINEKSSLLKAENITVSAICRRRLPVLMVRLRMAETIKIAITLIETGQVRVGPNVVTDPAFLVTRSMEDFVTWVDTGKIRRAVQKYNDKLDDFDLL 181
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A024TJP5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJP5_9STRA) HSP 1 Score: 169 bits (428), Expect = 4.190e-51 Identity = 81/117 (69.23%), Postives = 96/117 (82.05%), Query Frame = 1
Query: 46 SDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 396
+D FRIK TE+ L KL+ +G+ N+T SL K+E + VS+FCRRRLPVVMVRLKMSE +KEA T+IEQGHVRVGP+ +TDP F+VTR EDFVTWVD SKIKR I Y DKLDD+DLLG
Sbjct: 66 NDPFRIKTTEKLLEKLYHMGIINSTKSLLKAEELNVSSFCRRRLPVVMVRLKMSENIKEATTFIEQGHVRVGPNTVTDPGFMVTRPFEDFVTWVDSSKIKRTILKYNDKLDDYDLLG 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62.13932.1 >prot_H-paniculata_contig62.13932.1 ID=prot_H-paniculata_contig62.13932.1|Name=mRNA_H-paniculata_contig62.13932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp MFVRDACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVback to top mRNA from alignment at H-paniculata_contig62:54530..55907- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62.13932.1 ID=mRNA_H-paniculata_contig62.13932.1|Name=mRNA_H-paniculata_contig62.13932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1378bp|location=Sequence derived from alignment at H-paniculata_contig62:54530..55907- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62:54530..55907- >mRNA_H-paniculata_contig62.13932.1 ID=mRNA_H-paniculata_contig62.13932.1|Name=mRNA_H-paniculata_contig62.13932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig62:54530..55907- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |