mRNA_H-paniculata_contig616.13878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: D7FR56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR56_ECTSI) HSP 1 Score: 207 bits (527), Expect = 1.730e-59 Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 1
Query: 1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRINSLFTSAEQAMLAAMKKW 393
LKDLKH K A +W RLKKTGIEKGTASI ELK++IPEAA IR+DL++D+RVLKQATCSYC+C+RPGEDLG LV+CK C EGYH +CMGI EKA AL S++GFKCIRCRI+SLFTSAEQAML AMK+W
Sbjct: 1064 LKDLKHQQKLALRWTTRLKKTGIEKGTASINELKSMIPEAADIRVDLTDDIRVLKQATCSYCICSRPGEDLGPLVDCKKCGEGYHQICMGISPEKAAALEASEEGFKCIRCRISSLFTSAEQAMLTAMKRW 1194
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S2B2N6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2N6_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.170e-22 Identity = 47/127 (37.01%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 13 KHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRINSLFTSAEQAMLAAMKKW 393
K+ MK A W ++KKTG+EKG A++ EL+ L+PEA SI +DLS+++ V++ AT +C+C + +G +VEC VC E YH C+GI + + C+RC +++S + A + W
Sbjct: 1 KNQMKLAKAWRIKVKKTGLEKGEATVAELRELLPEAYSIMVDLSDELDVIQAATSKFCICRQ--SRVGDMVECSVCEEKYHKACVGISPSAP-----TPPNYTCMRCLCKQVYSSVTHKLFATVDHW 120
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S0GHZ5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHZ5_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.850e-20 Identity = 50/133 (37.59%), Postives = 81/133 (60.90%), Query Frame = 1
Query: 1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAAS--IRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRINSLFTSAEQAMLAAMKKW 393
+K L+ H++ A +W R+KK+GIE G+ASI+ L LI E + + + LKQATC +C+C +P E G ++EC C E YHG C+G+ KA A R+ K + C+RC + + + + ++ L +++KW
Sbjct: 57 VKSLQKHIRIAHRWALRVKKSGIEDGSASISNLNLLIQEYEDEDFLVAMPTEYSKLKQATCDHCLCRQPHE--GFMIECDFCGEWYHGSCVGV--TKARAERREK--YTCVRCVVVNKYKDSAKSALRSVRKW 183
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S2R6X8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R6X8_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.910e-18 Identity = 50/132 (37.88%), Postives = 77/132 (58.33%), Query Frame = 1
Query: 1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRIN---SLFTSAEQAMLAAMK 387
+KD+++ +K A +WL ++KKTGIEKG AS+ +L+ L+ E+ SI +DLSE +L QAT YC+C +D+ +VEC C E YH CMG + + + G+ C C + S +A +A M+
Sbjct: 1603 VKDIRNAVKVAKQWLTKVKKTGIEKGEASLEQLRVLLLESQSIPVDLSEHTHILTQATRVYCVCRGAFDDV--MVECMSCLEWYHIKCMG---NLTQLVAKRSSGYCCPVCSVKRSASSMVGLSKAAIARMR 1729
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S4E9K3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9K3_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.490e-17 Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 10 LKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSK 309
L+ + A W ++K+TGIE+G ASI+EL+AL+PEAA IR+D+S DV V+KQA+ C+C P + G +++C+ C +H C+G G E L K
Sbjct: 805 LRSAARAARAWFAKVKRTGIERGEASISELRALLPEAAKIRVDISGDVDVVKQASLQVCLCASPAD--GQMLQCESCAMQFHARCVGRGGPDLEPLVSKK 902
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A8J2SPN5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPN5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.560e-17 Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 10 LKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSK 309
L+ + A W ++K+TGIE+G ASI+EL+AL+PEAA IR+D+S DV V+KQA+ C+C P + G +++C+ C +H C+G G E L K
Sbjct: 1584 LRSAARAARAWFAKVKRTGIERGEASISELRALLPEAAKIRVDISGDVDVVKQASLQVCLCASPAD--GQMLQCESCAMQFHARCVGRGGPDLEPLVSKK 1681
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S2R5D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5D7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.480e-16 Identity = 47/117 (40.17%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDG-FKCIRCRINSL 348
LK L +K A W +L+KTGIEKG A +EL+ L+PEA+ ++ID+S+DV V+K AT +CMC R G G + +C C +H C+ A + DG F CI C + +
Sbjct: 470 LKRLGTELKQAKVWRSKLRKTGIEKGEAKTSELRKLLPEASKLKIDVSDDVEVIKHATTRHCMCRRTG--YGEMTQCTRCHRMFHTACV--------AEQVGPDGSFSCIGCSLRGM 576
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: A0A7S3LGB9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LGB9_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.720e-12 Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 1 LKDLKHHMKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQATCSYCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCRI 339
+K L+ ++ + W+ +K++GIEKG ASI +L+ L+ E+ I +D+SE VLK AT YC+C G ++ C C E +H C+G+ + A+ L+ F C C I
Sbjct: 558 VKILRATIRESKSWVAAVKRSGIEKGEASIQQLQKLLEESKHINLDMSEHTSVLKTATKRYCLCR--GSIDSSMIACNECKEKFHVGCIGLSSGSAKKLQH----FTCPSCEI 664
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Match: UPI00142563C5 (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142563C5) HSP 1 Score: 53.5 bits (127), Expect = 1.320e-5 Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 115 EAASIRIDLSEDVRVLKQATCS--YCMCNRPGEDLGLLVECKVCTEGYHGVCMGIGNEKAEALRQSKDGFKCIRCR 336
EA +I+ + D ++ KQ YC+C P +D + C +C + +HG C+GIG E+AEA+ D + C +C+
Sbjct: 3160 EAQNIKDFICNDCQLQKQEQDDELYCLCRTPYDDSQFYIGCDLCNDWFHGQCVGIGQEEAEAI----DSYVCKKCQ 3231 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig616.13878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig616.13878.1 >prot_H-paniculata_contig616.13878.1 ID=prot_H-paniculata_contig616.13878.1|Name=mRNA_H-paniculata_contig616.13878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp MKTATKWLQRLKKTGIEKGTASITELKALIPEAASIRIDLSEDVRVLKQAback to top mRNA from alignment at H-paniculata_contig616:29221..29613+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig616.13878.1 ID=mRNA_H-paniculata_contig616.13878.1|Name=mRNA_H-paniculata_contig616.13878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig616:29221..29613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig616:29221..29613+ >mRNA_H-paniculata_contig616.13878.1 ID=mRNA_H-paniculata_contig616.13878.1|Name=mRNA_H-paniculata_contig616.13878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig616:29221..29613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |