mRNA_H-paniculata_contig616.13878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig616.13878.1
Unique NamemRNA_H-paniculata_contig616.13878.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: D7FR56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR56_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.730e-59
Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 1
Query:    1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRINSLFTSAEQAMLAAMKKW 393
            LKDLKH  K A +W  RLKKTGIEKGTASI ELK++IPEAA IR+DL++D+RVLKQATCSYC+C+RPGEDLG LV+CK C EGYH +CMGI  EKA AL  S++GFKCIRCRI+SLFTSAEQAML AMK+W
Sbjct: 1064 LKDLKHQQKLALRWTTRLKKTGIEKGTASINELKSMIPEAADIRVDLTDDIRVLKQATCSYCICSRPGEDLGPLVDCKKCGEGYHQICMGISPEKAAALEASEEGFKCIRCRISSLFTSAEQAMLTAMKRW 1194          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S2B2N6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2N6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.170e-22
Identity = 47/127 (37.01%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   13 KHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRINSLFTSAEQAMLAAMKKW 393
            K+ MK A  W  ++KKTG+EKG A++ EL+ L+PEA SI +DLS+++ V++ AT  +C+C +    +G +VEC VC E YH  C+GI          +   + C+RC    +++S    + A +  W
Sbjct:    1 KNQMKLAKAWRIKVKKTGLEKGEATVAELRELLPEAYSIMVDLSDELDVIQAATSKFCICRQ--SRVGDMVECSVCEEKYHKACVGISPSAP-----TPPNYTCMRCLCKQVYSSVTHKLFATVDHW 120          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S0GHZ5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHZ5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.850e-20
Identity = 50/133 (37.59%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAAS--IRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRINSLFTSAEQAMLAAMKKW 393
            +K L+ H++ A +W  R+KK+GIE G+ASI+ L  LI E       + +  +   LKQATC +C+C +P E  G ++EC  C E YHG C+G+   KA A R+ K  + C+RC + + +  + ++ L +++KW
Sbjct:   57 VKSLQKHIRIAHRWALRVKKSGIEDGSASISNLNLLIQEYEDEDFLVAMPTEYSKLKQATCDHCLCRQPHE--GFMIECDFCGEWYHGSCVGV--TKARAERREK--YTCVRCVVVNKYKDSAKSALRSVRKW 183          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S2R6X8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R6X8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.910e-18
Identity = 50/132 (37.88%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRIN---SLFTSAEQAMLAAMK 387
            +KD+++ +K A +WL ++KKTGIEKG AS+ +L+ L+ E+ SI +DLSE   +L QAT  YC+C    +D+  +VEC  C E YH  CMG      + + +   G+ C  C +    S      +A +A M+
Sbjct: 1603 VKDIRNAVKVAKQWLTKVKKTGIEKGEASLEQLRVLLLESQSIPVDLSEHTHILTQATRVYCVCRGAFDDV--MVECMSCLEWYHIKCMG---NLTQLVAKRSSGYCCPVCSVKRSASSMVGLSKAAIARMR 1729          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S4E9K3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9K3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.490e-17
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   10 LKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSK 309
            L+   + A  W  ++K+TGIE+G ASI+EL+AL+PEAA IR+D+S DV V+KQA+   C+C  P +  G +++C+ C   +H  C+G G    E L   K
Sbjct:  805 LRSAARAARAWFAKVKRTGIERGEASISELRALLPEAAKIRVDISGDVDVVKQASLQVCLCASPAD--GQMLQCESCAMQFHARCVGRGGPDLEPLVSKK 902          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A8J2SPN5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPN5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.560e-17
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   10 LKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSK 309
            L+   + A  W  ++K+TGIE+G ASI+EL+AL+PEAA IR+D+S DV V+KQA+   C+C  P +  G +++C+ C   +H  C+G G    E L   K
Sbjct: 1584 LRSAARAARAWFAKVKRTGIERGEASISELRALLPEAAKIRVDISGDVDVVKQASLQVCLCASPAD--GQMLQCESCAMQFHARCVGRGGPDLEPLVSKK 1681          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S2R5D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5D7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.480e-16
Identity = 47/117 (40.17%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDG-FKCIRCRINSL 348
            LK L   +K A  W  +L+KTGIEKG A  +EL+ L+PEA+ ++ID+S+DV V+K AT  +CMC R G   G + +C  C   +H  C+        A +   DG F CI C +  +
Sbjct:  470 LKRLGTELKQAKVWRSKLRKTGIEKGEAKTSELRKLLPEASKLKIDVSDDVEVIKHATTRHCMCRRTG--YGEMTQCTRCHRMFHTACV--------AEQVGPDGSFSCIGCSLRGM 576          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S3LGB9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LGB9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.720e-12
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRI 339
            +K L+  ++ +  W+  +K++GIEKG ASI +L+ L+ E+  I +D+SE   VLK AT  YC+C   G     ++ C  C E +H  C+G+ +  A+ L+     F C  C I
Sbjct:  558 VKILRATIRESKSWVAAVKRSGIEKGEASIQQLQKLLEESKHINLDMSEHTSVLKTATKRYCLCR--GSIDSSMIACNECKEKFHVGCIGLSSGSAKKLQH----FTCPSCEI 664          
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: UPI00142563C5 (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142563C5)

HSP 1 Score: 53.5 bits (127), Expect = 1.320e-5
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  115 EAASIRIDLSEDVRVLKQATCS--YCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCR 336
            EA +I+  +  D ++ KQ      YC+C  P +D    + C +C + +HG C+GIG E+AEA+    D + C +C+
Sbjct: 3160 EAQNIKDFICNDCQLQKQEQDDELYCLCRTPYDDSQFYIGCDLCNDWFHGQCVGIGQEEAEAI----DSYVCKKCQ 3231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FR56_ECTSI1.730e-5974.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2B2N6_9STRA2.170e-2237.01Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S0GHZ5_9STRA1.850e-2037.59Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2R6X8_9STRA2.910e-1837.88Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4E9K3_9STRA2.490e-1743.00Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2SPN5_9STRA2.560e-1743.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2R5D7_9STRA1.480e-1640.17Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3LGB9_9STRA1.720e-1235.40Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
UPI00142563C51.320e-534.21nucleosome-remodeling factor subunit BPTF-like n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig616contigH-paniculata_contig616:29221..29613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue7.7e-48
Seed eggNOG ortholog2880.D7FR56
Preferred nameCTF1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0023051,GO:0023052,GO:0030545,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.demethylase
EggNOG OGsKOG1633@1,KOG1633@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930695.235962-UTR-H-paniculata_contig616:29220..292411622930695.235962-UTR-H-paniculata_contig616:29220..29241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig616 29221..29241 +
1691481410.018069-UTR-H-paniculata_contig616:29220..292411691481410.018069-UTR-H-paniculata_contig616:29220..29241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig616 29221..29241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930695.2520936-CDS-H-paniculata_contig616:29241..296131622930695.2520936-CDS-H-paniculata_contig616:29241..29613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig616 29242..29613 +
1691481410.030051-CDS-H-paniculata_contig616:29241..296131691481410.030051-CDS-H-paniculata_contig616:29241..29613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig616 29242..29613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig616.13878.1prot_H-paniculata_contig616.13878.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig616 29242..29613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig616.13878.1

>prot_H-paniculata_contig616.13878.1 ID=prot_H-paniculata_contig616.13878.1|Name=mRNA_H-paniculata_contig616.13878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQA
TCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFK
CIRCRINSLFTSAEQAMLAAMKKW
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mRNA from alignment at H-paniculata_contig616:29221..29613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig616.13878.1 ID=mRNA_H-paniculata_contig616.13878.1|Name=mRNA_H-paniculata_contig616.13878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig616:29221..29613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGGATTTGAAGCATCACATGAAAACTGCGACGAAGTGGCTGCAGCG GCTGAAGAAAACGGGAATCGAGAAGGGCACAGCCAGCATCACGGAACTGA AGGCTTTGATACCTGAGGCTGCCTCTATCCGCATCGATCTCTCTGAGGAC GTTCGTGTTCTGAAACAAGCCACATGCAGCTACTGCATGTGCAACCGTCC TGGCGAGGACTTGGGATTGTTGGTGGAGTGTAAGGTGTGCACTGAGGGTT ACCATGGGGTGTGCATGGGGATCGGTAACGAGAAAGCTGAGGCGCTGCGT CAGTCAAAAGATGGCTTCAAGTGTATTCGCTGTCGTATTAACAGTCTGTT CACCAGCGCAGAACAGGCGATGCTAGCCGCAATGAAGAAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig616:29221..29613+

>mRNA_H-paniculata_contig616.13878.1 ID=mRNA_H-paniculata_contig616.13878.1|Name=mRNA_H-paniculata_contig616.13878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig616:29221..29613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACTGCGACGAAGTGGCTGCAGCGGCTGAAGAAAACGGGAATCGA
GAAGGGCACAGCCAGCATCACGGAACTGAAGGCTTTGATACCTGAGGCTG
CCTCTATCCGCATCGATCTCTCTGAGGACGTTCGTGTTCTGAAACAAGCC
ACATGCAGCTACTGCATGTGCAACCGTCCTGGCGAGGACTTGGGATTGTT
GGTGGAGTGTAAGGTGTGCACTGAGGGTTACCATGGGGTGTGCATGGGGA
TCGGTAACGAGAAAGCTGAGGCGCTGCGTCAGTCAAAAGATGGCTTCAAG
TGTATTCGCTGTCGTATTAACAGTCTGTTCACCAGCGCAGAACAGGCGAT
GCTAGCCGCAATGAAGAAGTGGATGAAAACTGCGACGAAGTGGCTGCAGC
GGCTGAAGAAAACGGGAATCGAGAAGGGCACAGCCAGCATCACGGAACTG
AAGGCTTTGATACCTGAGGCTGCCTCTATCCGCATCGATCTCTCTGAGGA
CGTTCGTGTTCTGAAACAAGCCACATGCAGCTACTGCATGTGCAACCGTC
CTGGCGAGGACTTGGGATTGTTGGTGGAGTGTAAGGTGTGCACTGAGGGT
TACCATGGGGTGTGCATGGGGATCGGTAACGAGAAAGCTGAGGCGCTGCG
TCAGTCAAAAGATGGCTTCAAGTGTATTCGCTGTCGTATTAACAGTCTGT
TCACCAGCGCAGAACAGGCGATGCTAGCCGCAATGAAGAAGTGG
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