prot_H-paniculata_contig6138.13846.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6138.13846.1
Unique Nameprot_H-paniculata_contig6138.13846.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length305
Homology
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: D7FVL9_ECTSI (Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL9_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.020e-109
Identity = 183/215 (85.12%), Postives = 190/215 (88.37%), Query Frame = 0
Query:   86 AAGESNEQPDGNAATP---EGGEATDGAAAAAQPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQ 297
            AAG    +  G  ATP   EGGE    AAAA  PS+NNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAAT AINGMAIDRKRIKVS+ARPSSKDIKNSKLYVTNLPDHF+QDQV+EVF+Q      CRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGH LPGAKKGLLVKFAEDHHRR+QRQEQGQ
Sbjct:   74 AAGAKASEESGGDATPKEAEGGETA--AAAAGTPSENNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATLAINGMAIDRKRIKVSIARPSSKDIKNSKLYVTNLPDHFSQDQVVEVFEQ------CRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHVLPGAKKGLLVKFAEDHHRRVQRQEQGQ 280          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A7S3HB55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HB55_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.720e-44
Identity = 86/178 (48.31%), Postives = 121/178 (67.98%), Query Frame = 0
Query:  113 AAQPSQN-NLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRR 289
            A Q  +N NLI+NYLP  + ++ L+ +F   G++   KVV DR+T KS+GYGFVKF   + A  A   +NG  ID K +KVSVARP+S +I+N KLYVTNLP  + +  VI +FQ++G IIECR L D  +  ++  AFVQFD + +A +AL  +NG  L G ++GL+VK+AED H++
Sbjct:   29 ARQAMENCNLIVNYLPHDIDDLALKGLFVEFGEIVSAKVVTDRNTKKSLGYGFVKFLCEDDAKLAIQRLNGFTIDNKCLKVSVARPASLEIRNCKLYVTNLPKDYTEIDVIHLFQEFGDIIECRVLKDRNSRTNKGVAFVQFDNKTQANNALS-LNGCQLEGGQRGLVVKYAEDQHKK 205          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A667Y9X8_9TELE (ELAV-like protein n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Y9X8_9TELE)

HSP 1 Score: 152 bits (383), Expect = 1.000e-39
Identity = 77/182 (42.31%), Postives = 119/182 (65.38%), Query Frame = 0
Query:  117 SQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 298
            ++ NLI+NYLP ++++ ELR++F+  GD+   K++ D+  G S+GYGFV F     A  A + +NG+ +  K IKVS ARPSS  IK++ LY++ LP    Q  + E+F +YG+II  R LVD  + +SR  AF++FD R EA+DA+K++NGH  PG+ + + VKFA + ++    Q   Q+
Sbjct:   63 ARTNLIVNYLPQNMSQEELRSLFSSIGDVESAKLIRDKVAGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSYARPSSDAIKDANLYISGLPKTVTQQDLEEMFTRYGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAIKYLNGHKPPGSAEPITVKFAANPNQAKNSQLLSQL 244          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A6J2VBR9_CHACN (ELAV-like protein n=16 Tax=Actinopterygii TaxID=7898 RepID=A0A6J2VBR9_CHACN)

HSP 1 Score: 150 bits (380), Expect = 1.450e-39
Identity = 80/191 (41.88%), Postives = 120/191 (62.83%), Query Frame = 0
Query:  108 DGAAAAAQPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 298
            D  A  A+ ++ NLI+NYLP ++T+ ELR++F+  G++   K++ D+  G S+GYGFV +     A  A   +NG+ +  K IKVS ARPSS  IK++ LY++ LP    Q  V ++F +YG+II  R LVD  T +SR  AF++FD R EA+DA+K +NG   PGA + + VKFA + ++    Q   Q+
Sbjct:   23 DHMADEAKDAKTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAERAINTLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPKSMTQKDVEDMFSRYGRIINSRVLVDQATGLSRGVAFIRFDKRAEAEDAIKELNGQKPPGAAEPITVKFAANPNQAKNSQILSQI 213          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A3B4URJ8_SERDU (ELAV-like protein n=21 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4URJ8_SERDU)

HSP 1 Score: 149 bits (377), Expect = 2.400e-39
Identity = 76/184 (41.30%), Postives = 120/184 (65.22%), Query Frame = 0
Query:  115 QPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 298
            + ++ NLI+NYLP  +++ ELR++F+  GD+   K++ D+  G S+GYGFV F     A  A + +NG+ +  K IKVS ARPSS  IK++ LY++ LP   +Q ++ ++F +YG II  R LVD  + +SR  AF++FD R EA+DA+K +NGH+ PG+ + + VKFA + ++    Q   Q+
Sbjct:   10 EDARTNLIVNYLPQSMSQDELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSDAERAISTLNGLRLQSKTIKVSYARPSSDMIKDANLYISGLPRTLSQPELEDMFARYGHIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAVKHLNGHTPPGSSEPITVKFAANPNQARNSQMMSQM 193          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A672KVF2_SINGR (ELAV-like protein n=4 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KVF2_SINGR)

HSP 1 Score: 147 bits (370), Expect = 6.890e-39
Identity = 75/171 (43.86%), Postives = 114/171 (66.67%), Query Frame = 0
Query:  115 QPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAED 285
            + S+ NLI+NYLP ++T+ EL+++F   G++   K+V D+ TG+S+GYGFV +   + A  A   +NG+ +  K IKVS ARPSS  I+++ LYV+ LP    Q ++ ++F QYG+II  R LVD  T +SR   F++FD R EA++A+K +NG   PGA + + VKFA +
Sbjct:   40 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVEPKDAEKAINTLNGLRLQTKTIKVSFARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANN 210          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A7E6EAG9_9CHIR (ELAV-like protein n=4 Tax=Amniota TaxID=32524 RepID=A0A7E6EAG9_9CHIR)

HSP 1 Score: 147 bits (370), Expect = 7.450e-39
Identity = 73/166 (43.98%), Postives = 112/166 (67.47%), Query Frame = 0
Query:  118 QNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFA 283
            + NLI+NYLP ++T+ ELR++F+  G++   K++ D+  G S+GYGFV + T + A  A   +NG+ +  K IKVS ARPSS+ IK++ LY++ LP +  Q  V ++F ++G+II  R LVD  T +SR  AF++FD R EA++A+   NGH  PG+ + + VKFA
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAVNTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: H2QF77_PANTR (ELAV-like protein n=20 Tax=Amniota TaxID=32524 RepID=H2QF77_PANTR)

HSP 1 Score: 148 bits (373), Expect = 7.510e-39
Identity = 76/187 (40.64%), Postives = 119/187 (63.64%), Query Frame = 0
Query:  118 QNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQVMKLLCP 304
            + NLI+NYLP ++T+ ELR++F+  G++   K++ D+  G S+GYGFV + T + A  A   +NG+ +  K IKVS ARPSS+ IK++ LY++ LP    Q  V ++F ++G+II  R LVD  T +SR  AF++FD R EA++A+   NGH  PG+ + + VKFA + ++    Q    V ++  P
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNAQRFRWVGRVFSP 205          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A3Q2YEX9_HIPCM (ELAV-like protein n=8 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2YEX9_HIPCM)

HSP 1 Score: 149 bits (376), Expect = 7.830e-39
Identity = 77/182 (42.31%), Postives = 118/182 (64.84%), Query Frame = 0
Query:  117 SQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 298
            ++ NLIINYLP  + + ELRN+F+  G++   K++ D+  G S+GYGFV F     A  A +++NG+ +  K IKVS ARPSS  IK++ LY++ LP   +Q  + ++F +YG II  R LVD  + +SR  AF++FD R EA+DA+K +NGH+ PG+ + + VKFA + ++    Q   Q+
Sbjct:   50 ARTNLIINYLPQSMNQDELRNLFSNVGEVESAKLIRDKVAGNSLGYGFVNFVNASDAERAISSLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPRTISQQDLEDMFARYGHIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKQLNGHTPPGSAEPITVKFAANPNQARNSQLMSQM 231          
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Match: A0A3B3C9V1_ORYME (ELAV-like protein n=8 Tax=Oryzias TaxID=8089 RepID=A0A3B3C9V1_ORYME)

