mRNA_H-paniculata_contig61471.13856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61471.13856.1
Unique NamemRNA_H-paniculata_contig61471.13856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61471.13856.1 vs. uniprot
Match: D7G511_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G511_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 3.960e-5
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   22 MLLGSFIRRR---------CNIAWTLPGANVSWRRVQSSYGALSQTPSALPDVCHLPVMTISWDAMRALDKAYIE 219
            MLL    RRR          ++  ++ G++ S R  Q++  + S+  S LPDVC LPV+T SW A+++LD AY E
Sbjct:    1 MLLSGVARRRFAAPGALRAASVRRSVLGSSNSTRGCQAAPRSASRLASTLPDVCGLPVVTTSWQAIKSLDDAYTE 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61471.13856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G511_ECTSI3.960e-538.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61471contigH-paniculata_contig61471:78..302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size225
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.7112532-CDS-H-paniculata_contig61471:77..2811622930692.7112532-CDS-H-paniculata_contig61471:77..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61471 78..281 -
1691481408.8595297-CDS-H-paniculata_contig61471:77..2811691481408.8595297-CDS-H-paniculata_contig61471:77..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61471 78..281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.7392137-UTR-H-paniculata_contig61471:281..3021622930692.7392137-UTR-H-paniculata_contig61471:281..302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig61471 282..302 -
1691481408.8676066-UTR-H-paniculata_contig61471:281..3021691481408.8676066-UTR-H-paniculata_contig61471:281..302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig61471 282..302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61471.13856.1prot_H-paniculata_contig61471.13856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61471 78..281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61471.13856.1

>prot_H-paniculata_contig61471.13856.1 ID=prot_H-paniculata_contig61471.13856.1|Name=mRNA_H-paniculata_contig61471.13856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MLLGSFIRRRCNIAWTLPGANVSWRRVQSSYGALSQTPSALPDVCHLPVM
TISWDAMRALDKAYIEVS
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mRNA from alignment at H-paniculata_contig61471:78..302-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61471.13856.1 ID=mRNA_H-paniculata_contig61471.13856.1|Name=mRNA_H-paniculata_contig61471.13856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig61471:78..302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACCTCCGCGGAGAGCTAAGATGTTACTCGGAAGCTTTATTCGGCGCCG
CTGTAATATTGCCTGGACGTTGCCTGGCGCCAATGTTTCTTGGAGAAGAG
TTCAGAGCAGCTATGGGGCACTGAGCCAAACGCCGTCGGCACTGCCTGAT
GTGTGTCATTTGCCTGTCATGACCATCAGCTGGGACGCAATGCGAGCGCT
GGACAAGGCGTACATCGAGGTAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig61471:78..302-

>mRNA_H-paniculata_contig61471.13856.1 ID=mRNA_H-paniculata_contig61471.13856.1|Name=mRNA_H-paniculata_contig61471.13856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig61471:78..302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACTCGGAAGCTTTATTCGGCGCCGCTGTAATATTGCCTGGACGTT
GCCTGGCGCCAATGTTTCTTGGAGAAGAGTTCAGAGCAGCTATGGGGCAC
TGAGCCAAACGCCGTCGGCACTGCCTGATGTGTGTCATTTGCCTGTCATG
ACCATCAGCTGGGACGCAATGCGAGCGCTGGACAAGGCGTACATCGAGGT
AAGTATGTTACTCGGAAGCTTTATTCGGCGCCGCTGTAATATTGCCTGGA
CGTTGCCTGGCGCCAATGTTTCTTGGAGAAGAGTTCAGAGCAGCTATGGG
GCACTGAGCCAAACGCCGTCGGCACTGCCTGATGTGTGTCATTTGCCTGT
CATGACCATCAGCTGGGACGCAATGCGAGCGCTGGACAAGGCGTACATCG
AGGTAAGT
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