prot_H-paniculata_contig62.13932.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig62.13932.1
Unique Nameprot_H-paniculata_contig62.13932.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length134
Homology
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.110e-67
Identity = 104/125 (83.20%), Postives = 114/125 (91.20%), Query Frame = 0
Query:    9 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLGEG 133
            ++TLD SDEFRIKMTEQ L KLF++G+ NT  SLAK+E  +VS+FCRRRLPVVMVRLKMSETL EA TYIEQGHVRVGPHA+TDPAFLVTRSMEDFVTWVDGSKIKRAIK YEDK+DDFDLLGEG
Sbjct:   60 LKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 184 bits (468), Expect = 3.480e-57
Identity = 91/128 (71.09%), Postives = 106/128 (82.81%), Query Frame = 0
Query:    6 ACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLGEG 133
            A  ++TL  +D FR+KMT Q L+KL S+GV +T  SL K+E +TVSAFCRRRLPVVMVR KMSETL+EA T+IE GH+RVGP+ +TDPAFLVTR+MEDFVTWVD SKIKR I  Y DKLDDFDLLGEG
Sbjct:   57 AAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCRRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 179 bits (455), Expect = 3.190e-55
Identity = 88/123 (71.54%), Postives = 101/123 (82.11%), Query Frame = 0
Query:    9 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 131
            ++ L P+D+FRIKMTE  L KLF++GV N+  SL   E V VSAFCRRRLPVVMVRLKMSET+KEA T+IE GHVRVGPH +TDPAFLV R+MEDF+TWVD SKIKR I  Y DKLDD+DLLG
Sbjct:   60 LRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCRRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.270e-53
Identity = 84/123 (68.29%), Postives = 101/123 (82.11%), Query Frame = 0
Query:    9 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 131
            ++ L P DEFRIKMT+  L+KL+++G+  T  SL++ E +  SAFCRRRLPVVMVR+KM+ETLKEA T+IEQGHVRVGP  +TDP FLVTRS EDF+TWVD SKIKRA+  Y DKLDDFDLLG
Sbjct:   60 LKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: K3XB78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB78_GLOUD)

HSP 1 Score: 172 bits (435), Expect = 3.490e-52
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 0
Query:   16 DEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 131
            D FRIK TE  L KLF++G+  T  SL K+E V VSAFCRRRLPVVMVR+KM+E +KEAAT++EQGHVRVGP  +TDPA+LVTRSMEDFVTWVD SKIKR I  Y DKLDD+DLLG
Sbjct:   67 DPFRIKTTEALLEKLFNMGLIQTKKSLMKAEEVNVSAFCRRRLPVVMVRVKMAENIKEAATFVEQGHVRVGPSVVTDPAYLVTRSMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 182          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A7S1VV42_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV42_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.330e-51
Identity = 82/130 (63.08%), Postives = 102/130 (78.46%), Query Frame = 0
Query:    1 MFVRDACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLL 130
            M  + A  ++TL   D FRI MT+Q L KLF +G+  T  SL K+E +T SA CRRR+PVVMVR+KM+ET+K A T++EQGHVRVGPH +TDPAFLVT +MED+VTWVD SKI+RA++ Y DKLDDFDLL
Sbjct:   52 MVTKLAAKLKTLKQDDPFRIAMTDQLLQKLFDMGLITTKKSLLKAEELTASALCRRRIPVVMVRMKMAETVKAAVTFVEQGHVRVGPHVVTDPAFLVTITMEDYVTWVDSSKIRRAVQKYNDKLDDFDLL 181          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A7S3HSU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSU8_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.460e-51
Identity = 83/123 (67.48%), Postives = 100/123 (81.30%), Query Frame = 0
Query:    9 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 131
            ++T+   D  R +++ Q L KL+++G+ N T+SL+  E +TVSAFCRRRLPVVMVRLKMSE LKEA T+IEQGHVRVGP+ ITDPAFLVTR+ ED+VTWVD SKIKR I  Y DKLDDFDLLG
Sbjct:   61 LKTMPAEDPVRYQLSTQILQKLYNMGIVNKTSSLSAIEKLTVSAFCRRRLPVVMVRLKMSENLKEATTFIEQGHVRVGPNVITDPAFLVTRTFEDYVTWVDSSKIKRTIMKYNDKLDDFDLLG 183          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A024TJP5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJP5_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.030e-51
Identity = 81/117 (69.23%), Postives = 96/117 (82.05%), Query Frame = 0
Query:   15 SDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 131
            +D FRIK TE+ L KL+ +G+ N+T SL K+E + VS+FCRRRLPVVMVRLKMSE +KEA T+IEQGHVRVGP+ +TDP F+VTR  EDFVTWVD SKIKR I  Y DKLDD+DLLG
Sbjct:   66 NDPFRIKTTEKLLEKLYHMGIINSTKSLLKAEELNVSSFCRRRLPVVMVRLKMSENIKEATTFIEQGHVRVGPNTVTDPGFMVTRPFEDFVTWVDSSKIKRTILKYNDKLDDYDLLG 182          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A6U3VKU4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VKU4_9STRA)

HSP 1 Score: 168 bits (426), Expect = 7.620e-51
Identity = 81/122 (66.39%), Postives = 96/122 (78.69%), Query Frame = 0
Query:    9 VQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLL 130
            ++ L P D FRI MTEQ L KL  +G+  TT SL K+E +T +A CRRRLPVVMVR+KMSETL+ A T IEQG VRVGP+ +TDP+FLVTR MEDFVTWVD SKI+RA+  Y DKLDDFDL+
Sbjct:   60 LKNLPPDDPFRIHMTEQLLTKLHDMGILTTTKSLQKAETITATALCRRRLPVVMVRMKMSETLRNAITLIEQGQVRVGPNVVTDPSFLVTRGMEDFVTWVDSSKIRRAVHKYNDKLDDFDLM 181          
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Match: A0A067CYP3_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYP3_SAPPC)

HSP 1 Score: 167 bits (424), Expect = 1.630e-50
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 0
Query:   15 SDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTVSAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRSMEDFVTWVDGSKIKRAIKNYEDKLDDFDLLG 131
            +D FRIK TE  L KL+ +G+ N T SL K+E + VSA CRRRLPVVMVRLKMSE +KEA T++EQGHVRVGP  +TDPAF+VTRS EDFVTWVD SKIKR I  Y DKLDD+DLLG
Sbjct:   66 NDPFRIKTTEALLEKLYQMGLINGTKSLLKAEELNVSAMCRRRLPVVMVRLKMSENIKEATTFVEQGHVRVGPTTVTDPAFMVTRSFEDFVTWVDSSKIKRTILKYNDKLDDYDLLG 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62.13932.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI1.110e-6783.20Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A836CN51_9STRA3.480e-5771.09Small nucleolar ribonucleoprotein U3 component n=1... [more]
A0A6S9JYI8_HETAK3.190e-5571.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TBD6_9STRA4.270e-5368.29Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta... [more]
K3XB78_GLOUD3.490e-5272.41Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1VV42_9STRA1.330e-5163.08Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3HSU8_9STRA1.460e-5167.48Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A024TJP5_9STRA4.030e-5169.23Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A6U3VKU4_9STRA7.620e-5166.39Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A067CYP3_SAPPC1.630e-5070.09Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 56..121
e-value: 3.3E-6
score: 36.6
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 56..102
e-value: 2.5E-11
score: 43.1
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 56..120
score: 9.837
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 57..128
e-value: 9.9E-7
score: 30.8
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 9..129
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 9..129
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 40..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62contigH-paniculata_contig62:54530..55904 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62.13932.1mRNA_H-paniculata_contig62.13932.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig62 54530..55907 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig62.13932.1 ID=prot_H-paniculata_contig62.13932.1|Name=mRNA_H-paniculata_contig62.13932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MFVRDACCVQTLDPSDEFRIKMTEQFLAKLFSVGVTNTTTSLAKSEAVTV
SAFCRRRLPVVMVRLKMSETLKEAATYIEQGHVRVGPHAITDPAFLVTRS
MEDFVTWVDGSKIKRAIKNYEDKLDDFDLLGEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9