HSP 1 Score: 149 bits (376), Expect = 7.830e-39
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 0
Query:  117 SQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSKDIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAFVQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQV 298
            +Q NLI+NYLP  +T+ ELR++F+  G++   K++ D+  G S+GYGFV F     A  A + +NG+ +  K IKVS ARPSS  IK++ LY++ LP    Q  + ++F  +G+II  R LVD  + +SR  AF++FD R EA+DA+K +NGH+ PG  + + VKFA + ++    Q   Q+
Sbjct:   49 AQTNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSDTIKDANLYISGLPRTLGQQDLEDMFASFGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAVKHLNGHTPPGGSEPITVKFAVNPNQARNSQMMSQM 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6138.13846.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL9_ECTSI1.020e-10985.12Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S3HB55_9STRA2.720e-4448.31Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A667Y9X8_9TELE1.000e-3942.31ELAV-like protein n=2 Tax=Myripristis murdjan TaxI... [more]
A0A6J2VBR9_CHACN1.450e-3941.88ELAV-like protein n=16 Tax=Actinopterygii TaxID=78... [more]
A0A3B4URJ8_SERDU2.400e-3941.30ELAV-like protein n=21 Tax=Percomorphaceae TaxID=1... [more]
A0A672KVF2_SINGR6.890e-3943.86ELAV-like protein n=4 Tax=Sinocyclocheilus grahami... [more]
A0A7E6EAG9_9CHIR7.450e-3943.98ELAV-like protein n=4 Tax=Amniota TaxID=32524 RepI... [more]
H2QF77_PANTR7.510e-3940.64ELAV-like protein n=20 Tax=Amniota TaxID=32524 Rep... [more]
A0A3Q2YEX9_HIPCM7.830e-3942.31ELAV-like protein n=8 Tax=Syngnathidae TaxID=72045... [more]
A0A3B3C9V1_ORYME7.830e-3941.76ELAV-like protein n=8 Tax=Oryzias TaxID=8089 RepID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002343Paraneoplastic encephalomyelitis antigenPRINTSPR00961HUDSXLRNAcoord: 225..237
score: 53.08
coord: 119..134
score: 56.46
coord: 266..283
score: 40.0
coord: 210..225
score: 28.75
coord: 192..209
score: 60.37
coord: 176..191
score: 38.12
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 120..193
e-value: 4.6E-19
score: 79.3
coord: 206..281
e-value: 1.6E-19
score: 80.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 121..191
e-value: 3.3E-16
score: 58.9
coord: 207..273
e-value: 2.1E-15
score: 56.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 205..285
score: 16.313
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 119..197
score: 17.643
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 102..198
e-value: 6.2E-25
score: 89.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 199..287
e-value: 2.5E-22
score: 80.8
NoneNo IPR availablePANTHERPTHR10352:SF25FOUND IN NEURONS, ISOFORM A-RELATEDcoord: 105..289
NoneNo IPR availablePANTHERPTHR10352EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Gcoord: 105..289
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 114..199
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 199..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6138contigH-paniculata_contig6138:6227..12476 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6138.13846.1mRNA_H-paniculata_contig6138.13846.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6138 5829..12476 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6138.13846.1 ID=prot_H-paniculata_contig6138.13846.1|Name=mRNA_H-paniculata_contig6138.13846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp
MATVVAQLDMSPAPAATVPAPGGYPGAAQPRSAVQTDTGGPGKEIDEPKK
APSGAEGDPADAEVEATTATAAVVPPESKGDSTADAAGESNEQPDGNAAT
PEGGEATDGAAAAAQPSQNNLIINYLPSHVTEIELRNMFAVHGDLAHVKV
VYDRSTGKSMGYGFVKFTTNEAAAAATAAINGMAIDRKRIKVSVARPSSK
DIKNSKLYVTNLPDHFNQDQVIEVFQQYGKIIECRTLVDPKTTISRCTAF
VQFDTRREAKDALKFMNGHSLPGAKKGLLVKFAEDHHRRLQRQEQGQVMK
LLCP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002343Hud_Sxl_RNA
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf