mRNA_H-paniculata_contig61683.13889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61683.13889.1
Unique NamemRNA_H-paniculata_contig61683.13889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: UPI000900F32D (uncharacterized protein LOC109147109 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900F32D)

HSP 1 Score: 63.5 bits (153), Expect = 2.080e-10
Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = 1
Query:   13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
            EP    EA  +P W     A   E+Q L D+G W   + L     +    +YK K   DG +E+YK RLV  G+RQIKG+ Y E  +P
Sbjct:   80 EPTLFSEAVQAPHWRE---AMRQELQSLEDDGTWILEDLLPGHKAIDNKWVYKVKYNADGSIERYKARLVVQGDRQIKGVDYNETFAP 164          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A6L2P5K6_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P5K6_TANCI)

HSP 1 Score: 65.1 bits (157), Expect = 2.870e-10
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    4 TSVEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
            T  +PK  +EA + P W      + + ++ L +NG W  ++    K  +    IYKRK+  DG V++ K RLV  GNRQ+KG+ Y+E  +P
Sbjct:  466 TQKDPKGFKEAISDPGW-----CDAMNLRALEENGTWELIDLPSGKKAIRIHWIYKRKLKSDGYVDRKKARLVIQGNRQLKGVDYEETFAP 551          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A2P4X8M5_9STRA (Putative Pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8M5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-9
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   10 VEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHY 258
            V+PKN++EA   P  E  + A   E++ L  N  W  + + +N  ++ +  +YK KI  DG+VE+Y+ RLVA G+ Q+ G+ Y
Sbjct:   17 VDPKNYREAMRDPRVEKWKEAMRTEIEALEHNDTWEVIVKPRNAKLLHSKWVYKLKIYADGRVERYRARLVARGDEQVYGVDY 99          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 62.8 bits (151), Expect = 1.890e-9
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
            EP+ ++EA AS E E  + A E E   LI N  WT+ +    +  ++  +I+K+K   DGKV +YK RLV  G  Q  GI Y E  +P
Sbjct:  564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAP 651          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 62.4 bits (150), Expect = 2.580e-9
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   10 VEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
             EP N +EA    +W +   A ++E++ +  NG W  ++R K   VV    +YK K+ E GKV+K+K RLV  G  Q  GI Y E  +P
Sbjct:  787 AEPLNFEEAVKIEKWRN---AMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAP 872          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 61.2 bits (147), Expect = 6.360e-9
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   16 PKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
            P NH +A   P W     A   E   LI  G W  + R KN  ++ +M +YK K   +G++ +YK RLVA+GN Q+ G+   E  SP
Sbjct:  408 PLNHIQAARDPNWN---PAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSP 491          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: UPI00092E9081 (uncharacterized protein LOC109363584 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E9081)

HSP 1 Score: 58.2 bits (139), Expect = 8.710e-9
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQ 240
            +PK ++EA    + E  Q A + EM+ +  N  WT +E  K+   +  M +YK+KIGEDGKVE YK  LV  G RQ
Sbjct:   49 DPKCYEEAMQILDHEKWQEAIKSEMESMKTNKVWTLVEASKDIKPIGCMWVYKKKIGEDGKVETYKAHLVDKGYRQ 124          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-8
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   82 EMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
            E+  + +N  W  ++  +  +++   +++KRKIG DGKVE YK RLVA G RQ + + Y+E  SP
Sbjct:    4 EIDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL)

HSP 1 Score: 60.1 bits (144), Expect = 1.670e-8
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
            EP  ++EA  S E E    A   E Q LIDN  W  ++   ++ ++ +  ++KRK+  DGKV+++K RLVA G  Q  G+ + ++ +P
Sbjct:  349 EPTTYEEAVGSEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAP 436          
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Match: A0A6L2L857_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2L857_TANCI)

HSP 1 Score: 59.7 bits (143), Expect = 2.280e-8
Identity = 33/88 (37.50%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   13 EPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 276
            +PK  +EA   P W     AE   ++ L +N  W   +   NK  +    IYK K+  DG VE+ K +LV  GNRQ+KG+ Y E  +P
Sbjct:  420 DPKGFEEAVKDPGWCDVMNAE---LRALEENETWELADLPPNKKAIGNHWIYKTKLKSDGSVERKKSKLVVQGNRQMKGVDYDETFAP 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61683.13889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000900F32D2.080e-1038.64uncharacterized protein LOC109147109 n=1 Tax=Ipomo... [more]
A0A6L2P5K6_TANCI2.870e-1036.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4X8M5_9STRA1.300e-937.35Putative Pol Polyprotein n=1 Tax=Phytophthora palm... [more]
A0A0J7K690_LASNI1.890e-939.77Retrovirus-related pol polyprotein from transposon... [more]
A0A151T9B6_CAJCA2.580e-938.20Retrovirus-related Pol polyprotein from transposon... [more]
UPI00090104FD6.360e-937.93uncharacterized protein LOC104779870 isoform X1 n=... [more]
UPI00092E90818.710e-943.42uncharacterized protein LOC109363584 n=1 Tax=Lupin... [more]
A0A2I0HGX5_PUNGR1.300e-840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182HAC3_AEDAL1.670e-835.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6L2L857_TANCI2.280e-837.50Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61683contigH-paniculata_contig61683:131..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.2
Seed ortholog evalue7.3e-11
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930696.5124767-CDS-H-paniculata_contig61683:130..4061622930696.5124767-CDS-H-paniculata_contig61683:130..406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61683 131..406 -
1691481410.6842937-CDS-H-paniculata_contig61683:130..4061691481410.6842937-CDS-H-paniculata_contig61683:130..406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61683 131..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61683.13889.1prot_H-paniculata_contig61683.13889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61683 131..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61683.13889.1

>prot_H-paniculata_contig61683.13889.1 ID=prot_H-paniculata_contig61683.13889.1|Name=mRNA_H-paniculata_contig61683.13889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
ATSVEPKNHQEAQASPEWEHGQTAEEVEMQGLIDNGAWTQMERLKNKLVV
STMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP
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mRNA from alignment at H-paniculata_contig61683:131..406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61683.13889.1 ID=mRNA_H-paniculata_contig61683.13889.1|Name=mRNA_H-paniculata_contig61683.13889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig61683:131..406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACCTCCGTGGAGCCCAAGAATCACCAGGAGGCGCAGGCATCGCCGGA GTGGGAACACGGGCAAACAGCGGAGGAAGTCGAGATGCAAGGCCTAATCG ACAACGGGGCTTGGACGCAAATGGAGCGCCTGAAGAACAAGCTGGTTGTG AGCACGATGATGATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGA GAAATATAAGTGCCGCCTGGTCGCCCACGGGAACCGTCAGATCAAGGGCA TCCACTACCAGGAAGCTTCGTCCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig61683:131..406-

>mRNA_H-paniculata_contig61683.13889.1 ID=mRNA_H-paniculata_contig61683.13889.1|Name=mRNA_H-paniculata_contig61683.13889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig61683:131..406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACCTCCGTGGAGCCCAAGAATCACCAGGAGGCGCAGGCATCGCCGGA
GTGGGAACACGGGCAAACAGCGGAGGAAGTCGAGATGCAAGGCCTAATCG
ACAACGGGGCTTGGACGCAAATGGAGCGCCTGAAGAACAAGCTGGTTGTG
AGCACGATGATGATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGA
GAAATATAAGTGCCGCCTGGTCGCCCACGGGAACCGTCAGATCAAGGGCA
TCCACTACCAGGAAGCTTCGTCCCCTGCGACCTCCGTGGAGCCCAAGAAT
CACCAGGAGGCGCAGGCATCGCCGGAGTGGGAACACGGGCAAACAGCGGA
GGAAGTCGAGATGCAAGGCCTAATCGACAACGGGGCTTGGACGCAAATGG
AGCGCCTGAAGAACAAGCTGGTTGTGAGCACGATGATGATCTACAAAAGA
AAAATCGGCGAGGACGGAAAAGTGGAGAAATATAAGTGCCGCCTGGTCGC
CCACGGGAACCGTCAGATCAAGGGCATCCACTACCAGGAAGCTTCGTCCC
CT
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