mRNA_H-paniculata_contig61683.13889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: UPI000900F32D (uncharacterized protein LOC109147109 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900F32D) HSP 1 Score: 63.5 bits (153), Expect = 2.080e-10 Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = 1
Query: 13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
EP EA +P W A E+Q L D+G W + L + +YK K DG +E+YK RLV G+RQIKG+ Y E +P
Sbjct: 80 EPTLFSEAVQAPHWRE---AMRQELQSLEDDGTWILEDLLPGHKAIDNKWVYKVKYNADGSIERYKARLVVQGDRQIKGVDYNETFAP 164
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A6L2P5K6_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P5K6_TANCI) HSP 1 Score: 65.1 bits (157), Expect = 2.870e-10 Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 4 TSVEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
T +PK +EA + P W + + ++ L +NG W ++ K + IYKRK+ DG V++ K RLV GNRQ+KG+ Y+E +P
Sbjct: 466 TQKDPKGFKEAISDPGW-----CDAMNLRALEENGTWELIDLPSGKKAIRIHWIYKRKLKSDGYVDRKKARLVIQGNRQLKGVDYEETFAP 551
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A2P4X8M5_9STRA (Putative Pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8M5_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.300e-9 Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 10 VEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHY 258
V+PKN++EA P E + A E++ L N W + + +N ++ + +YK KI DG+VE+Y+ RLVA G+ Q+ G+ Y
Sbjct: 17 VDPKNYREAMRDPRVEKWKEAMRTEIEALEHNDTWEVIVKPRNAKLLHSKWVYKLKIYADGRVERYRARLVARGDEQVYGVDY 99
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 62.8 bits (151), Expect = 1.890e-9 Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
EP+ ++EA AS E E + A E E LI N WT+ + + ++ +I+K+K DGKV +YK RLV G Q GI Y E +P
Sbjct: 564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAP 651
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA) HSP 1 Score: 62.4 bits (150), Expect = 2.580e-9 Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 10 VEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
EP N +EA +W + A ++E++ + NG W ++R K VV +YK K+ E GKV+K+K RLV G Q GI Y E +P
Sbjct: 787 AEPLNFEEAVKIEKWRN---AMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAP 872
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD) HSP 1 Score: 61.2 bits (147), Expect = 6.360e-9 Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 1
Query: 16 PKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
P NH +A P W A E LI G W + R KN ++ +M +YK K +G++ +YK RLVA+GN Q+ G+ E SP
Sbjct: 408 PLNHIQAARDPNWN---PAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSP 491
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: UPI00092E9081 (uncharacterized protein LOC109363584 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E9081) HSP 1 Score: 58.2 bits (139), Expect = 8.710e-9 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQ 240
+PK ++EA + E Q A + EM+ + N WT +E K+ + M +YK+KIGEDGKVE YK LV G RQ
Sbjct: 49 DPKCYEEAMQILDHEKWQEAIKSEMESMKTNKVWTLVEASKDIKPIGCMWVYKKKIGEDGKVETYKAHLVDKGYRQ 124
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR) HSP 1 Score: 56.2 bits (134), Expect = 1.300e-8 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 82 EMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
E+ + +N W ++ + +++ +++KRKIG DGKVE YK RLVA G RQ + + Y+E SP
Sbjct: 4 EIDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL) HSP 1 Score: 60.1 bits (144), Expect = 1.670e-8 Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
EP ++EA S E E A E Q LIDN W ++ ++ ++ + ++KRK+ DGKV+++K RLVA G Q G+ + ++ +P
Sbjct: 349 EPTTYEEAVGSEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAP 436
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A6L2L857_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2L857_TANCI) HSP 1 Score: 59.7 bits (143), Expect = 2.280e-8 Identity = 33/88 (37.50%), Postives = 46/88 (52.27%), Query Frame = 1
Query: 13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
+PK +EA P W AE ++ L +N W + NK + IYK K+ DG VE+ K +LV GNRQ+KG+ Y E +P
Sbjct: 420 DPKGFEEAVKDPGWCDVMNAE---LRALEENETWELADLPPNKKAIGNHWIYKTKLKSDGSVERKKSKLVVQGNRQMKGVDYDETFAP 504 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig61683.13889.1 >prot_H-paniculata_contig61683.13889.1 ID=prot_H-paniculata_contig61683.13889.1|Name=mRNA_H-paniculata_contig61683.13889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp ATSVEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVback to top mRNA from alignment at H-paniculata_contig61683:131..406- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig61683.13889.1 ID=mRNA_H-paniculata_contig61683.13889.1|Name=mRNA_H-paniculata_contig61683.13889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig61683:131..406- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig61683:131..406- >mRNA_H-paniculata_contig61683.13889.1 ID=mRNA_H-paniculata_contig61683.13889.1|Name=mRNA_H-paniculata_contig61683.13889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig61683:131..406- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |