mRNA_H-paniculata_contig6159.13875.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6159.13875.1
Unique NamemRNA_H-paniculata_contig6159.13875.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: A0A6H5LM37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM37_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 4.470e-85
Identity = 151/235 (64.26%), Postives = 180/235 (76.60%), Query Frame = 1
Query:  595 KKELKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSAS---GREVGAVNSDGGIQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSG-------LKELTLVPRTWAGRGLLGVHLVPP 1269
            +KEL +LQAQRDALELEA  I+SEL SPG NGEAPVGV+G+LVD  GFPLAGFDLFNVREKRHR NCIQTDHKAVM+++EKSLHALH+       L RP        VT AT  AS   G +  A  +D  + L P+AKVN+VS GSPA++AGLAVGDLVLRFG +D+SHPKG+ GVVDVVRE EG++VPV VLR   ++G+ G       ++ELTLVP+TW+GRGLLGVHL+PP
Sbjct:   24 RKELVVLQAQRDALELEADAIASELKSPGANGEAPVGVKGALVDADGFPLAGFDLFNVREKRHRFNCIQTDHKAVMSRIEKSLHALHDAR-----LARPTPLPTAFSVTAATPPASSLIGMDSAAAAAD--MSLAPIAKVNQVSEGSPASAAGLAVGDLVLRFGHVDISHPKGLGGVVDVVREKEGQEVPVTVLRTTSVSGEGGSVGTGGGVRELTLVPKTWSGRGLLGVHLLPP 251          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: A0A7S3HBQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBQ7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.230e-35
Identity = 85/221 (38.46%), Postives = 126/221 (57.01%), Query Frame = 1
Query:  604 LKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKELTLVPRTWAGRGLLGVHLVP 1266
            L  L AQRDALE EA  I SEL SPG NGE P G++   VD  G+P    D+ NV++KR RL  I TD+KA+M ++E+++  LH            AS + D+  T A L                   P+AK++E+  GSPAA+AG+ + DL+++FG++  +    +  +V++V +N  + +P++VLR+      S   EL++ P+ W GRGLLG HL P
Sbjct:   18 LNNLSAQRDALEAEADAIHSELTSPGINGEPPAGIKTPFVDAEGYPRGDIDIINVKDKRRRLAEINTDYKALMKQIEQTMLQLHNELPPVPTSVPTASENTDSNTTVAPLK------------------PMAKLDEIFPGSPAATAGIQLNDLLMQFGTVTSNTNNFLKSIVELVGKNVNQPIPMVVLRN------SECVELSITPQPWGGRGLLGCHLSP 214          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: A0A8B7Y0R0_ACAPL (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y0R0_ACAPL)

HSP 1 Score: 141 bits (355), Expect = 2.870e-35
Identity = 84/227 (37.00%), Postives = 135/227 (59.47%), Query Frame = 1
Query:  586 ADKKKELKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKELTLVPRTWAGRGLLGVHLVP 1266
            A ++++++ L  ++D++E E   +   L S G      VG+ G L+DP G+P +  D+++VR  RHR+ C+Q DHKA+M ++E SLH LH       A  R       ++ TN   SA+              L+P A+++ V+ GSPAA+AGL VGD ++ FG ++ S+ K M  V  VV++NEG+ + +++LR G      G+ +L+L P+TW+GRGLLG ++VP
Sbjct:    3 ASRRQKVQELMDEKDSIEKEIKELFEVLESQGN-----VGMHGPLIDPEGYPRSDIDVYSVRTARHRIICLQNDHKALMVQIESSLHDLH-------AFERQQREQGGSLPTNGAGSAAAA------------LVPFARIDLVTEGSPAANAGLLVGDEIIEFGHVNTSNFKSMQDVAAVVQQNEGKLLTIVMLREG-----QGV-QLSLKPQTWSGRGLLGCNIVP 199          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: A0A0G4EYN7_VITBC (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EYN7_VITBC)

HSP 1 Score: 137 bits (346), Expect = 5.460e-34
Identity = 88/222 (39.64%), Postives = 123/222 (55.41%), Query Frame = 1
Query:  604 LKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLP-LAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKELTLVPRTWAGRGLLGVHLVP 1266
            L+ L   RDA+E E   +++ L +PG  G     VRG+L+D  GFP A  D+  +R+ RH+L C+QTDH  +M K+E  LH LH   G  +  R P SSS+ +              G  +   G+   P  A V+EVS GSP+ +AGL + D ++ FG +D S P G   +  VV+EN GR V V+V R      ++    L+L P+TW+GRGLLG HL P
Sbjct:    6 LQQLIKDRDAMESEMEALTAYLTAPGMPG-----VRGNLLDAEGFPRADLDIVPIRQARHKLACLQTDHAELMKKIEAGLHDLHA-QGAVRVPRGPGSSSSSS--------------GPSSRANGVGHRPAFAVVDEVSAGSPSEAAGLQINDRIVAFGDVDASTPDGFKSIARVVQENVGRNVNVVVRR------EAREMALSLRPQTWSGRGLLGCHLQP 201          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: UPI001455599A (26S proteasome non-ATPase regulatory subunit 9-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455599A)

HSP 1 Score: 135 bits (340), Expect = 3.690e-33
Identity = 86/229 (37.55%), Postives = 129/229 (56.33%), Query Frame = 1
Query:  586 ADKKKELKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKE--LTLVPRTWAGRGLLGVHLVP 1266
            A  +++++ L A++D++E E   +   L S G      VG+ G L+D  G+P    D+++ R  RHR+ C+Q DHKA+M  +E SLH LH    Q +          +++ TN   +A+            I L+P A ++ VS GSPAA+AGL VGD ++ FGSI  S+ K +  +  VVR ++GR V V+ LR G        KE  L+L P+TW+GRGLLG ++VP
Sbjct:    3 APTREKVQELIAEKDSIEREIKELYDVLESQGN-----VGMDGPLIDSEGYPRNDIDVYSARTARHRIICLQNDHKALMVNIENSLHDLHSYERQQR-------EQGESLPTNGASTAA------------IALIPFASIDLVSEGSPAANAGLLVGDEIIEFGSICTSNFKSLQDIATVVRHSQGRSVRVVTLREG--------KEVPLSLKPQTWSGRGLLGCNIVP 199          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: UPI0018D5F789 (26S proteasome non-ATPase regulatory subunit 9-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5F789)

HSP 1 Score: 134 bits (336), Expect = 1.340e-32
Identity = 82/227 (36.12%), Postives = 130/227 (57.27%), Query Frame = 1
Query:  586 ADKKKELKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKELTLVPRTWAGRGLLGVHLVP 1266
            A ++++++ L  ++DA+E E       L S G      VG+ G L+D  G+P +  DL++VR  RHR+ C+Q DHKA+MA +E SLH LH       A  R       ++ TN  +SA+              L+P A+++ VS GSPAA AGL  GD ++ FG +D S+ + M  +  VV+E++G+ + ++ LR G      G+  ++L P+TW+GRGLLG +++P
Sbjct:    3 APRRQKVQDLMNEKDAIEQEIKEFHEVLESQGN-----VGMHGPLIDKEGYPRSDIDLYSVRTARHRIICLQNDHKALMANIENSLHDLH-------AFERQEREHGASLPTNGAVSAAAA------------LVPFARIDLVSEGSPAAKAGLLEGDEIIEFGYVDTSNFQTMQDIAAVVQESQGKSLRILTLREG-----KGV-PVSLKPQTWSGRGLLGCNMIP 199          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: W7TDY4_9STRA (26S proteasome non-ATPase regulatory subunit 9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDY4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.160e-30
Identity = 94/260 (36.15%), Postives = 140/260 (53.85%), Query Frame = 1
Query:  589 DKKKELKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRG-SLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVN--------------------------SDGG--IQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLR----HGGMAGQSGLKE---LTLVPRTWAGRGLLGVHL 1260
            D + EL+ L  +RD LE EA+VI   L SPGP G AP G+ G  LVD  GFP A  D+++VR KR+RL CI TDH  +M ++E+ +  LH+ +  +  +R     SN+     +T S++GR++GA++                           +GG   +  P A +++V   SPA  AGL  GDL++  G+++  +    A +V +V+ENEGR + V V R      G    +  KE   ++L+P  W+GRGLLG HL
Sbjct:    4 DARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVR---GMSNNW----STSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: A0A2J8ADI3_9CHLO (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ADI3_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 3.350e-30
Identity = 96/264 (36.36%), Postives = 128/264 (48.48%), Query Frame = 1
Query:  556 GLTAEACHPVADK-KKELKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAV---MAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGG---------IQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKG--------------MAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKELTLVPRTWAGRGLLGVHLVP 1266
            G +AE    V D  +++L+ L  QR   E E S IS  LN+PG  G     ++GSL+D  GFP A  D+  VR  R+RL C+  DHKA+   +A+L   +HA     G         +S N +  +     A G   GAV +DG          I L+P A V+EVS GSPAA+AGL VGDL+  FG + +    G              M  V  V+   EG+ V   +LR      Q      +L P+ W+GRGLLG HL P
Sbjct:   13 GPSAEGAENVVDVLRRDLRELDRQRQGAEQEISAISERLNAPGQPG-----LKGSLLDKEGFPRADIDVHQVRRDRNRLVCLTNDHKAMTDRLARLLAEVHAASRADGSPAGAVASTTSGNASAASQTNSDADGTRPGAVAADGPAGSSGNEAFIALVPFAMVDEVSSGSPAAAAGLQVGDLLCDFGGVAVERAVGAPAAEAASGSSGPLMQRVAAVLAAREGQPVAATLLR------QXXXXXASLTPQRWSGRGLLGCHLSP 265          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: A0A6A6P2K6_9PEZI (Uncharacterized protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P2K6_9PEZI)

HSP 1 Score: 126 bits (317), Expect = 1.510e-29
Identity = 91/239 (38.08%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  553 SGLTAEACHPVADKKKELKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKELTLVPRT-WAGRGLLGVHLVP 1266
            +G  A A + V  ++  L  L A+RD ++ E   + + L S G N      +R SL    GFP    D+  +R  R R+  +Q D+K +M K+E  LHA H     AQ+   P +S   T  T           G     G +   P AKVN V GGSPA +AGL  GD+VLRFG+    + + +  V + V +NEGRQ+ V+V R  G  G S   EL L PR  W GRGLLG HL+P
Sbjct:   15 TGAAASAPNGVPKEELPLVELIAERDRVQSELLALGTVLESHGVN------MRTSLTTFDGFPRDDIDVAQIRTTRARMIHLQNDYKNLMGKIEIGLHA-HHAGLAAQSSPAPPASRPATQPT----------AGQATEQGPVPDTPFAKVNTVEGGSPADTAGLKPGDMVLRFGNATWLNHEKLGKVAETVSQNEGRQIRVVVERQQGSGGGSTQMELQLTPRRGWGGRGLLGCHLLP 236          
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Match: A0A1S3JYQ9_LINUN (26S proteasome non-ATPase regulatory subunit 9 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JYQ9_LINUN)

HSP 1 Score: 123 bits (309), Expect = 1.490e-28
Identity = 78/222 (35.14%), Postives = 121/222 (54.50%), Query Frame = 1
Query:  604 LKMLQAQRDALELEASVISSELNSPGPNGEAPVGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHALHEISG-QAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLPLAKVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQVPVIVLRHGGMAGQSGLKELTLVPRTWAGRGLLGVHLVP 1266
            +K L AQ+DALE E   +   L S G      VG+ G ++D   +P +  D++ VR  RHR+ C+Q DHKA M ++E++L+ LHE +  Q +      SS+ +T V                 D  I   P AK++ V  GSPA+ AGL +GD ++ FGS+++ +   +  +  VV+ ++G  + V VLR G          L+L P+TW+G+GLLG ++VP
Sbjct:   31 VKELIAQKDALEAELKELMDVLESQGG-----VGMDGPILDEEQYPRSDIDVYTVRHARHRIACLQNDHKAKMKEIEENLYQLHEEARKQKEQAMEVDSSAQETKV-----------------DTAIDEKPFAKIDRVDSGSPASQAGLTLGDEIIEFGSVNVKNFTTLQNIATVVQHSQGSPLHVTVLRQGERT------HLSLTPQTWSGKGLLGCNIVP 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6159.13875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LM37_9PHAE4.470e-8564.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HBQ7_9STRA2.230e-3538.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8B7Y0R0_ACAPL2.870e-3537.0026S proteasome non-ATPase regulatory subunit 9 n=1... [more]
A0A0G4EYN7_VITBC5.460e-3439.6426S proteasome non-ATPase regulatory subunit 9 n=1... [more]
UPI001455599A3.690e-3337.5526S proteasome non-ATPase regulatory subunit 9-lik... [more]
UPI0018D5F7891.340e-3236.1226S proteasome non-ATPase regulatory subunit 9-lik... [more]
W7TDY4_9STRA2.160e-3036.1526S proteasome non-ATPase regulatory subunit 9 n=3... [more]
A0A2J8ADI3_9CHLO3.350e-3036.3626S proteasome non-ATPase regulatory subunit 9 n=1... [more]
A0A6A6P2K6_9PEZI1.510e-2938.08Uncharacterized protein n=1 Tax=Lineolata rhizopho... [more]
A0A1S3JYQ9_LINUN1.490e-2835.1426S proteasome non-ATPase regulatory subunit 9 n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6159contigH-paniculata_contig6159:1023..5712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.7
Seed ortholog evalue5.1e-72
Seed eggNOG ortholog2880.D8LKY7
Preferred nameNAS2
KEGG koko:K06693,ko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009987,GO:0016043,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030163,GO:0032991,GO:0034622,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0065003,GO:0070682,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.26S Proteasome non-ATPase regulatory subunit
EggNOG OGsCOG0265@1,KOG3129@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko03051,ko04031,ko04147
Exons4
Model size1717
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6159.13875.1prot_H-paniculata_contig6159.13875.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6159 1572..5267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.8273044-UTR-H-paniculata_contig6159:1022..15711622930694.8273044-UTR-H-paniculata_contig6159:1022..1571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6159 1023..1571 +
1691481409.8421369-UTR-H-paniculata_contig6159:1022..15711691481409.8421369-UTR-H-paniculata_contig6159:1022..1571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6159 1023..1571 +
1622930694.941472-UTR-H-paniculata_contig6159:5267..57121622930694.941472-UTR-H-paniculata_contig6159:5267..5712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6159 5268..5712 +
1691481409.9128103-UTR-H-paniculata_contig6159:5267..57121691481409.9128103-UTR-H-paniculata_contig6159:5267..5712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6159 5268..5712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.8510637-CDS-H-paniculata_contig6159:1571..18071622930694.8510637-CDS-H-paniculata_contig6159:1571..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 1572..1807 +
1691481409.8568408-CDS-H-paniculata_contig6159:1571..18071691481409.8568408-CDS-H-paniculata_contig6159:1571..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 1572..1807 +
1622930694.895977-CDS-H-paniculata_contig6159:3236..33091622930694.895977-CDS-H-paniculata_contig6159:3236..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 3237..3309 +
1691481409.87516-CDS-H-paniculata_contig6159:3236..33091691481409.87516-CDS-H-paniculata_contig6159:3236..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 3237..3309 +
1622930694.909316-CDS-H-paniculata_contig6159:4177..43301622930694.909316-CDS-H-paniculata_contig6159:4177..4330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 4178..4330 +
1691481409.8890264-CDS-H-paniculata_contig6159:4177..43301691481409.8890264-CDS-H-paniculata_contig6159:4177..4330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 4178..4330 +
1622930694.9250185-CDS-H-paniculata_contig6159:5006..52671622930694.9250185-CDS-H-paniculata_contig6159:5006..5267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 5007..5267 +
1691481409.903098-CDS-H-paniculata_contig6159:5006..52671691481409.903098-CDS-H-paniculata_contig6159:5006..5267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 5007..5267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6159.13875.1

>prot_H-paniculata_contig6159.13875.1 ID=prot_H-paniculata_contig6159.13875.1|Name=mRNA_H-paniculata_contig6159.13875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
MSGLTAEACHPVADKKKELKMLQAQRDALELEASVISSELNSPGPNGEAP
VGVRGSLVDPGGFPLAGFDLFNVREKRHRLNCIQTDHKAVMAKLEKSLHA
LHEISGQAQALRRPASSSNDTVVTNATLSASGREVGAVNSDGGIQLLPLA
KVNEVSGGSPAASAGLAVGDLVLRFGSIDLSHPKGMAGVVDVVRENEGRQ
VPVIVLRHGGMAGQSGLKELTLVPRTWAGRGLLGVHLVPP*
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mRNA from alignment at H-paniculata_contig6159:1023..5712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6159.13875.1 ID=mRNA_H-paniculata_contig6159.13875.1|Name=mRNA_H-paniculata_contig6159.13875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4690bp|location=Sequence derived from alignment at H-paniculata_contig6159:1023..5712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACTGTACGTCAATCAAAGATACATCGATACAATGAATTTTGTCAGTA AAAATAGCGGGGATCCTCACTACTGTTTGTAAAAACAGTGTGCTCGACGC GCCAACCGTTCCTAATGGTTGCTGGTATGATACGCTGCTGCACCGCCCAA GTGTCATAGGGTATGACTATTACAAGGGCACCCTCAAGGAGCAGGGCAAT AGTTAACCTTGTACCCAGCTCAGGACTCAGGGGCTTCTTCACATACAACA AGGGAAACTTCAGTAGTTTTTTCCCGGATAACCAGCTCATGGGCAAGCAC CGCACCGCACACTGTTCAACGTCGCTTGATTTTCCTCATCGGAATTAGGG GTGATTCGTACTCTCGCCTCCGATGCAGAAAGCAACAGCAATAAAGCTAC CCAATCTCGCCGCCTACTGCCCACTTCCACGTGTGTGATACAACATAACT TCACAACTTGCAATTAATCCTGCCCCTGCTGGCAGGCACAGACGATCAGG AATTGCTTGTCCCCTGCTTGTGTAGCAGCAACACGTGTGTACCCGAAGCA TGTCTGGATTGACTGCTGAGGCCTGCCATCCGGTGGCCGACAAAAAGAAG GAGCTCAAGATGCTGCAGGCGCAGAGAGATGCTCTCGAACTGGAGGCAAG CGTGATATCGAGCGAGCTAAATTCTCCAGGACCGAACGGCGAAGCTCCCG TGGGCGTGCGGGGGAGTCTCGTTGACCCTGGCGGGTTCCCGTTGGCAGGC TTCGATCTGTTCAACGTTCGAGAAAAGCGGCATCGGTGAGTGACAGGTAC AGCTGAGGGGAGGCGGAGACGGAAGAAGTGGGGGGTACTCATGTTTCGCA TGTCCTAGTTCATAGACCATTGACCACGCGTCCTCGGGAGAACGGAGTTT TTTTCTTGTTTGAACGATTACCGATGGCCAATCGCTCCTTTCTACGCTGT CAAGAGTCTTTTCCCTACCCTCTCTACCTCAGTCCTCGCTTGTCTCCTAG AACGGCTATAGCCTTCGGCAGGGGAGGGCTTATCTACAAACTGATTAAAC TTGGCCGGGGGGGAGTGATGCTTCCAAAGAAATATGATAACCGTAAAGGA AAATCGAGGCTTGCCCAGCATATTCAAGCTGCTGAATTACTTGGTTATTA TCGTCGAACTGACCAAACTAGGGCACCCTTTCACCCACTGGGAACTTCAT TCGTGCCAGTAAGTCAACCCACTTGCCACAGTCAAACAGTAGATTCATAG CGCTCATCTAGTAAGTATGGGTACCCATGTTGAGGGTATGCCTCTGACCT CAAATCTCTGTTGTGCACACTTACAAGAAAAAATTGATCAATAGAGCGGG GGGACATATTGCAGCGTGTTCTCTGTGTACGGTTTTGGCTACAACACGTG TTGGATCTCTACTGCAGGACTACTCGAACGGATATATTTATGTTAAACCG GGGTGCTATTGATAGACGCGAATAGAGTATGACCCATTAAATAGTCGCAG TCAAAGTGTTGAGGTTGCATGCATTCTAGCGCTTCCACGGTTTCATTCCG TTGTGAAAAGAGGGAATATCCTACATTCGCTCGATATTGGGAAACGATAT TTTTATTCAGCTGTTTTTTTTAACATGATACATGAATACTCCATTACGAA TGCCTGTCGGTAATTGGCTAACCATGGTAGAATAGGCTTGAGGAGGGACT GATTTTCTGCCGTGACTATTTTCGTTTTTTGTTTTTTGCTGTTCTCCCTG ACATGACATGGCATGAGATGACAGGCCATTGTTGTAAGTCAGGTGGGTAG TAGGCGCGTGTGTGCCCGCTATGTAGGTTTGGTAGGGATTCTTTTACTGG AGTCTGTATTTCTCCCCTATTCTTTGTCCACTAGGTCGATCTGCTTCGTG AGCTTCCTCTTTGGATAGGGGATCTGGACCACATTGAAATGTCCCATTGC ATCTTGATAGGACCGACCACTGACTCACTGTTCCTGTGGGGGCAGGCATC TGGTTGATGTTTGGGCGGGGTAAAAAACCCGATGGGTGCAGGATGTCCAG CAGTAAGAACTGGTGAAGTGCAGTGCCATGAGCGTAGGCTGATGTAGTAG CCCTAAGTGAATATCCACTTGTGGGTTGACTCTAACATAGTTCTTGATAT TTTCGGTTCTAATCCGTCCTGGGTTTGTTGATGTTTTCTTCTGCCACCCT GCCGTTATCGCCAGTTTGAATTGCATCCAAACGGATCACAAGGCTGTCAT GGCGAAGCTCGAGAAGTCGCTCCACGCATTACACGAGGTACGCACCTTTT CACTTATGGAATACTTCCTCATCAGGACCAAGCACTTGCTTTCTATCAAA ATGGAGACGCTGGCGTTATTTTTGGGATGGCGCCACGCACACGGGCCTCC GCGAAACTGTCTGTAAATTCGTTCTGTAGCACCTATATGAGGTGTGAGAC TAGACTAGACTACGGCCGGTGGGCTGGCTCATCAAACAGGCAACAGTTCA GGCAGTCCTCGTCGATTCACCGTGTGGTCACATTTGAGATAGGGTTAGAA ATTGTATCACTCGAAAAAAACCCGTTAAATAACAGAATATCGTGTTTATG GACCGTATGGAATACGTGATTTATCGTATTTCCACATTTTTTCCTGCGGC GATCTTCCATTATGTGCAAAATCAAAATATAATCCAAGATATTATATTTA ATTAAATATCACCAAAGTAAATTGCACAATATTCAATATTACATTACACG CTAAATCACACGATTTCCAACCCTGATTTGAGAGCAGTAGGCAGAGTTTC CCTTAGTTCGTCAAAAATCGATGTCTGTGCTCACTTGGTCTCAAGGTGAT TGTGCATGAATGTCTAGTGATAAGTGATGGAGAGGCACAATGTTTGGGAA TTGTAGACGCTATCGGGCTCCGATTTGGCACGGAGTTGACACCGGAAAGG GCGAGTTGTTCGAATTAGCATTATGGTTCTGTAGCTTCGCCCTGAACACG CAATCCTTCAAAACAACAAAGAGAAACTATTAGTGTCATTTTATCGGAGA CGAGCTGAAATAAACCCAATTCGCTGAGAGTCATCCCACCTGTAATTACA TGCACTTGCAAGTCAGCAGAGTCTCTGACTCTGTAATTATTCATTGGCAT GCCAGATCTCTGGACAGGCACAAGCACTACGCCGACCAGCGTCCTCATCT AATGACACTGTCGTGACGAACGCAACGCTGAGTGCATCCGGTCGTGAGGT GGGCGCCGTCAACAGCGACGGCGGCATACAATTGTTGCCCCTTGCCAAGG TCAACGAGGTGAGACATTGTGGTGGCATCTCTTTTGGCCTTGTCAGGTGT GTGCATCGTTCACCTGTTGACTGAAATCATCGACGTTCTTGACTCCAGAA CAGTTATACACTGGTGACTATTACGACTATCAACAATAAATAGTAGACAG CCTACGGCTACGCCAGTAACGTACCTAATACAGACCTCCTGGGGACTATC GTCATCAACCATCATCGTCACGTTAGCGTGCCAAGTAATAGTGATCACCT GTCGTCTACCCTTGGCCCCCACCCTCTCGGCAACTAACTGTCTTCTCACA AGCAGTGGTTCATACTAGCACGAAAAGTAGCCACGAGTCTTGGTGCTGGT GTATGGAGCTGGCGCTGTCTTTCAAGCGACTAGCTCCACGTGCACAGCCT GAGCATGCGTCTCTTTGTCGACTATTATCACTGATTTATTATATAGTATA TACTAAAGAACCTCAAGGTGGACATGTTTTGCTCACTCGTGTGATGCTGT AGGGTTTGGGGCTGAGTGACAGCTAGGCTCATCGCGATGGGACCCTGAAA TTTTCGCGGGCACTGCTCACTCGTAAACGCTCATGACTTGAATATCGGTC ACTACCACCACTACCACTACAAGACGTTTTAATGTATTTGCCTCCCTGGA AAAACGACACGTATGCCCATGCCAACATTGCCAGGTGTCTGGTGGCTCCC CCGCAGCCTCAGCAGGATTGGCAGTGGGAGACTTGGTTCTACGCTTCGGA AGTATTGACCTATCACATCCCAAGGGAATGGCCGGTGTTGTAGACGTTGT ACGCGAGAACGAGGGAAGACAGGTGCCCGTTATCGTGCTTAGGCATGGCG GCATGGCAGGCCAGTCTGGCTTGAAGGAACTCACGCTTGTGCCTAGGACG TGGGCTGGACGGGGGCTTTTGGGCGTGCACCTTGTTCCTCCTTGACCGTA CTTGTACCTCAGTGTGTTTGTAGTTTTGGCGAAGGGAGTGAAGTGATTGG ATTTTGCGGGAGCGGGGTTCTATGTCTGTAAATAATAAGATAGTAACAAG AGACGGTTGATGTCTGGGTTGAGCGGAATTGCAATAACTTGAACTGGACA TGGTATTGTAGTATTGAACCGCTTGTCCCACCACAGGTCGAGGCAGTACA TACATGAGCTTCGCCATGAGACCAATGGGTCTTGTAATGTCATGCCCTAG CGTGTGCGATCTTGTGAAAAATGTGCTGATCTCCGCTCTATGATGCCCGA CTTCGCTTCATCCTATGACCGGTTCATCCATGTACCCGTGATGTGGCTTT CCAAACGAGAAAGAGGAAAGCGAGAAAATATACACACAGTAGTTTCGTGT GTTTTTTGTCAAAGTTCGAAGGTTTTTGAGTGGAACACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig6159:1023..5712+

>mRNA_H-paniculata_contig6159.13875.1 ID=mRNA_H-paniculata_contig6159.13875.1|Name=mRNA_H-paniculata_contig6159.13875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig6159:1023..5712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGATTGACTGCTGAGGCCTGCCATCCGGTGGCCGACAAAAAGAA
GGAGCTCAAGATGCTGCAGGCGCAGAGAGATGCTCTCGAACTGGAGGCAA
GCGTGATATCGAGCGAGCTAAATTCTCCAGGACCGAACGGCGAAGCTCCC
GTGGGCGTGCGGGGGAGTCTCGTTGACCCTGGCGGGTTCCCGTTGGCAGG
CTTCGATCTGTTCAACGTTCGAGAAAAGCGGCATCGATGTCTGGATTGAC
TGCTGAGGCCTGCCATCCGGTGGCCGACAAAAAGAAGGAGCTCAAGATGC
TGCAGGCGCAGAGAGATGCTCTCGAACTGGAGGCAAGCGTGATATCGAGC
GAGCTAAATTCTCCAGGACCGAACGGCGAAGCTCCCGTGGGCGTGCGGGG
GAGTCTCGTTGACCCTGGCGGGTTCCCGTTGGCAGGCTTCGATCTGTTCA
ACGTTCGAGAAAAGCGGCATCGTTTGAATTGCATCCAAACGGATCACAAG
GCTGTCATGGCGAAGCTCGAGAAGTCGCTCCACGCATTACACGAGTTTGA
ATTGCATCCAAACGGATCACAAGGCTGTCATGGCGAAGCTCGAGAAGTCG
CTCCACGCATTACACGAGATCTCTGGACAGGCACAAGCACTACGCCGACC
AGCGTCCTCATCTAATGACACTGTCGTGACGAACGCAACGCTGAGTGCAT
CCGGTCGTGAGGTGGGCGCCGTCAACAGCGACGGCGGCATACAATTGTTG
CCCCTTGCCAAGGTCAACGAGATCTCTGGACAGGCACAAGCACTACGCCG
ACCAGCGTCCTCATCTAATGACACTGTCGTGACGAACGCAACGCTGAGTG
CATCCGGTCGTGAGGTGGGCGCCGTCAACAGCGACGGCGGCATACAATTG
TTGCCCCTTGCCAAGGTCAACGAGGTGTCTGGTGGCTCCCCCGCAGCCTC
AGCAGGATTGGCAGTGGGAGACTTGGTTCTACGCTTCGGAAGTATTGACC
TATCACATCCCAAGGGAATGGCCGGTGTTGTAGACGTTGTACGCGAGAAC
GAGGGAAGACAGGTGCCCGTTATCGTGCTTAGGCATGGCGGCATGGCAGG
CCAGTCTGGCTTGAAGGAACTCACGCTTGTGCCTAGGACGTGGGCTGGAC
GGGGGCTTTTGGGCGTGCACCTTGTTCCTCCTTGAGTGTCTGGTGGCTCC
CCCGCAGCCTCAGCAGGATTGGCAGTGGGAGACTTGGTTCTACGCTTCGG
AAGTATTGACCTATCACATCCCAAGGGAATGGCCGGTGTTGTAGACGTTG
TACGCGAGAACGAGGGAAGACAGGTGCCCGTTATCGTGCTTAGGCATGGC
GGCATGGCAGGCCAGTCTGGCTTGAAGGAACTCACGCTTGTGCCTAGGAC
GTGGGCTGGACGGGGGCTTTTGGGCGTGCACCTTGTTCCTCCTTGA
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