mRNA_H-paniculata_contig61293.13833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO) HSP 1 Score: 223 bits (567), Expect = 1.620e-62 Identity = 123/276 (44.57%), Postives = 180/276 (65.22%), Query Frame = 1
Query: 4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
K IF+RK+K DG+V +YKARLV QGF Q EG DFF T APVAR+ST+R + +LAA H+ + MDV A+LN ++EE+++K P F P + V +L KSLYGLKQ+ + W+ D+ ++ G + D CLY D G+ +++ +YVDD++I G +++VDE K +S +F MKD+G ILGI+++ R N+ I+ISQ I ++L+++ F +C V TPID +K+L +G + + E +GSLMYA TRPDIAYAV + +R
Sbjct: 585 KMIFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENK-VCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLYSKFDTHGKG-VIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIK--RGNNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLLPNKGVAVSQLEYSRAIGSLMYAMISTRPDIAYAVAKLSR 856
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 217 bits (553), Expect = 2.990e-62 Identity = 119/279 (42.65%), Postives = 183/279 (65.59%), Query Frame = 1
Query: 1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPID--RKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
+KW+F+ K DG+V +KARLVAQGFSQ G+D+ +T +PVAR ++RTV +LAA+H +L MDV A+LN ++EE+++K F ++ V RLR+S+YGLKQS R WN+ LD L MG +T D C+Y +++GGE ++ +AVYVDD+++AG+ + K++E+K ++++F+MKD+G L LG++V P + I I Q + + VL+R+G + + TP++ K+K A + + + + VG L+Y ST TRPDIAYAV AR
Sbjct: 28 SKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEH-LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVAR 303
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A2U1QL30_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QL30_ARTAN) HSP 1 Score: 221 bits (563), Expect = 6.090e-62 Identity = 118/276 (42.75%), Postives = 180/276 (65.22%), Query Frame = 1
Query: 4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAG-RREKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
KWIFKRK+K DG++ +YKARLV QGF Q EG D+F T APVAR+ST+R + +LAA H+ + MDV A+LN ++EE+++K P F P + V +L KSLYGLKQ+ + W+ D+ ++ G + D C+Y S+ + +++ +YVDD++I G +++V+E K +S +F MKD+G ILGI++ R N I+ISQ I ++L ++ F +C + TP+D ++K+L +G++ + E +GSLMYA TRPDIAYAV + +R
Sbjct: 870 KWIFKRKMKVDGTIDKYKARLVIQGFRQKEGIDYFDTYAPVARISTIRLLLALAAIHNLVIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGHENK-VCKLVKSLYGLKQAPKQWHQKFDEIVLSNGFVLNQADKCVY-SKFEDSRNGVIICLYVDDMLIFGTNQDQVNETKEFLSSKFAMKDMGEAEVILGIKII--RENKGISISQSHYIEKILDKFNFKDCSPIGTPMDPQLKLLPNKGKAVSQLEYSKRIGSLMYAMISTRPDIAYAVGKLSR 1141
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 214 bits (545), Expect = 2.350e-61 Identity = 112/278 (40.29%), Postives = 180/278 (64.75%), Query Frame = 1
Query: 4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAP--EGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
KW+FK K DGS+ R+KARLVAQGFSQ G D+ +T +PV R ++RTV +L+ + +L MDV AA+LN +E+E+++K P F ++ +L KSLYGLKQS R WN+ LD+ L +G + +D C+Y +DG +VA++VDD+++AG+ EK+ ++K +I++RF++KD+G L ILG++V + + + I Q + ++++YG + C+ V TP+D K+++ + N E++ VGSL+Y S+ TRPDI +AV+ A+
Sbjct: 193 KWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGN--IFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAK 465
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A6L2LWU7_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LWU7_TANCI) HSP 1 Score: 209 bits (532), Expect = 1.050e-60 Identity = 113/273 (41.39%), Postives = 169/273 (61.90%), Query Frame = 1
Query: 4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQ 819
KWI KRK+K DGS+ +YKARLV QGF + EG +FF T APVAR++T+R + +L A HD + MDV A+LN ++EE+++K P F + V +L+KSLYGLKQ+ + W+ D+ ++ G + D C+Y DD G +++ +YVDD++I G +++VD+ K +S +F MKDLG ILGI ++ R N+ I++SQ I ++L ++ F C V TP+D V + G + E +G LMYA TRPDIA+A+ +
Sbjct: 134 KWILKRKIKVDGSIDKYKARLVIQGFRRKEGIEFFDTYAPVARITTIRLLLALTAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFVMSGYENK-VCKLKKSLYGLKQALKQWHQKFDEVVLSNGFSLNQADKCVYSRFDDSGNG-VIIYLYVDDMLIFGTDQDQVDKTKELLSSKFDMKDLGEAEVILGIRIK--RGNNGISVSQSHYIEKILAKFNFANCSPVSTPVDPTVMFRSNNGTPVSQLEYSRAIGCLMYAMISTRPDIAFAIRK 402
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A6S7IKL3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IKL3_PARCT) HSP 1 Score: 215 bits (547), Expect = 1.440e-60 Identity = 118/279 (42.29%), Postives = 183/279 (65.59%), Query Frame = 1
Query: 1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPID--RKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
+KW+F+ K DG+V +KARLVAQGFSQ G+D+ +T +PVAR ++RTV +LAA+H +L MDV A+LN ++EE+++K P F ++ V RLR+S+YGLK+S R WN+ LD L MG +T D C+Y +++GGE ++ +AVYVDD+++AG+ + K++E+K ++++F+MKD+G L LG++V + I I Q + + VL+R+G + + TP++ K+K A + + + + VG L+Y ST TRPDIAYAV AR
Sbjct: 558 SKWVFRIKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIEKGKEH-LVCRLRRSIYGLKKSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKEADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVAR 833
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 211 bits (538), Expect = 1.900e-60 Identity = 117/279 (41.94%), Postives = 181/279 (64.87%), Query Frame = 1
Query: 1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPID--RKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
+KW+F+ K DG+V +KARLVAQGFSQ G+D+ +T +PVAR ++RTV +LAA+H +L MDV A+LN ++EE+++K P F ++ V RLR+S+ GLKQS R WN+ LD L MG +T D C+Y +++GGE ++ +AVYVDD+++AG+ + K++E+K ++++F+MKD+G LG++V + I I Q + + VL+R+G + + TP++ K+K A + + + + VG L+Y ST TRPDIAYAV AR
Sbjct: 176 SKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVAR 451
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI) HSP 1 Score: 212 bits (539), Expect = 3.240e-60 Identity = 113/276 (40.94%), Postives = 172/276 (62.32%), Query Frame = 1
Query: 4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRREKV-DELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
KW+FK+KL+ DG++ +YKARLVA+G++Q EGED+F T +PVAR++T+R + SLAA H F + MDV A+LN +EEE+++ P F ++ V +L KSLYGLKQ+ + W+ D L G + D C+Y+ R GG+ +L +YVDD++I G KV E+K +S F MKDLG I+ I++ + N +T+ Q + +VL R+G+ EC PTP D V++ + + ++GSLMY ++ TRPDI++AV + +R
Sbjct: 233 KWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RFGGGDGVIL-CLYVDDILIFGNNLKVIKEVKEFLSNNFEMKDLGEADVIVNIKLSREEGNGWVTLMQSHYVEKVLNRFGYSECTPAPTPYDPSVRLRKNHRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSR 505
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A2U1PVD2_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PVD2_ARTAN) HSP 1 Score: 216 bits (549), Expect = 4.370e-60 Identity = 117/273 (42.86%), Postives = 174/273 (63.74%), Query Frame = 1
Query: 4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQ 819
KWIFK+ +K DG++ ++KARLV QGF Q G D+F T A VAR+ST+R + +L+A HD + MDV A+LN +EEE+++ P F P + V +L KSLYGLKQ+ + W+ D+ ++ G + +D C+Y SR D + +++ +YVDD++I G +++VDE K +S +F MKD+G ILGI ++ R + I I+Q I ++L+R+ + EC V TP+D VK++ +G + E +VGSLMYA T TRPDIAY V Q
Sbjct: 722 KWIFKKNMKVDGTIDKFKARLVIQGFKQKPGIDYFDTYATVARISTIRLLIALSAIHDLIVHQMDVKTAFLNGDLEEEVYMNQPEGFVMPGNEHK-VCKLVKSLYGLKQTPKQWHQKFDEVILSSGFSLNQSDKCIY-SRFDSSCSGVIICLYVDDMLIFGTDQQQVDETKDLLSSKFSMKDMGEADVILGIRIK--RADKGIAITQSHYIEKMLKRFNYSECSPVSTPMDSSVKLMLNKGMGISQLEYSQVVGSLMYAMTSTRPDIAYDVGQ 990
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 214 bits (545), Expect = 1.640e-59 Identity = 125/280 (44.64%), Postives = 171/280 (61.07%), Query Frame = 1
Query: 1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFF--KTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRREKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSG-------NSTENRGMVGSLMYASTGTRPDIAYAV 813
+K +F+ K +G+V+ +KARLVAQGFSQV G D+ +T APV+R+ ++RT+ SLAA HD+EL+ MDV +AYLN +EE ++++LPP F+PP + V RL+K+LYGLKQ+GR W TL + MG D +++ R+ GE+ ++VA VDDL I G + VD +I QRF M DLG L ILGIEVR DR I ISQ S I ++ R+ DE + P+ + + S R VGSLMYA+ GTRPDI +AV
Sbjct: 1074 SKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSH-LVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAV 1350 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig61293.13833.1 >prot_H-paniculata_contig61293.13833.1 ID=prot_H-paniculata_contig61293.13833.1|Name=mRNA_H-paniculata_contig61293.13833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTback to top mRNA from alignment at H-paniculata_contig61293:5..919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig61293.13833.1 ID=mRNA_H-paniculata_contig61293.13833.1|Name=mRNA_H-paniculata_contig61293.13833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=915bp|location=Sequence derived from alignment at H-paniculata_contig61293:5..919- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig61293:5..919- >mRNA_H-paniculata_contig61293.13833.1 ID=mRNA_H-paniculata_contig61293.13833.1|Name=mRNA_H-paniculata_contig61293.13833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig61293:5..919- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |