mRNA_H-paniculata_contig6138.13846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6138.13846.1
Unique NamemRNA_H-paniculata_contig6138.13846.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: D7FVL9_ECTSI (Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL9_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.100e-107
Identity = 183/215 (85.12%), Postives = 190/215 (88.37%), Query Frame = 3 
Query:  654 AAGESNEQPDGNAATP---EGGEATDGAAAAAQPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQ 1289
            AAG    +  G  ATP   EGGE    AAAA  PS+NNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAAT AINGMAIDRKRIKVS+ARPSSKDIKNSKLYVTNLPDHF+QDQV+EVF+Q      CRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGH LPGAKKGLLVKFAEDHHRR+QRQEQGQ
Sbjct:   74 AAGAKASEESGGDATPKEAEGGETA--AAAAGTPSENNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATLAINGMAIDRKRIKVSIARPSSKDIKNSKLYVTNLPDHFSQDQVVEVFEQ------CRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHVLPGAKKGLLVKFAEDHHRRVQRQEQGQ 280
[Close]
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A7S3HB55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HB55_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.160e-43
Identity = 86/178 (48.31%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:  735 AAQPSQN-NLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRR 1265
            A Q  +N NLI+NYLP  + ++ L+ +F   G++   KVV DR+T KS+GYGFVKF   + A  A   +NG  ID K +KVSVARP+S +I+N KLYVTNLP  + +  VI +FQ++G IIECR L D  +  ++  AFVQFD + +A +AL  +NG  L G ++GL+VK+AED H++
Sbjct:   29 ARQAMENCNLIVNYLPHDIDDLALKGLFVEFGEIVSAKVVTDRNTKKSLGYGFVKFLCEDDAKLAIQRLNGFTIDNKCLKVSVARPASLEIRNCKLYVTNLPKDYTEIDVIHLFQEFGDIIECRVLKDRNSRTNKGVAFVQFDNKTQANNALS-LNGCQLEGGQRGLVVKYAEDQHKK 205
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BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A667Y9X8_9TELE (ELAV-like protein n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Y9X8_9TELE)

HSP 1 Score: 152 bits (383), Expect = 2.410e-38
Identity = 77/182 (42.31%), Postives = 119/182 (65.38%), Query Frame = 3 
Query:  747 SQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 1292
            ++ NLI+NYLP ++++ ELR++F+  GD+   K++ D+  G S+GYGFV F     A  A + +NG+ +  K IKVS ARPSS  IK++ LY++ LP    Q  + E+F +YG+II  R LVD  + +SR  AF++FD R EA+DA+K++NGH  PG+ + + VKFA + ++    Q   Q+
Sbjct:   63 ARTNLIVNYLPQNMSQEELRSLFSSIGDVESAKLIRDKVAGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSYARPSSDAIKDANLYISGLPKTVTQQDLEEMFTRYGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAIKYLNGHKPPGSAEPITVKFAANPNQAKNSQLLSQL 244
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BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A6J2VBR9_CHACN (ELAV-like protein n=16 Tax=Actinopterygii TaxID=7898 RepID=A0A6J2VBR9_CHACN)

HSP 1 Score: 150 bits (380), Expect = 3.420e-38
Identity = 80/191 (41.88%), Postives = 120/191 (62.83%), Query Frame = 3 
Query:  720 DGAAAAAQPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 1292
            D  A  A+ ++ NLI+NYLP ++T+ ELR++F+  G++   K++ D+  G S+GYGFV +     A  A   +NG+ +  K IKVS ARPSS  IK++ LY++ LP    Q  V ++F +YG+II  R LVD  T +SR  AF++FD R EA+DA+K +NG   PGA + + VKFA + ++    Q   Q+
Sbjct:   23 DHMADEAKDAKTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAERAINTLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPKSMTQKDVEDMFSRYGRIINSRVLVDQATGLSRGVAFIRFDKRAEAEDAIKELNGQKPPGAAEPITVKFAANPNQAKNSQILSQI 213
[Close]
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A3B4URJ8_SERDU (ELAV-like protein n=21 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4URJ8_SERDU)

HSP 1 Score: 149 bits (377), Expect = 5.540e-38
Identity = 76/184 (41.30%), Postives = 120/184 (65.22%), Query Frame = 3 
Query:  741 QPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 1292
            + ++ NLI+NYLP  +++ ELR++F+  GD+   K++ D+  G S+GYGFV F     A  A + +NG+ +  K IKVS ARPSS  IK++ LY++ LP   +Q ++ ++F +YG II  R LVD  + +SR  AF++FD R EA+DA+K +NGH+ PG+ + + VKFA + ++    Q   Q+
Sbjct:   10 EDARTNLIVNYLPQSMSQDELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSDAERAISTLNGLRLQSKTIKVSYARPSSDMIKDANLYISGLPRTLSQPELEDMFARYGHIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAVKHLNGHTPPGSSEPITVKFAANPNQARNSQMMSQM 193
[Close]
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A672KVF2_SINGR (ELAV-like protein n=4 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KVF2_SINGR)

HSP 1 Score: 147 bits (370), Expect = 1.510e-37
Identity = 75/171 (43.86%), Postives = 114/171 (66.67%), Query Frame = 3 
Query:  741 QPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAED 1253
            + S+ NLI+NYLP ++T+ EL+++F   G++   K+V D+ TG+S+GYGFV +   + A  A   +NG+ +  K IKVS ARPSS  I+++ LYV+ LP    Q ++ ++F QYG+II  R LVD  T +SR   F++FD R EA++A+K +NG   PGA + + VKFA +
Sbjct:   40 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVEPKDAEKAINTLNGLRLQTKTIKVSFARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANN 210
[Close]
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A7E6EAG9_9CHIR (ELAV-like protein n=4 Tax=Amniota TaxID=32524 RepID=A0A7E6EAG9_9CHIR)

HSP 1 Score: 147 bits (370), Expect = 1.630e-37
Identity = 73/166 (43.98%), Postives = 112/166 (67.47%), Query Frame = 3 
Query:  750 QNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFA 1247
            + NLI+NYLP ++T+ ELR++F+  G++   K++ D+  G S+GYGFV + T + A  A   +NG+ +  K IKVS ARPSS+ IK++ LY++ LP +  Q  V ++F ++G+II  R LVD  T +SR  AF++FD R EA++A+   NGH  PG+ + + VKFA
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAVNTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
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BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: H2QF77_PANTR (ELAV-like protein n=20 Tax=Amniota TaxID=32524 RepID=H2QF77_PANTR)

HSP 1 Score: 148 bits (373), Expect = 1.680e-37
Identity = 76/187 (40.64%), Postives = 119/187 (63.64%), Query Frame = 3 
Query:  750 QNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQVMKLLCP 1310
            + NLI+NYLP ++T+ ELR++F+  G++   K++ D+  G S+GYGFV + T + A  A   +NG+ +  K IKVS ARPSS+ IK++ LY++ LP    Q  V ++F ++G+II  R LVD  T +SR  AF++FD R EA++A+   NGH  PG+ + + VKFA + ++    Q    V ++  P
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNAQRFRWVGRVFSP 205
[Close]
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A3Q2YEX9_HIPCM (ELAV-like protein n=8 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2YEX9_HIPCM)

HSP 1 Score: 149 bits (376), Expect = 1.800e-37
Identity = 77/182 (42.31%), Postives = 118/182 (64.84%), Query Frame = 3 
Query:  747 SQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 1292
            ++ NLIINYLP  + + ELRN+F+  G++   K++ D+  G S+GYGFV F     A  A +++NG+ +  K IKVS ARPSS  IK++ LY++ LP   +Q  + ++F +YG II  R LVD  + +SR  AF++FD R EA+DA+K +NGH+ PG+ + + VKFA + ++    Q   Q+
Sbjct:   50 ARTNLIINYLPQSMNQDELRNLFSNVGEVESAKLIRDKVAGNSLGYGFVNFVNASDAERAISSLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPRTISQQDLEDMFARYGHIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKQLNGHTPPGSAEPITVKFAANPNQARNSQLMSQM 231
[Close]
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A3B3C9V1_ORYME (ELAV-like protein n=8 Tax=Oryzias TaxID=8089 RepID=A0A3B3C9V1_ORYME)

HSP 1 Score: 149 bits (376), Expect = 1.800e-37
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 3 
Query:  747 SQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 1292
            +Q NLI+NYLP  +T+ ELR++F+  G++   K++ D+  G S+GYGFV F     A  A + +NG+ +  K IKVS ARPSS  IK++ LY++ LP    Q  + ++F  +G+II  R LVD  + +SR  AF++FD R EA+DA+K +NGH+ PG  + + VKFA + ++    Q   Q+
Sbjct:   49 AQTNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSDTIKDANLYISGLPRTLGQQDLEDMFASFGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAVKHLNGHTPPGGSEPITVKFAVNPNQARNSQMMSQM 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL9_ECTSI1.100e-10785.12Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S3HB55_9STRA8.160e-4348.31Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A667Y9X8_9TELE2.410e-3842.31ELAV-like protein n=2 Tax=Myripristis murdjan TaxI... [more]
A0A6J2VBR9_CHACN3.420e-3841.88ELAV-like protein n=16 Tax=Actinopterygii TaxID=78... [more]
A0A3B4URJ8_SERDU5.540e-3841.30ELAV-like protein n=21 Tax=Percomorphaceae TaxID=1... [more]
A0A672KVF2_SINGR1.510e-3743.86ELAV-like protein n=4 Tax=Sinocyclocheilus grahami... [more]
A0A7E6EAG9_9CHIR1.630e-3743.98ELAV-like protein n=4 Tax=Amniota TaxID=32524 RepI... [more]
H2QF77_PANTR1.680e-3740.64ELAV-like protein n=20 Tax=Amniota TaxID=32524 Rep... [more]
A0A3Q2YEX9_HIPCM1.800e-3742.31ELAV-like protein n=8 Tax=Syngnathidae TaxID=72045... [more]
A0A3B3C9V1_ORYME1.800e-3741.76ELAV-like protein n=8 Tax=Oryzias TaxID=8089 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6138contigH-paniculata_contig6138:5829..12476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.0
Seed ortholog evalue7.3e-92
Seed eggNOG ortholog2880.D7FVL9
KEGG koko:K13208
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03041
Exons6
Model size1313
Cds size915
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930691.3736312-UTR-H-paniculata_contig6138:5828..62261622930691.3736312-UTR-H-paniculata_contig6138:5828..6226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6138 5829..6226 +
1691481408.1504042-UTR-H-paniculata_contig6138:5828..62261691481408.1504042-UTR-H-paniculata_contig6138:5828..6226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6138 5829..6226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930691.3905802-CDS-H-paniculata_contig6138:6226..65321622930691.3905802-CDS-H-paniculata_contig6138:6226..6532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 6227..6532 +
1691481408.1617892-CDS-H-paniculata_contig6138:6226..65321691481408.1617892-CDS-H-paniculata_contig6138:6226..6532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 6227..6532 +
1622930691.4092708-CDS-H-paniculata_contig6138:7343..74451622930691.4092708-CDS-H-paniculata_contig6138:7343..7445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 7344..7445 +
1691481408.174273-CDS-H-paniculata_contig6138:7343..74451691481408.174273-CDS-H-paniculata_contig6138:7343..7445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 7344..7445 +
1622930691.4279983-CDS-H-paniculata_contig6138:8611..87761622930691.4279983-CDS-H-paniculata_contig6138:8611..8776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 8612..8776 +
1691481408.1852849-CDS-H-paniculata_contig6138:8611..87761691481408.1852849-CDS-H-paniculata_contig6138:8611..8776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 8612..8776 +
1622930691.4424284-CDS-H-paniculata_contig6138:11108..112161622930691.4424284-CDS-H-paniculata_contig6138:11108..11216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 11109..11216 +
1691481408.195232-CDS-H-paniculata_contig6138:11108..112161691481408.195232-CDS-H-paniculata_contig6138:11108..11216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 11109..11216 +
1622930691.4644656-CDS-H-paniculata_contig6138:11712..118111622930691.4644656-CDS-H-paniculata_contig6138:11712..11811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 11713..11811 +
1691481408.20528-CDS-H-paniculata_contig6138:11712..118111691481408.20528-CDS-H-paniculata_contig6138:11712..11811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 11713..11811 +
1622930691.4787924-CDS-H-paniculata_contig6138:12341..124761622930691.4787924-CDS-H-paniculata_contig6138:12341..12476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 12342..12476 +
1691481408.2168887-CDS-H-paniculata_contig6138:12341..124761691481408.2168887-CDS-H-paniculata_contig6138:12341..12476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6138 12342..12476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6138.13846.1prot_H-paniculata_contig6138.13846.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6138 6227..12476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6138.13846.1

>prot_H-paniculata_contig6138.13846.1 ID=prot_H-paniculata_contig6138.13846.1|Name=mRNA_H-paniculata_contig6138.13846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp
MATVVAQLDMSPAPAATVPAPGGYPGAAQPRSAVQTDTGGPGKEIDEPKK
APSGAEGDPADAEVEATTATAAVVPPESKGDSTADAAGESNEQPDGNAAT
PEGGEATDGAAAAAQPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKV
VYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSK
DIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAF
VQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQVMK
LLCP*
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mRNA from alignment at H-paniculata_contig6138:5829..12476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6138.13846.1 ID=mRNA_H-paniculata_contig6138.13846.1|Name=mRNA_H-paniculata_contig6138.13846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6648bp|location=Sequence derived from alignment at H-paniculata_contig6138:5829..12476+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTCAGTCCATGCCCAGACAGACAGTGTCACTATTATAGATCTTGCAA
ATTGCCCCTACCATTGGCAACTGCAACATCTACAAACGCTGTCCACCGTG
TGATCATTAGTGTCAAGTATCTCCTACCACCCGCAGCGCGGTAGAAGACC
AAACACCTTTGCTCTGTTGCCTTGGACATCTGCACGTTACTGCCCCTTGT
GGCACGGTGTGACATCACCCTCATATAGAACGCATCTCAAGCGCCGAAAA
CGTAGAGTCCCATCTTTTTTTCGAAAGGCCCCAGCCAGATTTGGTGCTGG
AGACTGGAGAGACACGCACGGTGTGCACAATACCTCTTCCTCGCCGCCCC
GCCTCACCACCGTGAGCCTTTGTATTCGAAGACTGAATTCCCTGTAGAAT
GGCGACTGTTGTTGCACAGCTGGACATGTCTCCGGCGCCTGCCGCCACCG
TACCTGCGCCAGGAGGATACCCAGGGGCCGCTCAACCGCGATCTGCGGTG
CAGACAGACACAGGAGGACCAGGCAAAGAAATCGACGAGCCAAAGAAGGC
ACCAAGCGGGGCCGAGGGCGATCCCGCAGACGCTGAAGTAGAGGCAACCA
CCGCTACAGCGGCTGTAGTACCTCCAGAGTCCAAGGGCGACAGCACAGCG
GATGCTGCTGGCGAAAGCAACGAACAGCCAGATGGCAACGCGGCAACCCC
AGAGGTGAGAGCCAGCCACAGTCCTTTCTGACACGTTTCAAAATGAAACA
GACAATACAGACACACGAAGGGGAGGGCGGCCACAGTGCATCAGCGCGTG
CACGTCGTGTATGGTGCACATGATGACAGTATCAGGATCGGCGGAGTGTC
GAAAGGCAGCGTCATGAAGACTTTTCCTTGTATACGTCTGTATGCGTGGA
AAAGAAGGGAGATGCTGCTGTTGGAGCAGCTCACGCGTCTGATACAACCC
ACCTGCGCCGGAGTCGTAGCACGCGAGCGAGCATGTCATGCGTCGTACAC
ATTTCATACATCCGTCGGAAAATATGGATGTGATCCACACACCGCTGCAT
GTAGTGTTTTTCGTTAGGAAATGAGAGGATTGTTTGCTCTGTAAATGTCG
CCCCGTCCTGTGTGGTAGCCAGTGTGGCTCACCCGAACGACTTGCTGTGT
GCTCGGTCGCATACCAGCGTCGCGTAGCAAACAAATTGCTGCCCAATTCC
ATCTTACGCCTTTCCCCCCCTGGTGGTTGCTGTGCGCGCGCTGGCCGTAC
ATGCGTTCGTGTCTCCAAGCCACTGATCCGGAAGAATTTACCCGCAGCCA
TCTTCTGTATGTACCAGTGGCCTGCTGTCTGGTCATGTTTCCTTTCCGAT
GATACCCAACTTCAAAAAAGAAAATAGCTTCCCTGTACGCCAACTTGCTC
CCTTTCCCGATATGCGTCTGTATTTGCCCACCTGTTGCTTACCCACTCAC
ACGCGCGCGCGCACACACACACACAAATACATAAACTCACACGCTTTTTC
TTTCAAATGGACCAGGGTGGAGAAGCGACAGACGGTGCGGCCGCGGCTGC
GCAACCGAGTCAGAACAATCTGATCATCAATTATCTTCCGTCGCATGTAA
CGGAGATCGAACTGAGGGTGAGTGCGAGAAAAAAACACGAAAATAATCGT
ATCTTCTCAAAGAACATAACCCCATTGATAGCTGTTGTGCATGTCTTTTG
TTTGATGTTTCTTATATCACATGGTGACAAAACACGCTGTCCGCTGCAGA
GGGATACAATACCCTGTGAAGATGAGGGTAGGCATTTGCTCTTGTGTGAC
CACTTCGTCCCGGGAGCCGTTGGCTCTTGTTTCACCAACTGTTGGTCTGT
GTTTGGTGTGAACGTGTTGGGGTGTGCTGCTCTGTCTGATTGATGTACAT
GGTTCACCTGCATTCCGTGCGCCAAAAATTACGAGGGACCAACGGTTCAA
GATGAACGCAGGGTCTTTTTTTTCTCTCCCTTTTGCAAGAAAATGGTGGC
CGTGGTGTGTGTATGTTGATGAAACTATTTGCTCGCTTGGGTCGTGTCTT
TACAGACAGTATCACAGTGGAAGCAGTCTGTTGTGACGGTTCTTCATTCA
GGTGTAGCTACCAACTCCTTGCCGGGTTTTGCAGATCGTTGAGGGCTGTT
TGCAGTCCTGGCTGGCCCATGTGTAAATCGAAATGGTACCCACGGTTCAC
CATGTGAAAAGCCTCGAGAAAGTCGTCAGTGTCAACATGGAAGTATCGAG
TGTGGGACCTACTGCGGTCCTGTTGATCGCATTTTCGGATGCTTTTTGCT
TCTCTGGTCAACCGTGTTTTATGGAACAGCCCTTAACCAAGCGTAGGGGT
GTGACGGTGTTACTGGGTAAAACACGTCGGGAGAGCGAAAACGTCGCCTT
CGCCTGAAAAAACCATGGCTTTTTGCATACCAAAACCATATGTATCCACC
CGAGCAACATATCTTGAAGCTTTAGCTTGGCAACACCATTTCTGAACCAC
ACAGAAACACACCTGTCCCTACGATGTGGCATTGCGGTAGGTCCATCATA
CGGTAGCGTACAGAAAACGCCGTGCCTTCACTGCTTCTTTCGTGTGCTAT
ATGCTCTACCTACCCCAATCGTACTTTCTTTGCTCGACTGTACTGTGGAC
ATGGATAACATCAAGATGTGTACATTTCTGATCGTAACTGACTTTTCGCC
TGTACCATTGACTTCTTGCTAAACATCTATTCCCCACTGGGGAATTATCA
TCTGTTCAATGTGTTTGATTGTGGTGAGAGCAGAACATGTTTGCGGTGCA
TGGCGACTTGGCGCACGTAAAAGTAGTATACGACCGGTCGACGGGGAAGA
GCATGGGTTACGGGTTCGTGAAGTTTACGACGAATGAAGCAGCAGCGGCG
GCGACCGCGGCTATCAACGGCATGGCCATCGACCGTAAGCGGATAAAGGT
GTGTTGACTTTAATTTTATTGGTCTAGACACATCCTCTTGTCATAGTTTC
TAGTGAATTCTCGGGATGTTGCTTCATATCCGCCTGTTCTTGATCTTGGA
ACAACAAAATGCTCCGCCCCCTCTGTTCAGTGATGTCCCCTTTAATCATG
GAGCAGTACAACGTCTACTGTGTTGTGTTTGTGGCGTTTGTGTGATGTGT
AGCAGGGGTCGCGGACGTTCGTTGCGTTTTGTTAAGTCCCTTCCTTGCAG
CTTATTTGTGCAATTCAGTTCAGTGGTGTTGCTGAACATTTACAAGATGC
TCGGACAATACCGTCTGTAAACCTGCAATGATTCAGTAAACTTGGACGGG
CCTGTAACTGCAGTTCACGTAGGATGTACCCCTTGATCATTAACCATAGG
TATACGCATGTTTCTCAGGGAGTAAAGTATTTTAGTAGGAACTTGTCTGT
ACAGTGGCTCATTTGCTTTGCACATCTCGTAGAGCTCCCAAGCCACCAGG
CGATACATCATCGTAGATGATGAGCAGTGTTGTTGAGGGAAGTGAACAGG
GCCACGTTTACCCCCCCCCTGCATACTTCGAAGTCTTCAATAGGAAAATC
TTAAAGCACGTATATTCCGAGTTGGAAAAATATGGTTGCTGTTTTCGCTG
AGTTTTGTGGATTGGACTAGTAGTCATGCGATGATGGCTAGTGCACTGCT
GTTGGATAGCATGTCAGTGCAGCGCTCGTTTTTGTCGTCCAGCTATGATG
AATATATTATGGAAATAAAGTGCAAAGTGGACAAACGCGACCTCCATCAT
GTTGGAAGCGGAGAAAGATGCGAACTTTTATCCTGACGTCACGCTCTGAA
CCTCCCACAAACCAGGATTGACTACTAATCCTCAGCACCGCGAACGAATC
TTGCTGCGCTACTGATGGCCGTGAAAGTTGGAAATTCGGGGCTACGATGA
GTGAGACACCTGCTATCTTTAAAAATGATATGGTCACGATTAACTATAAC
TCGAGAACCGCAACGTTGGGACCCCTCTCCACCCTTGTGGCACCCACACC
CCGTAAATGTATTCACCGAGCGGTAAAAAAATCTGGGGCTGAGCTTGAGG
ACCGTGCAATGCCGTTCGGCGGTTCCATGGCCGCCTGCGCGGTAGGTCTT
TTCTGGGAAAAATCTTTGCCAACCGCAACAAATCATACAACCGTCGTGCA
CGTGTACTTTTGGAAATTGTTTAGTGTTCCCTCATGGAGCATTAAACAGC
GGTGAGCACCTTGATCAACCGCGCGTGAATACGTTCACACGGTCATGATA
CTGCAGTCGATTGGCTGCAGGGAACAGATACACCATAACACTCTTGTCCA
AAATTGCTGGTTTTTCTCGTGATATAAATAATCAACAACGGTATTAGTCA
ACCAGTTTATTTTGGTGTAGCGACCATTCGGTGTTGTCGAATATCGGTGC
TTCAGGCCAAAAACCAGCTCGAAATTATGAAGTTGAGACCCCCTTCACCC
CTGCACCCGACACACCGGTGTATTTCACGAGCCGGACAGGTTTACTTGGA
CGTGCTTTGAAAAATAGATGTAATGCGAAGTCCTGTCTCATAGACTGCAC
GGGTATTGCACTACGGGATAATTTTCATTGCGCATAAATATATATATTTC
TTGACATCCGCCGTCGTTTGGGCTATTTTGTTCGTCGATGCCGTCGTCGG
ATGTGCGGTTGGTCTGTTGTGGAAGTCTGTGCTAATCCCTTGAAATGTCA
TCTTCGTGCACGTGTACTTTTAAGGATTGCTTGCTTTCCGCTACGCAATA
AATCTCGCGGACACATTTTTTTATCTCCTGCTACACACATCCATATCTCA
CGGTCATGCCTTAAACTTGTGCTGGTCTAGGGCCACACTACAGAATAGAT
ATCTCCTCCATTTTGCTCGACGAAATCATGTAATGAAAATAATAAACCCA
ACACTAGGCATCCACGATAAGAGCTGTCGATAAGTTCTATTTCCAAGTAC
GTGCCCCGGGAACAGTCCCATTTGTTGTACCCTCGGCTGTGTGTGCGATG
AACGTTCATTTGTACTTTGATGAGTCGTTGAACTGTGAGAGTACTCAAGG
AGTAACCAAACAAAGATCACTTCCCCGAGGAAAATAACTGATCTTCCAAG
TTTGTGACCATCGAAATGCGAACAATGCTGCATGCTTCGAGGCCCAGGTG
TGTGTGTGTGTGCCCATGCTTCTGGCCGCCGCTTGCTGACAAACGTCATT
TTGTTTCTTTTGTTGAAACAAGCGTGTCCCATGAAACTACATGAGACACA
ATGTTTTCGATACAATGTTTTCCATCGCAGGTGAGCGTCGCGCGACCCTC
GTCAAAAGATATCAAGAATTCAAAGCTTTACGTGACCAACCTCCCGGACC
ACTTCAATCAAGATCAGGTCATCGAAGTGTTCCAGCAGGTGATGTACGAT
TGCGATGCTTAGCTCCGCTGACCTCGTTCTTCGCTACAATATGGTCAAGT
GTTATTCTGATGTCTGCGTTTATGTGTTGTTTTGGGCAGTGATCGACGCT
CGGAACAAGTTATCAGAACACATACATTAGCCGCCTGTTGCCGTCTAGTG
TTATATTGAGGGTGGATGACATGGACTAAATTTCAACTTCGCAGTATGGA
TGACACAGTACCTTGTTGGTCTTTAGCCGCATGCGTAACGAAACTTCATG
TTCATATTTGGAGTTCCGATATTGTACGATCACCCTGTACCTCGTTTTAT
AATGAGGGAGGCAGCGTCGTGGCTCTTGGGTTTATGGTCTTGGTGCTGAT
TCGGCCTTGACAATTGTAGACTTACATCGAGTTTATCGTGGATGCAGAGG
TAGCTTGCACTAAATCCTGTGAAATACATTTTGTTACTCTTCGAACGGGA
CTAAACTGTCCGCGTGTATTTCCTGCCGTTGCAGTATGGAAAAATCATCG
AATGTCGGACACTGGTAGACCCGAAAACGACCATCAGCCGCTGCACGGCT
TTCGTACAGTTCGACACAAGACGGGAGGCCAAGGTGAACTAAAATATTTC
TCATGGACACTAGTGGGAGATGTTGTGCACGGACACAGTAATAGATAACG
CATCCACCACCCTCACTTGCTCCGGGATGCGATTGTACACTTGAACAATC
GACAAGTATGACACATTATGATGGGATTGTTGAAAACAATGTAAGTGAAT
TGGTGACATTATCCGGGCCAAAAGTGGATTCATGAGTTCCGCTATATGTT
AATTTCGTCCGAGTAATGGAAGATCGTACGCTCGCCAAACATCGCCTGTG
ACGCCAAGGTCCCGACTCAGGCTTGATAAAGTTGATGTAGAAAGATGAAT
CAATTCATGAAATGCTTTCCGAATACTGTTTGAAATTTGTTAGTAGGTCA
CTAACCCGCCCCTTGACAGATCGGTATTTCATTGAATGGTTGAAACTTTA
CCCGAAAACGAGTTGTACGAAGAGTCGCACAGAAACTTTTGCATGAGTGA
TGTTTTTGTGGCTTGAATTCCCCTTCTCGCTTGCCTGTGATGGTTTCATC
ACCTCTTGAACAGGACGCACTCAAGTTCATGAACGGACACAGTCTTCCCG
GCGCGAAAAAAGGTCTCCTCGTGAAGTTTGCGGAGGATCATCACCGTCGT
CTACAAAGGCAGGAACAGGGGCAGGTGATGAAATTACTATGCCCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6138:5829..12476+

>mRNA_H-paniculata_contig6138.13846.1 ID=mRNA_H-paniculata_contig6138.13846.1|Name=mRNA_H-paniculata_contig6138.13846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at H-paniculata_contig6138:5829..12476+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACTGTTGTTGCACAGCTGGACATGTCTCCGGCGCCTGCCGCCAC
CGTACCTGCGCCAGGAGGATACCCAGGGGCCGCTCAACCGCGATCTGCGG
TGCAGACAGACACAGGAGGACCAGGCAAAGAAATCGACGAGCCAAAGAAG
GCACCAAGCGGGGCCGAGGGCGATCCCGCAGACGCTGAAGTAGAGGCAAC
CACCGCTACAGCGGCTGTAGTACCTCCAGAGTCCAAGGGCGACAGCACAG
CGGATGCTGCTGGCGAAAGCAACGAACAGCCAGATGGCAACGCGGCAACC
CCAGAGATGGCGACTGTTGTTGCACAGCTGGACATGTCTCCGGCGCCTGC
CGCCACCGTACCTGCGCCAGGAGGATACCCAGGGGCCGCTCAACCGCGAT
CTGCGGTGCAGACAGACACAGGAGGACCAGGCAAAGAAATCGACGAGCCA
AAGAAGGCACCAAGCGGGGCCGAGGGCGATCCCGCAGACGCTGAAGTAGA
GGCAACCACCGCTACAGCGGCTGTAGTACCTCCAGAGTCCAAGGGCGACA
GCACAGCGGATGCTGCTGGCGAAAGCAACGAACAGCCAGATGGCAACGCG
GCAACCCCAGAGGGTGGAGAAGCGACAGACGGTGCGGCCGCGGCTGCGCA
ACCGAGTCAGAACAATCTGATCATCAATTATCTTCCGTCGCATGTAACGG
AGATCGAACTGAGGGGTGGAGAAGCGACAGACGGTGCGGCCGCGGCTGCG
CAACCGAGTCAGAACAATCTGATCATCAATTATCTTCCGTCGCATGTAAC
GGAGATCGAACTGAGGAACATGTTTGCGGTGCATGGCGACTTGGCGCACG
TAAAAGTAGTATACGACCGGTCGACGGGGAAGAGCATGGGTTACGGGTTC
GTGAAGTTTACGACGAATGAAGCAGCAGCGGCGGCGACCGCGGCTATCAA
CGGCATGGCCATCGACCGTAAGCGGATAAAGAACATGTTTGCGGTGCATG
GCGACTTGGCGCACGTAAAAGTAGTATACGACCGGTCGACGGGGAAGAGC
ATGGGTTACGGGTTCGTGAAGTTTACGACGAATGAAGCAGCAGCGGCGGC
GACCGCGGCTATCAACGGCATGGCCATCGACCGTAAGCGGATAAAGGTGA
GCGTCGCGCGACCCTCGTCAAAAGATATCAAGAATTCAAAGCTTTACGTG
ACCAACCTCCCGGACCACTTCAATCAAGATCAGGTCATCGAAGTGTTCCA
GCAGGTGAGCGTCGCGCGACCCTCGTCAAAAGATATCAAGAATTCAAAGC
TTTACGTGACCAACCTCCCGGACCACTTCAATCAAGATCAGGTCATCGAA
GTGTTCCAGCAGTATGGAAAAATCATCGAATGTCGGACACTGGTAGACCC
GAAAACGACCATCAGCCGCTGCACGGCTTTCGTACAGTTCGACACAAGAC
GGGAGGCCAAGTATGGAAAAATCATCGAATGTCGGACACTGGTAGACCCG
AAAACGACCATCAGCCGCTGCACGGCTTTCGTACAGTTCGACACAAGACG
GGAGGCCAAGGACGCACTCAAGTTCATGAACGGACACAGTCTTCCCGGCG
CGAAAAAAGGTCTCCTCGTGAAGTTTGCGGAGGATCATCACCGTCGTCTA
CAAAGGCAGGAACAGGGGCAGGTGATGAAATTACTATGCCCTTAAGACGC
ACTCAAGTTCATGAACGGACACAGTCTTCCCGGCGCGAAAAAAGGTCTCC
TCGTGAAGTTTGCGGAGGATCATCACCGTCGTCTACAAAGGCAGGAACAG
GGGCAGGTGATGAAATTACTATGCCCTTAA
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